메뉴 건너뛰기




Volumn 108, Issue 8, 2011, Pages 1942-1953

Carbon metabolism limits recombinant protein production in Pichia pastoris

Author keywords

13C flux analysis; Amino acid biosynthetic cost; Crabtree; Metabolic network analysis; Off gas analysis; Yeast

Indexed keywords

AMINO PEPTIDASE; BY-PRODUCT FORMATION; CARBON METABOLISM; CELL PHYSIOLOGY; CELLULAR METABOLISM; CRABTREE; ENERGY GENERATIONS; FERMENTATION MEDIUM; FLUX ANALYSIS; GROWTH MEDIUM; LIMITING FACTORS; LOW-TO-HIGH; METABOLIC NETWORK; METABOLIC NETWORK ANALYSIS; MODEL PROTEINS; MOLECULAR TOOLS; OFF-GAS ANALYSIS; P. PASTORIS; PICHIA PASTORIS; PRODUCTION YIELD; PROTEIN PRODUCTION; PROTEINOGENIC AMINO ACIDS; RECOMBINANT PROTEIN; RECOMBINANT PROTEIN PRODUCTIONS; REDUCED GROWTH RATE; TCA CYCLE; UPPER LIMITS;

EID: 79959227594     PISSN: 00063592     EISSN: 10970290     Source Type: Journal    
DOI: 10.1002/bit.23114     Document Type: Article
Times cited : (97)

