-
1
-
-
20644467467
-
Systems biotechnology for strain improvement
-
10.1016/j.tibtech.2005.05.003, 15923052
-
Lee SY, Lee DY, Kim TY. Systems biotechnology for strain improvement. TRENDS Biotechnol 2005, 23:349-358. 10.1016/j.tibtech.2005.05.003, 15923052.
-
(2005)
TRENDS Biotechnol
, vol.23
, pp. 349-358
-
-
Lee, S.Y.1
Lee, D.Y.2
Kim, T.Y.3
-
2
-
-
64549111428
-
Yeast systems biotechnology for the production of heterologous proteins
-
10.1111/j.1567-1364.2009.00507.x, 19341379
-
Graf A, Dragosits M, Gasser B, Mattanovich D. Yeast systems biotechnology for the production of heterologous proteins. FEMS Yeast Res 2009, 9:335-348. 10.1111/j.1567-1364.2009.00507.x, 19341379.
-
(2009)
FEMS Yeast Res
, vol.9
, pp. 335-348
-
-
Graf, A.1
Dragosits, M.2
Gasser, B.3
Mattanovich, D.4
-
3
-
-
2342648924
-
Integrating high-throughput and computational data elucidates bacterial networks
-
10.1038/nature02456, 15129285
-
Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. Integrating high-throughput and computational data elucidates bacterial networks. Nature 2004, 429:92-96. 10.1038/nature02456, 15129285.
-
(2004)
Nature
, vol.429
, pp. 92-96
-
-
Covert, M.W.1
Knight, E.M.2
Reed, J.L.3
Herrgard, M.J.4
Palsson, B.O.5
-
4
-
-
0037313750
-
Genome-scale reconstruction of the Saccharomyces cerevisiae metabolic network
-
10.1101/gr.234503, 420374, 12566402
-
Forster J, Famili I, Fu PC, Palsson BO, Nielsen J. Genome-scale reconstruction of the Saccharomyces cerevisiae metabolic network. Genome Res 2003, 13:244-253. 10.1101/gr.234503, 420374, 12566402.
-
(2003)
Genome Res
, vol.13
, pp. 244-253
-
-
Forster, J.1
Famili, I.2
Fu, P.C.3
Palsson, B.O.4
Nielsen, J.5
-
5
-
-
45149111660
-
The growing scope of applications of genome-scale metabolic reconstructions using Escherichia coli
-
10.1038/nbt1401, 18536691
-
Feist AM, Palsson BO. The growing scope of applications of genome-scale metabolic reconstructions using Escherichia coli . Nat Biotechnol 2008, 26:659-667. 10.1038/nbt1401, 18536691.
-
(2008)
Nat Biotechnol
, vol.26
, pp. 659-667
-
-
Feist, A.M.1
Palsson, B.O.2
-
6
-
-
52649105455
-
The genome-scale metabolic model iIN800 of Saccharomyces cerevisiae and its validation: a scaffold to query lipid metabolism
-
Nookaew I, Jewett MC, Meechai A, Thammarongtham C, Laoteng K, Cheevadhanarak S, Nielsen J, Bhumiratana S. The genome-scale metabolic model iIN800 of Saccharomyces cerevisiae and its validation: a scaffold to query lipid metabolism. BMC Systems Biol 2008, 2:71.
-
(2008)
BMC Systems Biol
, vol.2
, pp. 71
-
-
Nookaew, I.1
Jewett, M.C.2
Meechai, A.3
Thammarongtham, C.4
Laoteng, K.5
Cheevadhanarak, S.6
Nielsen, J.7
Bhumiratana, S.8
-
7
-
-
58549108388
-
Reconstruction of biochemical networks in microorganisms
-
Feist AM, Herrgård MJ, Thiele I, Reed JL, Palsson B. Reconstruction of biochemical networks in microorganisms. Nat Rev Microbiol 2009, 7:129-143.
-
(2009)
Nat Rev Microbiol
, vol.7
, pp. 129-143
-
-
Feist, A.M.1
Herrgård, M.J.2
Thiele, I.3
Reed, J.L.4
Palsson, B.5
-
8
-
-
0033107837
-
Quantification of intracellular metabolic fluxes from fractional enrichment and 13C-13C coupling constraints on the isotopomer distribution in labeled biomass components
-
Schmidt K, Norregaard LC. Quantification of intracellular metabolic fluxes from fractional enrichment and 13C-13C coupling constraints on the isotopomer distribution in labeled biomass components. Metabolic Eng 1999, 1:166-179.
