-
1
-
-
34249297627
-
Metabolic flux analysis in a nonstationary system: Fed-batch fermentation of a high yielding strain of E. coli producing 1,3-propanediol
-
Antoniewicz MR, Kraynie DF, Laffend LA, Gonzalez-Lergier J, Kelleher JK, Stephanopoulos G. 2007. Metabolic flux analysis in a nonstationary system: Fed-batch fermentation of a high yielding strain of E. coli producing 1,3-propanediol. Metab Eng 9:277-292.
-
(2007)
Metab Eng
, vol.9
, pp. 277-292
-
-
Antoniewicz, M.R.1
Kraynie, D.F.2
Laffend, L.A.3
Gonzalez-Lergier, J.4
Kelleher, J.K.5
Stephanopoulos, G.6
-
2
-
-
0020382853
-
A simple colorimetric method for detecting cell viability in cultures of eukaryotic microorganisms
-
Bonora A, Mares D. 1982. A simple colorimetric method for detecting cell viability in cultures of eukaryotic microorganisms. Curr Microbiol 7:217-222.
-
(1982)
Curr Microbiol
, vol.7
, pp. 217-222
-
-
Bonora, A.1
Mares, D.2
-
3
-
-
0017184389
-
A rapid and sensitive for the quantitation of microgram quantities of protein utilizing the principle of protein dye binding
-
Bradford MM. 1976. A rapid and sensitive for the quantitation of microgram quantities of protein utilizing the principle of protein dye binding. Anal Biochem 72:248-254.
-
(1976)
Anal Biochem
, vol.72
, pp. 248-254
-
-
Bradford, M.M.1
-
4
-
-
0025168284
-
Fermentation development of recombinant Pichia pastoris expressing the heterologous gene: Bovine lysozyme
-
Brierley RA, Bussineau C, Kosson R, Melton A, Siegel RS. 1990. Fermentation development of recombinant Pichia pastoris expressing the heterologous gene: Bovine lysozyme. Ann NY Acad Sci 589:350-362.
-
(1990)
Ann NY Acad Sci
, vol.589
, pp. 350-362
-
-
Brierley, R.A.1
Bussineau, C.2
Kosson, R.3
Melton, A.4
Siegel, R.S.5
-
5
-
-
0032921045
-
Mass flux balance-based model and metabolic pathway analysis for serine alkaline protease synthesis by Bacillus licheniformis
-
Çalik P, Özdamar TH. 1999. Mass flux balance-based model and metabolic pathway analysis for serine alkaline protease synthesis by Bacillus licheniformis. Enzyme Microb Tech 24:621-635.
-
(1999)
Enzyme Microb Tech
, vol.24
, pp. 621-635
-
-
Çalik, P.1
Özdamar, T.H.2
-
6
-
-
0036356136
-
Bioreaction network flux analysis for industrial microorganisms: A review
-
Çalik P, Özdamar TH. 2002a. Bioreaction network flux analysis for industrial microorganisms: A review. Rev Chem Eng 18:553-596.
-
(2002)
Rev Chem Eng
, vol.18
, pp. 553-596
-
-
Çalik, P.1
Özdamar, T.H.2
-
7
-
-
0036256390
-
Metabolic flux analysis for human therapeutic protein productions and hypothesis for new therapeutical strategies in medicine
-
Çalik P, Özdamar TH. 2002b. Metabolic flux analysis for human therapeutic protein productions and hypothesis for new therapeutical strategies in medicine. Biochem Eng J 11:49-68.
-
(2002)
Biochem Eng J
, vol.11
, pp. 49-68
-
-
Çalik, P.1
Özdamar, T.H.2
-
8
-
-
0345628615
-
Oxygen transfer effects in serine alkaline protease fermentation by Bacillus licheniformis: Use of citric acid as the carbon source
-
Çalik P, Çalik G, Özdamar TH. 1998. Oxygen transfer effects in serine alkaline protease fermentation by Bacillus licheniformis: Use of citric acid as the carbon source. Enzyme Microb Tech 23:451-461.