References (59)
  • 2
    • 1942473105 scopus 로고    scopus 로고
    • TCA cycle activity in Saccharomyces cerevisiae is a function of the environmentally determined specific growth and glucose uptake rates
    • Blank LM, Sauer U. 2004. TCA cycle activity in Saccharomyces cerevisiae is a function of the environmentally determined specific growth and glucose uptake rates. Microbiology 150: 1085-1093.
    • (2004) Microbiology , vol.150 , pp. 1085-1093
    • Blank, L.M.1    Sauer, U.2
  • 3
    • 25444467580 scopus 로고    scopus 로고
    • 13C-flux analysis reveals mechanistic principles of metabolic network robustness to null mutations in yeast
    • 13C-flux analysis reveals mechanistic principles of metabolic network robustness to null mutations in yeast. Genome Biol 6: R49.
    • (2005) Genome Biol , vol.6
    • Blank, L.M.1    Kuepfer, L.2    Sauer, U.3
  • 4
    • 15044342010 scopus 로고    scopus 로고
    • Metabolic-flux and network analysis in fourteen hemiascomycetous yeasts
    • Blank LM, Lehmbeck F, Sauer U. 2005b. Metabolic-flux and network analysis in fourteen hemiascomycetous yeasts. FEMS Yeast Res 5: 545-558.
    • (2005) FEMS Yeast Res , vol.5 , pp. 545-558
    • Blank, L.M.1    Lehmbeck, F.2    Sauer, U.3
  • 6
    • 74049130331 scopus 로고    scopus 로고
    • Macromolecular and elemental composition analysis and extracellular metabolite balances of Pichia pastoris growing at different oxygen levels
    • Carnicer M, Baumann K, Toplitz I, Sanchez-Ferrando F, Mattanovich D, Ferrer P, Albiol J. 2009. Macromolecular and elemental composition analysis and extracellular metabolite balances of Pichia pastoris growing at different oxygen levels. Microb Cell Fact 8: 65.
    • (2009) Microb Cell Fact , vol.8 , pp. 65
    • Carnicer, M.1    Baumann, K.2    Toplitz, I.3    Sanchez-Ferrando, F.4    Mattanovich, D.5    Ferrer, P.6    Albiol, J.7
  • 7
    • 74849113944 scopus 로고    scopus 로고
    • Metabolic flux analysis for recombinant protein production by Pichia pastoris using dual carbon sources: Effects of methanol feeding rate
    • Celik E, Calik P, Oliver SG. 2010. Metabolic flux analysis for recombinant protein production by Pichia pastoris using dual carbon sources: Effects of methanol feeding rate. Biotechnol Bioeng 105: 317-329.
    • (2010) Biotechnol Bioeng , vol.105 , pp. 317-329
    • Celik, E.1    Calik, P.2    Oliver, S.G.3
  • 8
    • 0036669602 scopus 로고    scopus 로고
    • Production of recombinant proteins in fermenter cultures of the yeast Pichia pastoris
    • Cereghino GP, Cereghino JL, Ilgen C, Cregg JM. 2002. Production of recombinant proteins in fermenter cultures of the yeast Pichia pastoris Curr Opin Biotechnol 13: 329-332.
    • (2002) Curr Opin Biotechnol , vol.13 , pp. 329-332
    • Cereghino, G.P.1    Cereghino, J.L.2    Ilgen, C.3    Cregg, J.M.4
  • 10
    • 14744299579 scopus 로고
    • Recent advances in the expression of foreign genes in Pichia pastoris
    • Cregg JM, Vedvick TS, Raschke WC. 1993. Recent advances in the expression of foreign genes in Pichia pastoris Nat Biotechnol 11: 905-910.
    • (1993) Nat Biotechnol , vol.11 , pp. 905-910
    • Cregg, J.M.1    Vedvick, T.S.2    Raschke, W.C.3
  • 12
    • 0022711472 scopus 로고
    • Theoretical growth yield estimates for recombinant cells
    • Da Silva NA, Bailey JE. 1985. Theoretical growth yield estimates for recombinant cells. Biotechnol Bioeng 28: 741-746.
    • (1985) Biotechnol Bioeng , vol.28 , pp. 741-746
    • Da Silva, N.A.1    Bailey, J.E.2
  • 13
    • 1542350073 scopus 로고    scopus 로고
    • Role of transcriptional regulation in controlling fluxes in central carbon metabolism of Saccharomyces cerevisiae-A chemostat culture study
    • Daran-Lapujade P, Jansen MLA, Daran JM, van Gulik W, de Winde JH, Pronk JT. 2004. Role of transcriptional regulation in controlling fluxes in central carbon metabolism of Saccharomyces cerevisiae-A chemostat culture study. J Biol Chem 279: 9125-9138.
    • (2004) J Biol Chem , vol.279 , pp. 9125-9138
    • Daran-Lapujade, P.1    Jansen, M.L.A.2    Daran, J.M.3    van Gulik, W.4    de Winde, J.H.5    Pronk, J.T.6
  • 14
    • 0034233268 scopus 로고    scopus 로고
    • GC-MS analysis of amino acids rapidly provides rich information for isotopomer balancing