-
(1999)
Metabolic Eng
, vol.1
, pp. 166-179
-
-
Schmidt, K.1
Norregaard, L.C.2
-
9
-
-
8144231101
-
Oxygen- and glucose-dependent regulation of central carbon metabolism in Pichia anomala
-
10.1128/AEM.70.10.5905-5911.2004, 522099, 15466531
-
Fredlund E, Blank LM, Schnurer J, Sauer U, Passoth V. Oxygen- and glucose-dependent regulation of central carbon metabolism in Pichia anomala . Appl Environ Microbiol 2004, 70:5905-5911. 10.1128/AEM.70.10.5905-5911.2004, 522099, 15466531.
-
(2004)
Appl Environ Microbiol
, vol.70
, pp. 5905-5911
-
-
Fredlund, E.1
Blank, L.M.2
Schnurer, J.3
Sauer, U.4
Passoth, V.5
-
10
-
-
64549104846
-
The effect of temperature on the proteome of recombinant Pichia pastoris
-
Dragosits M, Stadlmann J, Albiol J, Baumann K, Maurer M, Gasser B, Sauer M, Altmann F, Ferrer P, Mattanovich D. The effect of temperature on the proteome of recombinant Pichia pastoris. J Proteome Res 2009, 8(3):1380-1392.
-
(2009)
J Proteome Res
, vol.8
, Issue.3
, pp. 1380-1392
-
-
Dragosits, M.1
Stadlmann, J.2
Albiol, J.3
Baumann, K.4
Maurer, M.5
Gasser, B.6
Sauer, M.7
Altmann, F.8
Ferrer, P.9
Mattanovich, D.10
-
11
-
-
0035813391
-
Statistical reconciliation of elemental and molecular biomass composition of Saccharomyces cerevisiae
-
10.1002/bit.10054, 11590606
-
Lange HC, Heijnen JJ. Statistical reconciliation of elemental and molecular biomass composition of Saccharomyces cerevisiae . Biotechnol Bioeng 75:334-344. 10.1002/bit.10054, 11590606.
-
Biotechnol Bioeng
, vol.75
, pp. 334-344
-
-
Lange, H.C.1
Heijnen, J.J.2
-
12
-
-
13344260704
-
Classification, error detection, and reconciliation of process information in complex biochemical systems
-
10.1002/(SICI)1097-0290(19960220)49:4<364::AID-BIT2>3.0.CO;2-N, 18623590
-
Noorman H, Romein B, Luyben K, Heijnen J. Classification, error detection, and reconciliation of process information in complex biochemical systems. Biotechnol Bioeng 1996, 49:364-76. 10.1002/(SICI)1097-0290(19960220)49:4<364::AID-BIT2>3.0.CO;2-N, 18623590.
-
(1996)
Biotechnol Bioeng
, vol.49
, pp. 364-376
-
-
Noorman, H.1
Romein, B.2
Luyben, K.3
Heijnen, J.4
-
14
-
-
74049102899
-
A multilevel study of heterologous protein production in Pichia pastoris under different oxygen conditions as a knowledge base for strain improvement
-
Baumann K, Dragosits M, Graf A, Maurer M, Gasser B, Stadlmann J, Altmann F, Mattanovich D, Ferrer P. A multilevel study of heterologous protein production in Pichia pastoris under different oxygen conditions as a knowledge base for strain improvement. New Biotechnol 2009, 25S:S330.
-
(2009)
New Biotechnol
, vol.25 S
-
-
Baumann, K.1
Dragosits, M.2
Graf, A.3
Maurer, M.4
Gasser, B.5
Stadlmann, J.6
Altmann, F.7
Mattanovich, D.8
Ferrer, P.9
-
15
-
-
33744499696
-
Engineering of Pichia pastoris for improved production of antibody fragments
-
10.1002/bit.20851, 16570317
-
Gasser B, Maurer M, Gach J, Kunert R, Mattanovich D. Engineering of Pichia pastoris for improved production of antibody fragments. Biotechnol Bioeng 2006, 94:353-361. 10.1002/bit.20851, 16570317.
-
(2006)
Biotechnol Bioeng
, vol.94
, pp. 353-361
-
-
Gasser, B.1
Maurer, M.2
Gach, J.3
Kunert, R.4
Mattanovich, D.5
-
16
-
-
42549132542
-
Hypoxic fed-batch cultivation of Pichia pastoris increases specific and volumetric productivity of recombinant proteins
-
10.1002/bit.21763, 18078287
-
Baumann K, Maurer M, Dragosits M, Cos O, Ferrer P, Mattanovich D. Hypoxic fed-batch cultivation of Pichia pastoris increases specific and volumetric productivity of recombinant proteins. Biotechnol Bioeng 2008, 100:177-183. 10.1002/bit.21763, 18078287.
