메뉴 건너뛰기




Volumn 30, Issue 12, 2011, Pages 2445-2453

The 2′-OH group of the peptidyl-tRNA stabilizes an active conformation of the ribosomal PTC

Author keywords

2 OH; mechanism; peptidyl transfer; peptidyl tRNA; ribosome

Indexed keywords

ELONGATION FACTOR TU; HYDROXYL GROUP; PEPTIDE; PEPTIDE TRANSFER RIBONUCLEIC ACID; PEPTIDYLTRANSFERASE; TRANSFER RNA; UNCLASSIFIED DRUG; AMINOACYL TRANSFER RNA; HYDROXYL RADICAL; OXIDIZING AGENT;

EID: 79958829880     PISSN: 02614189     EISSN: 14602075     Source Type: Journal    
DOI: 10.1038/emboj.2011.142     Document Type: Article
Times cited : (52)

References (39)
  • 2
    • 0034637111 scopus 로고    scopus 로고
    • The complete atomic structure of the large ribosomal subunit at 2.4 a resolution
    • DOI 10.1126/science.289.5481.905
    • Ban N, Nissen P, Hansen J, Moore PB, Steitz TA (2000) The complete atomic structure of the large ribosomal subunit at 2.4 A resolution. Science 289: 905-920 (Pubitemid 30659939)
    • (2000) Science , vol.289 , Issue.5481 , pp. 905-920
    • Ban, N.1    Nissen, P.2    Hansen, J.3    Moore, P.B.4    Steitz, T.A.5
  • 4
    • 42449085840 scopus 로고    scopus 로고
    • Modulating the activity of the peptidyl transferase center of the ribosome
    • DOI 10.1261/rna.980308
    • Beringer M (2008) Modulating the activity of the peptidyl transfer-ase center of the ribosome. RNA 14: 795-801 (Pubitemid 351574900)
    • (2008) RNA , vol.14 , Issue.5 , pp. 795-801
    • Beringer, M.1
  • 5
    • 33745071762 scopus 로고    scopus 로고
    • Peptide bond formation does not involve acid-base catalysis by ribosomal residues
    • DOI 10.1038/nsmb1091, PII N1091
    • Bieling P, Beringer M, Adio S, Rodnina MV (2006) Peptide bond formation does not involve acid-base catalysis by ribosomal residues. Nat Struct Mol Biol 13: 423-428 (Pubitemid 43881582)
    • (2006) Nature Structural and Molecular Biology , vol.13 , Issue.5 , pp. 423-428
    • Bieling, P.1    Beringer, M.2    Adio, S.3    Rodnina, M.V.4
  • 7
    • 29844448116 scopus 로고    scopus 로고
    • The interaction between C75 of tRNA and the A loop of the ribosome stimulates peptidyl transferase activity
    • DOI 10.1261/rna.2256706
    • Brunelle JL, Youngman EM, Sharma D, Green R (2006) The interaction between C75 of tRNA and the A loop of the ribosome stimulates peptidyl transferase activity. RNA 12: 33-39 (Pubitemid 43037451)
    • (2006) RNA , vol.12 , Issue.1 , pp. 33-39
    • Brunelle, J.L.1    Youngman, E.M.2    Sharma, D.3    Green, R.4
  • 8
    • 33644798018 scopus 로고    scopus 로고
    • The hybrid state of tRNA binding is an authentic translation elongation intermediate
    • DOI 10.1038/nsmb1060, PII N1060
    • Dorner S, Brunelle JL, Sharma D, Green R (2006) The hybrid state of tRNA binding is an authentic translation elongation intermediate. Nat Struct Mol Biol 13: 234-241 (Pubitemid 43348509)
    • (2006) Nature Structural and Molecular Biology , vol.13 , Issue.3 , pp. 234-241
    • Dorner, S.1    Brunelle, J.L.2    Sharma, D.3    Green, R.4
  • 9
    • 0345099498 scopus 로고    scopus 로고
    • Mononucleotide derivatives as ribosomal P-site substrates reveal an important contribution of the 2′-OH to activity