-
(1998)
Enzyme Microb Tech
, vol.23
, pp. 451-461
-
-
Çalik, P.1
Çalik, G.2
Özdamar, T.H.3
-
9
-
-
0033587790
-
Metabolic flux analysis for serine alkaline protease fermentation by Bacillus licheniformis in a defined medium: Effects of the oxygen transfer rate
-
Çalik P, Çalik G, Takaç S, Özdamar TH. 1999. Metabolic flux analysis for serine alkaline protease fermentation by Bacillus licheniformis in a defined medium: Effects of the oxygen transfer rate. Biotechnol Bioeng 64:151-167.
-
(1999)
Biotechnol Bioeng
, vol.64
, pp. 151-167
-
-
Çalik, P.1
Çalik, G.2
Takaç, S.3
Özdamar, T.H.4
-
10
-
-
36549023117
-
Production of recombinant human erythropoietin from Pichia pastoris and its structural analysis
-
Çelik E, Çalik P, Halloran SM, Oliver SG. 2007. Production of recombinant human erythropoietin from Pichia pastoris and its structural analysis. J Appl Microbiol 103:2084-2094.
-
(2007)
J Appl Microbiol
, vol.103
, pp. 2084-2094
-
-
Çelik, E.1
Çalik, P.2
Halloran, S.M.3
Oliver, S.G.4
-
11
-
-
44349187955
-
Use of biodiesel by-product crude glycerol as the carbon source for fermentation processes by recombinant Pichia pastoris
-
Çelik E, Özbay N, Oktar N, Çalik P. 2008. Use of biodiesel by-product crude glycerol as the carbon source for fermentation processes by recombinant Pichia pastoris. Ind Eng Chem Res 47:2985-2990.
-
(2008)
Ind Eng Chem Res
, vol.47
, pp. 2985-2990
-
-
Çelik, E.1
Özbay, N.2
Oktar, N.3
Çalik, P.4
-
12
-
-
70349897510
-
Fed-batch methanol feeding strategy for recombinant protein production by Pichia pastoris in the presence of co-substrate sorbitol
-
Çelik E, Çalik P, Oliver SG. 2009. Fed-batch methanol feeding strategy for recombinant protein production by Pichia pastoris in the presence of co-substrate sorbitol. Yeast 26:473-484.
-
(2009)
Yeast
, vol.26
, pp. 473-484
-
-
Çelik, E.1
Çalik, P.2
Oliver, S.G.3
-
13
-
-
0033955337
-
Heterologous protein expression in the methylotrophic yeast Pichia pastoris
-
Cereghino JL, Cregg JM. 2000. Heterologous protein expression in the methylotrophic yeast Pichia pastoris. FEMS Microb Rev 24:45-66.
-
(2000)
FEMS Microb Rev
, vol.24
, pp. 45-66
-
-
Cereghino, J.L.1
Cregg, J.M.2
-
14
-
-
0028430975
-
Intracellular expression of Vitreoscilla hemoglobin alters the aerobic metabolism of Saccharomyces cerevisiae
-
Chen W, Hughes DE, Bailey JE. 1994. Intracellular expression of Vitreoscilla hemoglobin alters the aerobic metabolism of Saccharomyces cerevisiae. Biotechnol Prog 10:308-313.
-
(1994)
Biotechnol Prog
, vol.10
, pp. 308-313
-
-
Chen, W.1
Hughes, D.E.2
Bailey, J.E.3
-
15
-
-
67149116767
-
Genome sequence of the recombinant protein production host Pichia pastoris
-
De Schutter K, Lin YC, Tiels P, Van Hecke A, Glinka S, Weber-Lehmann J, Rouzé P, Van de Peer Y, Callewaert N. 2009. Genome sequence of the recombinant protein production host Pichia pastoris. Nat Biotechnol 27:561-566.
-
(2009)
Nat Biotechnol
, vol.27
, pp. 561-566
-
-
De Schutter, K.1
Lin, Y.C.2
Tiels, P.3
Van Hecke, A.4
Glinka, S.5
Weber-Lehmann, J.6
Rouzé, P.7
Van de Peer, Y.8
Callewaert, N.9
-
16
-
-
0013096838
-
Metabolic-flux profiling of the yeasts Saccharomyces cerevisiae and Pichia stipitis
-
Fiaux J, Çakar ZP, Sonderegger M, Wuthrich K, Szyperski T, Sauer U. 2003. Metabolic-flux profiling of the yeasts Saccharomyces cerevisiae and Pichia stipitis. Eukaryot Cell 2:170-180.