-
(2008)
Biotechnol Bioeng
, vol.100
, pp. 177-183
-
-
Baumann, K.1
Maurer, M.2
Dragosits, M.3
Cos, O.4
Ferrer, P.5
Mattanovich, D.6
-
17
-
-
67149116767
-
Genome sequence of the recombinant protein production host Pichia pastoris
-
10.1038/nbt.1544, 19465926
-
Schutter K, Lin Y, Tiels P, Van Hecke A, Glinka S, Weber-Lehmann J, Rouze P, Peer Y, Callewaert N. Genome sequence of the recombinant protein production host Pichia pastoris . Nat Biotechnol 2009, 27:561-569. 10.1038/nbt.1544, 19465926.
-
(2009)
Nat Biotechnol
, vol.27
, pp. 561-569
-
-
Schutter, K.1
Lin, Y.2
Tiels, P.3
Van Hecke, A.4
Glinka, S.5
Weber-Lehmann, J.6
Rouze, P.7
Peer, Y.8
Callewaert, N.9
-
18
-
-
67650089521
-
Genome, secretome and glucose transport highlight unique features of the protein production host Pichia pastoris
-
10.1186/1475-2859-8-29, 2702363, 19490607
-
Mattanovich D, Graf A, Stadlmann J, Dragosits M, Redl A, Maurer M, Kleinheinz M, Sauer M, Altmann F, Gasser B. Genome, secretome and glucose transport highlight unique features of the protein production host Pichia pastoris . Microb Cell Fact 2009, 8:29. 10.1186/1475-2859-8-29, 2702363, 19490607.
-
(2009)
Microb Cell Fact
, vol.8
, pp. 29
-
-
Mattanovich, D.1
Graf, A.2
Stadlmann, J.3
Dragosits, M.4
Redl, A.5
Maurer, M.6
Kleinheinz, M.7
Sauer, M.8
Altmann, F.9
Gasser, B.10
-
19
-
-
0038712724
-
Multiple positive and negative elements involved in the regulation of expression of GSY1 in Saccharomyces cerevisiae
-
10.1074/jbc.M211808200, 12697770
-
Unnikrishnan I, Miller S, Meinke M, LaPorte DC. Multiple positive and negative elements involved in the regulation of expression of GSY1 in Saccharomyces cerevisiae . J Biol Chem 2003, 278:26450-26457. 10.1074/jbc.M211808200, 12697770.
-
(2003)
J Biol Chem
, vol.278
, pp. 26450-26457
-
-
Unnikrishnan, I.1
Miller, S.2
Meinke, M.3
LaPorte, D.C.4
-
20
-
-
10244239321
-
Life with 6000 Genes
-
10.1126/science.274.5287.546, 8849441
-
Goffeau A, Barrell BG, Bussey H, Davis RW, Dujon B, Feldmann H, Galibert F, Hoheisel JD, Jacq C, Johnston M, Louis EJ, Mewes HW, Murakami Y, Philippsen P, Tettelin P, Oliver SG. Life with 6000 Genes. Science 1996, 274:546-567. 10.1126/science.274.5287.546, 8849441.
-
(1996)
Science
, vol.274
, pp. 546-567
-
-
Goffeau, A.1
Barrell, B.G.2
Bussey, H.3
Davis, R.W.4
Dujon, B.5
Feldmann, H.6
Galibert, F.7
Hoheisel, J.D.8
Jacq, C.9
Johnston, M.10
Louis, E.J.11
Mewes, H.W.12
Murakami, Y.13
Philippsen, P.14
Tettelin, P.15
Oliver, S.G.16
-
21
-
-
0004033526
-
Yeast physiology and biotechnology
-
New York: Wiley & Sons
-
Walker GM. Yeast physiology and biotechnology. 2000, New York: Wiley & Sons.
-
(2000)
-
-
Walker, G.M.1
-
22
-
-
0031610412
-
Classical genetic manipulation
-
Cregg JM, Shen S, Johnson M, Waterham HR. Classical genetic manipulation. Meth Mol Biol 1989, 103:17-26.
-
(1989)
Meth Mol Biol
, vol.103
, pp. 17-26
-
-
Cregg, J.M.1
Shen, S.2
Johnson, M.3
Waterham, H.R.4
-
23
-
-
0020812944
-
Application of macroscopic balances to the identification of gross measurement errors
-
10.1002/bit.260250906, 18574815
-
Wang N, Stephanopoulos G. Application of macroscopic balances to the identification of gross measurement errors. Biotechnol Bioeng 1983, 25:2177-2208. 10.1002/bit.260250906, 18574815.