    • Dauner M, Sauer U. 2000. GC-MS analysis of amino acids rapidly provides rich information for isotopomer balancing. Biotechnol Prog 16: 642-649.
    • (2000) Biotechnol Prog , vol.16 , pp. 642-649
    • Dauner, M.1    Sauer, U.2
  • 19
    • 24344438618 scopus 로고    scopus 로고
    • A novel b-peptidyl aminopeptidase (BapA) from strain 3-2W4 cleaves peptide bonds of synthetic b-tri- and b-dipeptides
    • Geueke B, Namoto K, Seebach D, Kohler HP. 2005. A novel b-peptidyl aminopeptidase (BapA) from strain 3-2W4 cleaves peptide bonds of synthetic b-tri- and b-dipeptides. J Bacteriol 187: 5910-5917.
    • (2005) J Bacteriol , vol.187 , pp. 5910-5917
    • Geueke, B.1    Namoto, K.2    Seebach, D.3    Kohler, H.P.4
  • 20
    • 33751117982 scopus 로고    scopus 로고
    • Bacterial b-peptidyl aminopeptidases with unique substrate specificities for b-oligopeptides and mixed b,a-oligopeptides
    • Geueke B, Heck T, Limbach M, Nesatyy V, Seebach D, Kohler HP. 2006. Bacterial b-peptidyl aminopeptidases with unique substrate specificities for b-oligopeptides and mixed b, a-oligopeptides. FEBS J 273: 5261-5272.
    • (2006) FEBS J , vol.273 , pp. 5261-5272
    • Geueke, B.1    Heck, T.2    Limbach, M.3    Nesatyy, V.4    Seebach, D.5    Kohler, H.P.6
  • 21
    • 0028801765 scopus 로고
    • Metabolic load and heterologous gene expression
    • Glick BR. 1995. Metabolic load and heterologous gene expression. Biotechnol Adv 13: 247-261.
    • (1995) Biotechnol Adv , vol.13 , pp. 247-261
    • Glick, B.R.1
  • 22
    • 15044351457 scopus 로고    scopus 로고
    • Amino acid supplementation, controlled oxygen limitation and sequential double induction improves heterologous xylanase production by Pichia stipitis
    • Gorgens JF, Passoth V, van Zyl WH, Knoetze JH, Hahn-Hagerdal M. 2005a. Amino acid supplementation, controlled oxygen limitation and sequential double induction improves heterologous xylanase production by Pichia stipitis FEMS Yeast Res 5: 677-683.
    • (2005) FEMS Yeast Res , vol.5 , pp. 677-683
    • Gorgens, J.F.1    Passoth, V.2    van Zyl, W.H.3    Knoetze, J.H.4    Hahn-Hagerdal, M.5
  • 23
    • 21244466810 scopus 로고    scopus 로고
    • Amino acid supplementation improves heterologous protein production by Saccharomyces cerevisiae in defined medium
    • Gorgens JF, van Zyl WH, Knoetze JH, Hahn-Hagerdal B. 2005b. Amino acid supplementation improves heterologous protein production by Saccharomyces cerevisiae in defined medium. Appl Microbiol Biotechnol 67: 684-691.
    • (2005) Appl Microbiol Biotechnol , vol.67 , pp. 684-691
    • Gorgens, J.F.1    van Zyl, W.H.2    Knoetze, J.H.3    Hahn-Hagerdal, B.4
  • 24
    • 64549111428 scopus 로고    scopus 로고
    • Yeast systems biotechnology for the production of heterologous proteins
    • Graf A, Dragosits M, Gasser B, Mattanovich D. 2009. Yeast systems biotechnology for the production of heterologous proteins. FEMS Yeast Res 9: 335-348.
    • (2009) FEMS Yeast Res , vol.9 , pp. 335-348
    • Graf, A.1    Dragosits, M.2    Gasser, B.3    Mattanovich, D.4
  • 25
    • 0041371758 scopus 로고
    • Amino acid transporters in yeast: Structure, function and regulation
    • In: De Pont JJLLM, editor. Amsterdam: Elsevier, p -
    • Grenson M. 1992. Amino acid transporters in yeast: Structure, function and regulation. In: De Pont JJLLM, editor. Molecular aspects of transport proteins (In: New Compr Biochem). Amsterdam: Elsevier, p 219-245.
    • (1992) Molecular aspects of transport proteins (In: New Compr Biochem) , pp. 219-245
    • Grenson, M.1
  • 29
    • 34948904391 scopus 로고    scopus 로고
    • Enzyme-catalyzed formation of β-peptides: β-peptidyl aminopeptidases BapA and DmpA acting as β-peptide-synthesizing enzymes
    • Heck T, Kohler HPE, Limbach M, Flogel O, Seebach D, Geueke B. 2007. Enzyme-catalyzed formation of β-peptides: β-peptidyl aminopeptidases BapA and DmpA acting as β-peptide-synthesizing enzymes. Chem Biodivers 4: 2016-2030.
    • (2007) Chem Biodivers , vol.4 , pp. 2016-2030
    • Heck, T.1    Kohler, H.P.E.2    Limbach, M.3    Flogel, O.4    Seebach, D.5    Geueke, B.6
  • 30
    • 71449083602 scopus 로고    scopus 로고
    • Correlation between TCA cycle flux and glucose uptake rate during respiro-fermentative growth of Saccharomyces cerevisiae