-
(2003)
Eukaryot Cell
, vol.2
, pp. 170-180
-
-
Fiaux, J.1
Çakar, Z.P.2
Sonderegger, M.3
Wuthrich, K.4
Szyperski, T.5
Sauer, U.6
-
17
-
-
0037200931
-
A functional genomics approach using metabolomics and in silico pathway analysis
-
Förster J, Gombert AK, Nielsen J. 2002. A functional genomics approach using metabolomics and in silico pathway analysis. Biotechnol Bioeng 79:703-712.
-
(2002)
Biotechnol Bioeng
, vol.79
, pp. 703-712
-
-
Förster, J.1
Gombert, A.K.2
Nielsen, J.3
-
18
-
-
0037313750
-
Genome-scale reconstruction of the Saccharomyces cerevisiae metabolic network
-
Förster J, Famili I, Fu P, Palson BO, Nielsen J. 2003. Genome-scale reconstruction of the Saccharomyces cerevisiae metabolic network. Genome Res 13:244-253.
-
(2003)
Genome Res
, vol.13
, pp. 244-253
-
-
Förster, J.1
Famili, I.2
Fu, P.3
Palson, B.O.4
Nielsen, J.5
-
19
-
-
0037457492
-
Metabolic analysis of the synthesis of high levels of intracellular human SOD in Saccharomyces cerevisiae rhSOD 2060 411 SGA122
-
Gonzalez R, Andrews BA, Molitor J, Asenjo JA. 2003. Metabolic analysis of the synthesis of high levels of intracellular human SOD in Saccharomyces cerevisiae rhSOD 2060 411 SGA122. Biotechnol Bioeng 82:152-169.
-
(2003)
Biotechnol Bioeng
, vol.82
, pp. 152-169
-
-
Gonzalez, R.1
Andrews, B.A.2
Molitor, J.3
Asenjo, J.A.4
-
20
-
-
0035921173
-
Analysis of single chain antibody production in Pichia pastoris using on-line methanol control in fed-batch and mixed-feed fermentation
-
Hellwig S, Emde F, Raven NPG, Henke M, Van der Logt P, Fischer R. 2001. Analysis of single chain antibody production in Pichia pastoris using on-line methanol control in fed-batch and mixed-feed fermentation. Biotechnol Bioeng 74:344-352.
-
(2001)
Biotechnol Bioeng
, vol.74
, pp. 344-352
-
-
Hellwig, S.1
Emde, F.2
Raven, N.P.G.3
Henke, M.4
Van der Logt, P.5
Fischer, R.6
-
21
-
-
33646049350
-
Effects of pH strategy on endo- and exo-metabolome profiles and sodium potassium hydrogen ports of beta-lactamase producing Bacillus licheniformis
-
İleri N, Çalik P. 2006. Effects of pH strategy on endo- and exo-metabolome profiles and sodium potassium hydrogen ports of beta-lactamase producing Bacillus licheniformis. Biotechnol Prog 22:411-419.
-
(2006)
Biotechnol Prog
, vol.22
, pp. 411-419
-
-
İleri, N.1
Çalik, P.2
-
22
-
-
0035703883
-
Non-repressing carbon sources for alcohol oxidase (AOX1) promoter of Pichia pastoris
-
Inan M, Meagher MM. 2001. Non-repressing carbon sources for alcohol oxidase (AOX1) promoter of Pichia pastoris. J Biosci Bioeng 92:585-589.
-
(2001)
J Biosci Bioeng
, vol.92
, pp. 585-589
-
-
Inan, M.1
Meagher, M.M.2
-
23
-
-
0029278153
-
Metabolic flux distributions in Penicillium chrysogenum during fed-batch cultivations
-
Jorgensen H, Nielsen J, Villadsen J, Mollgaard H. 1995. Metabolic flux distributions in Penicillium chrysogenum during fed-batch cultivations. Biotechnol Bioeng 46:117-131.
-
(1995)
Biotechnol Bioeng
, vol.46
, pp. 117-131
-
-
Jorgensen, H.1
Nielsen, J.2
Villadsen, J.3
Mollgaard, H.4
-
24
-
-
34447292394
-
A quantitative analysis of the benefits of mixed feeds of sorbitol and methanol for the production of recombinant avidin with Pichia pastoris
-
Jungo C, Schenk J, Pasquier M, Marison IW, von Stockar U. 2007. A quantitative analysis of the benefits of mixed feeds of sorbitol and methanol for the production of recombinant avidin with Pichia pastoris. J Biotechnol 131:57-66.