-
(1983)
Biotechnol Bioeng
, vol.25
, pp. 2177-2208
-
-
Wang, N.1
Stephanopoulos, G.2
-
24
-
-
13344260704
-
Classification, error detection, and reconciliation of process information in complex biochemical systems
-
10.1002/(SICI)1097-0290(19960220)49:4<364::AID-BIT2>3.0.CO;2-N, 18623590
-
Noorman H, Romein B, Luyben K, Heijnen J. Classification, error detection, and reconciliation of process information in complex biochemical systems. Biotechnol Bioeng 1996, 49:364-376. 10.1002/(SICI)1097-0290(19960220)49:4<364::AID-BIT2>3.0.CO;2-N, 18623590.
-
(1996)
Biotechnol Bioeng
, vol.49
, pp. 364-376
-
-
Noorman, H.1
Romein, B.2
Luyben, K.3
Heijnen, J.4
-
25
-
-
0028764687
-
Linear constraint relations in biochemical reaction systems: I. Classification of the calculability and the balanceability of conversion Rates
-
10.1002/bit.260430103, 18613305
-
Heijden R, Romein B, Heijnen J, Hellinga C, Luyben K. Linear constraint relations in biochemical reaction systems: I. Classification of the calculability and the balanceability of conversion Rates. Biotechnol Bioeng 1994, 43:3-10. 10.1002/bit.260430103, 18613305.
-
(1994)
Biotechnol Bioeng
, vol.43
, pp. 3-10
-
-
Heijden, R.1
Romein, B.2
Heijnen, J.3
Hellinga, C.4
Luyben, K.5
-
26
-
-
0028764649
-
Linear constraint relations in biochemical reaction systems: II. Diagnosis and estimation of gross errors
-
10.1002/bit.260430104, 18613306
-
Heijden R, Romein B, Heijnen J, Hellinga C, Luyben K. Linear constraint relations in biochemical reaction systems: II. Diagnosis and estimation of gross errors. Biotechnol Bioeng 1994, 43:11-20. 10.1002/bit.260430104, 18613306.
-
(1994)
Biotechnol Bioeng
, vol.43
, pp. 11-20
-
-
Heijden, R.1
Romein, B.2
Heijnen, J.3
Hellinga, C.4
Luyben, K.5
-
27
-
-
0028500729
-
Linear constrain relations in biochemical reaction systems III. Sequential application of data reconciliation for sensitive detection of systematic errors
-
10.1002/bit.260440703, 18618845
-
Heijden RTJM, Romein B, Heijnen JJ, Hellinga C, Luyben KCAM. Linear constrain relations in biochemical reaction systems III. Sequential application of data reconciliation for sensitive detection of systematic errors. Biotechnol Bioeng 1994, 44:781-791. 10.1002/bit.260440703, 18618845.
-
(1994)
Biotechnol Bioeng
, vol.44
, pp. 781-791
-
-
Heijden, R.T.J.M.1
Romein, B.2
Heijnen, J.J.3
Hellinga, C.4
Luyben, K.C.A.M.5
-
28
-
-
0024010612
-
A 13C comparative nuclear magnetic resonance study of organic solute production and excretion by the yeasts Hansenula anomala and Saccharomyces cerevisiae in saline media
-
Bellinger Y, Larher F. A 13C comparative nuclear magnetic resonance study of organic solute production and excretion by the yeasts Hansenula anomala and Saccharomyces cerevisiae in saline media. Can J Microbiol 1988, 34:605-61.
-
(1988)
Can J Microbiol
, vol.34
, pp. 605-661
-
-
Bellinger, Y.1
Larher, F.2
-
29
-
-
0027456507
-
Sugar and salt-tolerant yeasts
-
Tokuoka K. Sugar and salt-tolerant yeasts. J Appl Microbiol 1993, 74:101-110.
-
(1993)
J Appl Microbiol
, vol.74
, pp. 101-110
-
-
Tokuoka, K.1
-
30
-
-
33645076497
-
Biotechnology, physiology and genetics of the yeast Pichia anomala
-
10.1111/j.1567-1364.2005.00004.x, 16423066
-
Passoth V, Fredlund E, Druvefors U, Schnürer J. Biotechnology, physiology and genetics of the yeast Pichia anomala. FEMS Yeast Res 2006, 6:3-13. 10.1111/j.1567-1364.2005.00004.x, 16423066.