    • Heyland J, Fu J, Blank LM. 2009. Correlation between TCA cycle flux and glucose uptake rate during respiro-fermentative growth of Saccharomyces cerevisiae Microbiology 155: 3827-3837.
    • (2009) Microbiology , vol.155 , pp. 3827-3837
    • Heyland, J.1    Fu, J.2    Blank, L.M.3
  • 32
    • 78149252300 scopus 로고    scopus 로고
    • Quantitative physiology of Pichia pastoris during glucose-limited high cell-density fed-batch cultivation for recombinant protein production
    • Heyland J, Fu J, Blank LM, Schmid A. 2010b. Quantitative physiology of Pichia pastoris during glucose-limited high cell-density fed-batch cultivation for recombinant protein production. Biotechnol Bioeng 107: 357-368.
    • (2010) Biotechnol Bioeng , vol.107 , pp. 357-368
    • Heyland, J.1    Fu, J.2    Blank, L.M.3    Schmid, A.4
  • 33
    • 2942755215 scopus 로고    scopus 로고
    • Stress induced by recombinant protein production in Escherichia coli
    • Hoffmann F, Rinas U. 2004. Stress induced by recombinant protein production in Escherichia coli Adv Biochem Eng Biotechnol 89: 73-92.
    • (2004) Adv Biochem Eng Biotechnol , vol.89 , pp. 73-92
    • Hoffmann, F.1    Rinas, U.2
  • 34
    • 0035167888 scopus 로고    scopus 로고
    • The effect of ethanol and acetate on protein expression in Pichia pastoris
    • Inan M, Meagher MM. 2001. The effect of ethanol and acetate on protein expression in Pichia pastoris J Biosci Bioeng 92: 337-341.
    • (2001) J Biosci Bioeng , vol.92 , pp. 337-341
    • Inan, M.1    Meagher, M.M.2
  • 35
    • 0031560764 scopus 로고    scopus 로고
    • Metabolic flux distributions in recombinant Saccharomyces cerevisiae during foreign protein production
    • Jin S, Ye K, Shimizu K. 1997. Metabolic flux distributions in recombinant Saccharomyces cerevisiae during foreign protein production. J Biotechnol 54: 161-174.
    • (1997) J Biotechnol , vol.54 , pp. 161-174
    • Jin, S.1    Ye, K.2    Shimizu, K.3
  • 38
    • 17244363998 scopus 로고    scopus 로고
    • Heterologous protein production using the Pichia pastoris expression system
    • Macauley-Patrick S, Fazenda ML, McNeil B, Harvey LM. 2005. Heterologous protein production using the Pichia pastoris expression system. Yeast 22: 249-270.
    • (2005) Yeast , vol.22 , pp. 249-270
    • Macauley-Patrick, S.1    Fazenda, M.L.2    McNeil, B.3    Harvey, L.M.4
  • 41
    • 1642277932 scopus 로고    scopus 로고
    • Functional production and secretion of the Gluconacetobacter diazotrophicus fructose-releasing exo-levanase (LsdB) in Pichia pastoris
    • Menendez C, Hernandez L, Banguela A, Pais J. 2004. Functional production and secretion of the Gluconacetobacter diazotrophicus fructose-releasing exo-levanase (LsdB) in Pichia pastoris Enzyme Microb Technol 34: 446-452.
    • (2004) Enzyme Microb Technol , vol.34 , pp. 446-452
    • Menendez, C.1    Hernandez, L.2    Banguela, A.3    Pais, J.4
  • 42
    • 74549196085 scopus 로고    scopus 로고
    • Performance of the auxotrophic Saccharomyces cerevisiae BY4741 as host for the production of IL-1b in aerated fed-batch reactor: Role of ACA supplementation, strain viability, and maintenance energy
    • Paciello L, de Alteriis E, Mazzoni C, Palermo V, Zueco J, Parascandola P. 2009. Performance of the auxotrophic Saccharomyces cerevisiae BY4741 as host for the production of IL-1b in aerated fed-batch reactor: Role of ACA supplementation, strain viability, and maintenance energy. Microb Cell Fact 8: 70.
    • (2009) Microb Cell Fact , vol.8 , pp. 70
    • Paciello, L.1    de Alteriis, E.2    Mazzoni, C.3    Palermo, V.4    Zueco, J.5    Parascandola, P.6
  • 44
    • 65349188084 scopus 로고    scopus 로고
    • Do amino acid biosynthetic costs constrain protein evolution in Saccharomyces cerevisiae?
    • Raiford DW, Heizer EM, Miller RV, Akashi H, Raymer ML, Krane DE. 2008. Do amino acid biosynthetic costs constrain protein evolution in Saccharomyces cerevisiae? J Mol Evol 67: 621-630.
    • (2008) J Mol Evol , vol.67 , pp. 621-630
    • Raiford, D.W.1    Heizer, E.M.2    Miller, R.V.3    Akashi, H.4    Raymer, M.L.5    Krane, D.E.6
  • 45
    • 34247347868 scopus 로고    scopus 로고
    • Sorbitol co-feeding reduces metabolic burden caused by the overexpression of a Rhizopus oryzae lipase in Pichia pastoris