-
(2007)
J Biotechnol
, vol.131
, pp. 57-66
-
-
Jungo, C.1
Schenk, J.2
Pasquier, M.3
Marison, I.W.4
von Stockar, U.5
-
25
-
-
33947138087
-
Engineering primary metabolic pathways of industrial micro-organisms
-
Kern A, Tilley E, Hunter IS, Legisa M, Glieder A. 2007. Engineering primary metabolic pathways of industrial micro-organisms. J Biotechnol 129:6-29.
-
(2007)
J Biotechnol
, vol.129
, pp. 6-29
-
-
Kern, A.1
Tilley, E.2
Hunter, I.S.3
Legisa, M.4
Glieder, A.5
-
26
-
-
38449090607
-
Dynamic in vivo metabolome response of Saccharomyces cerevisiae to a stepwise perturbation of the ATP requirement for Benzoate Export
-
Kresnowati MTAP, van Winden WA, van Gulik WM, Heijnen JJ. 2008. Dynamic in vivo metabolome response of Saccharomyces cerevisiae to a stepwise perturbation of the ATP requirement for Benzoate Export. Biotechnol Bioeng 99:421-441.
-
(2008)
Biotechnol Bioeng
, vol.99
, pp. 421-441
-
-
Kresnowati, M.T.A.P.1
van Winden, W.A.2
van Gulik, W.M.3
Heijnen, J.J.4
-
27
-
-
0035014718
-
Central carbon metabolism of Saccharomyces cerevisiae explored by biosynthetic fractional 13C labeling of common amino acids
-
Maaheimo H, Fiaux J, Cakar ZP, Bailey JE, Sauer U, Szyperski T. 2001. Central carbon metabolism of Saccharomyces cerevisiae explored by biosynthetic fractional 13C labeling of common amino acids. Eur J Biochem 268:2464-2479.
-
(2001)
Eur J Biochem
, vol.268
, pp. 2464-2479
-
-
Maaheimo, H.1
Fiaux, J.2
Cakar, Z.P.3
Bailey, J.E.4
Sauer, U.5
Szyperski, T.6
-
30
-
-
34047177923
-
Metabolic flux analysis at ultra short time scale: Isotopically nonstationary 13C labeling experiments
-
Nöh K, Grönke K, Luo B, Takors R, Oldiges M, Wiechert W. 2007. Metabolic flux analysis at ultra short time scale: Isotopically nonstationary 13C labeling experiments. J Biotechnol 129:249-267.
-
(2007)
J Biotechnol
, vol.129
, pp. 249-267
-
-
Nöh, K.1
Grönke, K.2
Luo, B.3
Takors, R.4
Oldiges, M.5
Wiechert, W.6
-
31
-
-
34247347868
-
Sorbitol co-feeding reduces metabolic burden caused by theoverexpression of a Rhizopus oryzae lipase in Pichia pastoris
-
Ramon R, Ferrer P, Valero F. 2007. Sorbitol co-feeding reduces metabolic burden caused by theoverexpression of a Rhizopus oryzae lipase in Pichia pastoris. J Biotechnol 130:39-46.
-
(2007)
J Biotechnol
, vol.130
, pp. 39-46
-
-
Ramon, R.1
Ferrer, P.2
Valero, F.3
-
32
-
-
3042652967
-
Amino acid biosynthesis and metabolic flux profiling of Pichia pastoris
-
Sola A, Maaheimo H, Ylonen K, Ferrer P, Szyperski T. 2004. Amino acid biosynthesis and metabolic flux profiling of Pichia pastoris. Eur J Biochem 271:2462-2470.
-
(2004)
Eur J Biochem
, vol.271
, pp. 2462-2470
-
-
Sola, A.1
Maaheimo, H.2
Ylonen, K.3
Ferrer, P.4
Szyperski, T.5
-
33
-
-
33846268057
-
Metabolic flux profiling of Pichia pastoris grown on glycerol/ methanol mixtures in chemostat cultures at low and high dilution rates
-
Sola A, Jouhten P, Maaheimo H, Sanchez-Ferrando F, Szyperski T, Ferrer P. 2007. Metabolic flux profiling of Pichia pastoris grown on glycerol/ methanol mixtures in chemostat cultures at low and high dilution rates. Microbiology 153:281-290.