-
(2006)
FEMS Yeast Res
, vol.6
, pp. 3-13
-
-
Passoth, V.1
Fredlund, E.2
Druvefors, U.3
Schnürer, J.4
-
31
-
-
0000676550
-
Energy-yielding metabolism
-
New York: Academic Press, Rose A, Harrison J
-
Gancedo C, Serrano R. Energy-yielding metabolism. The Yeasts 1989, 206-259. New York: Academic Press, Rose A, Harrison J.
-
(1989)
The Yeasts
, pp. 206-259
-
-
Gancedo, C.1
Serrano, R.2
-
32
-
-
84987301218
-
Chromatography of amino acids on sulfonated polystyrene resins
-
Moore S, Spackman H, Stein H. Chromatography of amino acids on sulfonated polystyrene resins. Anal Chem 30(7):1185-1190.
-
Anal Chem
, vol.30
, Issue.7
, pp. 1185-1190
-
-
Moore, S.1
Spackman, H.2
Stein, H.3
-
34
-
-
0028500527
-
Stoichiometric model of the aerobic metabolism of the biological phosphorus removal process
-
10.1002/bit.260440709, 18618851
-
Smolders GJF, Meij J, van Loosdrecht MCM, Heijnen JJ. Stoichiometric model of the aerobic metabolism of the biological phosphorus removal process. Biotechnol Bioeng 1994, 44:837-848. 10.1002/bit.260440709, 18618851.
-
(1994)
Biotechnol Bioeng
, vol.44
, pp. 837-848
-
-
Smolders, G.J.F.1
Meij, J.2
van Loosdrecht, M.C.M.3
Heijnen, J.J.4
-
35
-
-
0036310074
-
Trehalose and glycogen in wine-making yeasts: methodological aspects and variability
-
Roustan JL, Sablayrolles JM. Trehalose and glycogen in wine-making yeasts: methodological aspects and variability. Biotechnol Lett 2002, 24:1059-1064.
-
(2002)
Biotechnol Lett
, vol.24
, pp. 1059-1064
-
-
Roustan, J.L.1
Sablayrolles, J.M.2
-
36
-
-
0018128226
-
Lipid extraction of tissues with low-toxicity solvent
-
10.1016/0003-2697(78)90046-5, 727482
-
Hara A, Radin NS. Lipid extraction of tissues with low-toxicity solvent. Anal Biochem 1978, 90:420-426. 10.1016/0003-2697(78)90046-5, 727482.
-
(1978)
Anal Biochem
, vol.90
, pp. 420-426
-
-
Hara, A.1
Radin, N.S.2
-
37
-
-
33646830639
-
Comparison of DNA and RNA quantification methods suitable for parameter estimation in metabolic modelling of microorganisms
-
10.1016/j.ab.2006.02.014, 16545766
-
De Mey M, Lequeux G, Maertens J, De Maeseneire S, Soetaert W, Van Damme E. Comparison of DNA and RNA quantification methods suitable for parameter estimation in metabolic modelling of microorganisms. Anal Biochem 2006, 353:198-203. 10.1016/j.ab.2006.02.014, 16545766.
-
(2006)
Anal Biochem
, vol.353
, pp. 198-203
-
-
De Mey, M.1
Lequeux, G.2
Maertens, J.3
De Maeseneire, S.4
Soetaert, W.5
Van Damme, E.6
-
38
-
-
0002546375
-
A simple and reliable method for the determination of cellular RNA content
-
Benthin S, Nielsen J, Villadsen J. A simple and reliable method for the determination of cellular RNA content. Biotechnol Tech 1991, 5:39-42.
-
(1991)
Biotechnol Tech
, vol.5
, pp. 39-42
-
-
Benthin, S.1
Nielsen, J.2
Villadsen, J.3
-
39
-
-
3042652967
-
Amino acid biosynthesis and metabolic flux profiling of Pichia pastoris
-
10.1111/j.1432-1033.2004.04176.x, 15182362
-
Solà A, Maaheimo H, Yloönen K, Ferrer P, Szyperski T. Amino acid biosynthesis and metabolic flux profiling of Pichia pastoris. Eur J Biochem 2004, 271:2462-2470. 10.1111/j.1432-1033.2004.04176.x, 15182362.
-
(2004)
Eur J Biochem
, vol.271
, pp. 2462-2470
-
-
Solà, A.1
Maaheimo, H.2
Yloönen, K.3
Ferrer, P.4
Szyperski, T.5
|