    • Ramon R, Ferrer P, Valero F. 2007. Sorbitol co-feeding reduces metabolic burden caused by the overexpression of a Rhizopus oryzae lipase in Pichia pastoris J Biotechnol 130: 39-46.
    • (2007) J Biotechnol , vol.130 , pp. 39-46
    • Ramon, R.1    Ferrer, P.2    Valero, F.3
  • 47
    • 36749071435 scopus 로고    scopus 로고
    • Escherichia coli physiology in Luria-Bertani broth
    • Sezonov G, Joseleau-Petit D, D'Ari R. 2007. Escherichia coli physiology in Luria-Bertani broth. J Bacteriol 189: 8746-8749.
    • (2007) J Bacteriol , vol.189 , pp. 8746-8749
    • Sezonov, G.1    Joseleau-Petit, D.2    D'Ari, R.3
  • 48
    • 0036275447 scopus 로고    scopus 로고
    • Getting started with yeast
    • Sherman F. 2002. Getting started with yeast. Methods Enzymol 350: 3-41.
    • (2002) Methods Enzymol , vol.350 , pp. 3-41
    • Sherman, F.1
  • 49
    • 3042652967 scopus 로고    scopus 로고
    • Amino acid biosynthesis and metabolic flux profiling of Pichia pastoris
    • Sola A, Maaheimo H, Ylonen K, Ferrer P, Szyperski T. 2004. Amino acid biosynthesis and metabolic flux profiling of Pichia pastoris Eur J Biochem 271: 2462-2470.
    • (2004) Eur J Biochem , vol.271 , pp. 2462-2470
    • Sola, A.1    Maaheimo, H.2    Ylonen, K.3    Ferrer, P.4    Szyperski, T.5
  • 50
    • 33846268057 scopus 로고    scopus 로고
    • Metabolic flux profiling of Pichia pastoris grown on glycerol/methanol mixtures in chemostat cultures at low and high dilution rates
    • Sola A, Jouhten P, Maaheimo H, Sanchez-Ferrando F, Szyperski T, Ferrer P. 2007. Metabolic flux profiling of Pichia pastoris grown on glycerol/methanol mixtures in chemostat cultures at low and high dilution rates. Microbiology 153: 281-290.
    • (2007) Microbiology , vol.153 , pp. 281-290
    • Sola, A.1    Jouhten, P.2    Maaheimo, H.3    Sanchez-Ferrando, F.4    Szyperski, T.5    Ferrer, P.6
  • 52
    • 0033955802 scopus 로고    scopus 로고
    • The role of ammonia metabolism in nitrogen catabolite repression in Saccharomyces cerevisiae
    • ter Schure EG, van Riel NAW, Verrips CT. 2000. The role of ammonia metabolism in nitrogen catabolite repression in Saccharomyces cerevisiae FEMS Microbiol Rev 24: 67-83.
    • (2000) FEMS Microbiol Rev , vol.24 , pp. 67-83
    • ter Schure, E.G.1    van Riel, N.A.W.2    Verrips, C.T.3
  • 53
    • 0026710123 scopus 로고
    • Effect of benzoic acid on metabolic fluxes in yeasts: A continuous-culture study on the regulation of respiration and alcoholic fermentation
    • Verduyn C, Postma E, Scheffers WA, Van Dijken JP. 1992. Effect of benzoic acid on metabolic fluxes in yeasts: A continuous-culture study on the regulation of respiration and alcoholic fermentation. Yeast 8: 501-517.
    • (1992) Yeast , vol.8 , pp. 501-517
    • Verduyn, C.1    Postma, E.2    Scheffers, W.A.3    Van Dijken, J.P.4
  • 54
    • 0031579445 scopus 로고    scopus 로고
    • Isolation of the Pichia pastoris glyceraldehyde-3-phosphate dehydrogenase gene and regulation and use of its promoter
    • Waterham HR, Digan ME, Koutz PJ, Lair SV, Cregg JM. 1997. Isolation of the Pichia pastoris glyceraldehyde-3-phosphate dehydrogenase gene and regulation and use of its promoter. Gene 186: 37-44.
    • (1997) Gene , vol.186 , pp. 37-44
    • Waterham, H.R.1    Digan, M.E.2    Koutz, P.J.3    Lair, S.V.4    Cregg, J.M.5
  • 55
    • 0037027392 scopus 로고    scopus 로고
    • Metabolic adaptation of Escherichia coli during temperature-induced recombinant protein production: 2. Redirection of metabolic fluxes
    • Weber J, Hoffmann F, Rinas U. 2002. Metabolic adaptation of Escherichia coli during temperature-induced recombinant protein production: 2. Redirection of metabolic fluxes. Biotechnol Bioeng 80: 320-330.
    • (2002) Biotechnol Bioeng , vol.80 , pp. 320-330
    • Weber, J.1    Hoffmann, F.2    Rinas, U.3
  • 56
    • 33749644238 scopus 로고    scopus 로고
    • Nutrient regulation of oligopeptide transport in Saccharomyces cerevisiae
    • Wiles AM, Cai HJ, Naider F, Becker JM. 2006. Nutrient regulation of oligopeptide transport in Saccharomyces cerevisiae Microbiology 152: 3133-3145.
    • (2006) Microbiology , vol.152 , pp. 3133-3145
    • Wiles, A.M.1    Cai, H.J.2    Naider, F.3    Becker, J.M.4
  • 59


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.