-
(2007)
Microbiology
, vol.153
, pp. 281-290
-
-
Sola, A.1
Jouhten, P.2
Maaheimo, H.3
Sanchez-Ferrando, F.4
Szyperski, T.5
Ferrer, P.6
-
34
-
-
0030997654
-
Strategies for optimal synthesis and secretion of heterologous proteins in the methylotrophic yeast Pichia pastoris
-
Sreekrishna K, Brankamp RG, Kroop KE, Blankenship DT, Tsay JT, Smith PL, Wierschke JD, Subramaniam A, Birkenberger LA. 1997. Strategies for optimal synthesis and secretion of heterologous proteins in the methylotrophic yeast Pichia pastoris. Gene 190:55-62.
-
(1997)
Gene
, vol.190
, pp. 55-62
-
-
Sreekrishna, K.1
Brankamp, R.G.2
Kroop, K.E.3
Blankenship, D.T.4
Tsay, J.T.5
Smith, P.L.6
Wierschke, J.D.7
Subramaniam, A.8
Birkenberger, L.A.9
-
35
-
-
0025866296
-
Network rigidity and metabolic engineering in metabolite overproduction
-
Stephanopoulos G, Vallino JJ. 1991. Network rigidity and metabolic engineering in metabolite overproduction. Science 252:1675-1681.
-
(1991)
Science
, vol.252
, pp. 1675-1681
-
-
Stephanopoulos, G.1
Vallino, J.J.2
-
36
-
-
0034878314
-
Conversion of xylose to ethanol by recombinant Saccharomyces cerevisiae: Importance of xylulokinase (XKS1) and oxygen availability
-
Toivari MH, Aristidou A, Ruohonen L, Penttilä M. 2001. Conversion of xylose to ethanol by recombinant Saccharomyces cerevisiae: Importance of xylulokinase (XKS1) and oxygen availability. Metab Eng 3:236-249.
-
(2001)
Metab Eng
, vol.3
, pp. 236-249
-
-
Toivari, M.H.1
Aristidou, A.2
Ruohonen, L.3
Penttilä, M.4
-
37
-
-
0030051960
-
Effect of Vitreoscilla hemoglobin dosage on microaerobic Escherichia coli carbon and energy metabolism
-
Tsai PS, Hatzimanikatis V, Bailey JE. 1996. Effect of Vitreoscilla hemoglobin dosage on microaerobic Escherichia coli carbon and energy metabolism. Biotechnol Bioeng 49:139-150.
-
(1996)
Biotechnol Bioeng
, vol.49
, pp. 139-150
-
-
Tsai, P.S.1
Hatzimanikatis, V.2
Bailey, J.E.3
-
38
-
-
0032484705
-
Proposed mechanism of acetate accumulation in two recombinant Escherichia coli strains during high density fermentation
-
Van De Walle M, Shiloach J. 1998. Proposed mechanism of acetate accumulation in two recombinant Escherichia coli strains during high density fermentation. Biotechnol Bioeng 57:71-78.
-
(1998)
Biotechnol Bioeng
, vol.57
, pp. 71-78
-
-
Van De Walle, M.1
Shiloach, J.2
-
39
-
-
0035811896
-
Metabolic and kinetic analysis of poly(3-Hydroxybutyrate) production by recombinant Escherichia coli
-
Van Wegen RJ, Lee S-Y, Middelberg APJ. 2001. Metabolic and kinetic analysis of poly(3-Hydroxybutyrate) production by recombinant Escherichia coli. Biotechnol Bioeng 74:70-80.
-
(2001)
Biotechnol Bioeng
, vol.74
, pp. 70-80
-
-
Van Wegen, R.J.1
Lee, S.-Y.2
Middelberg, A.P.J.3
-
40
-
-
11144283607
-
Use of different carbon sources in cultivation of recombinant Pichia pastoris for angiostatin production
-
Xie J, Zhou Q, Du P, Gan R, Ye Q. 2005. Use of different carbon sources in cultivation of recombinant Pichia pastoris for angiostatin production. Enzyme Microb Tech 36:210-216.
-
(2005)
Enzyme Microb Tech
, vol.36
, pp. 210-216
-
-
Xie, J.1
Zhou, Q.2
Du, P.3
Gan, R.4
Ye, Q.5
|