    • DOI 10.1093/nar/gkg842
    • 0-OH to activity. Nucleic Acids Res 31: 6536-6542 (Pubitemid 37508758)
    • (2003) Nucleic Acids Research , vol.31 , Issue.22 , pp. 6536-6542
    • Dorner, S.1    Panuschka, C.2    Schmid, W.3    Barta, A.4
  • 11
    • 0037062949 scopus 로고    scopus 로고
    • The chemical repertoire of natural ribozymes
    • DOI 10.1038/418222a
    • Doudna JA, Cech TR (2002) The chemical repertoire of natural ribozymes. Nature 418: 222-228 (Pubitemid 34773781)
    • (2002) Nature , vol.418 , Issue.6894 , pp. 222-228
    • Doudna, J.A.1    Cech, T.R.2
  • 13
    • 0018498843 scopus 로고
    • Nucleoside triphosphate regeneration decreases the frequency of translation errors
    • Jelenc PC, Kurland CG (1979) Nucleoside triphosphate regeneration decreases the frequency of translation errors. Proc Natl Acad Sci USA 76: 3174-3178
    • (1979) Proc Natl Acad Sci USA , vol.76 , pp. 3174-3178
    • Jelenc, P.C.1    Kurland, C.G.2
  • 14
    • 0036671344 scopus 로고    scopus 로고
    • Important contribution to catalysis of peptide bond formation by a single ionizing group within the ribosome
    • DOI 10.1016/S1097-2765(02)00566-X
    • Katunin VI, Muth GW, Strobel SA, Wintermeyer W, Rodnina MV (2002) Important contribution to catalysis of peptide bond for mation by a single ionizing group within the ribosome. Mol Cell 10: 339-346 (Pubitemid 35007348)
    • (2002) Molecular Cell , vol.10 , Issue.2 , pp. 339-346
    • Katunin, V.I.1    Muth, G.W.2    Strobel, S.A.3    Wintermeyer, W.4    Rodnina, M.V.5
  • 15
    • 0033231562 scopus 로고    scopus 로고
    • Base-pairing between 23S rRNA and tRNA in the ribosomal A site
    • Kim DF, Green R (1999) Base-pairing between 23S rRNA and tRNA in the ribosomal A site. Mol Cell 4: 859-864
    • (1999) Mol Cell , vol.4 , pp. 859-864
    • Kim, D.F.1    Green, R.2
  • 16
    • 53249123416 scopus 로고    scopus 로고
    • Peptide-bond synthesis on the ribosome: No free vicinal hydroxy group required on the terminal ribose residue of peptidyl-tRNA
    • Koch M, Huang Y, Sprinzl M (2008) Peptide-bond synthesis on the ribosome: no free vicinal hydroxy group required on the terminal ribose residue of peptidyl-tRNA. Angew Chem Int Ed Engl 47: 7242-7245
    • (2008) Angew Chem Int Ed Engl , vol.47 , pp. 7242-7245
    • Koch, M.1    Huang, Y.2    Sprinzl, M.3
  • 17
    • 0022916242 scopus 로고
    • Transfer RNA shields specific nucleotides in 16S ribosomal RNA from attack by chemical probes
    • Moazed D, Noller HF (1986) Transfer RNA shields specific nucleo-tides in 16S ribosomal RNA from attack by chemical probes. Cell 47: 985-994 (Pubitemid 17005071)
    • (1986) Cell , vol.47 , Issue.6 , pp. 985-994
    • Moazed, D.1    Noller, H.F.2
  • 18
    • 0034637102 scopus 로고    scopus 로고
    • A single adenosine with a neutral pK(a) in the ribosomal peptidyl transferase center
    • DOI 10.1126/science.289.5481.947
    • Muth GW, Ortoleva-Donnelly L, Strobel SA (2000) A single adeno-sine with a neutral pKa in the ribosomal peptidyl transferase center. Science 289: 947-950 (Pubitemid 30659946)
    • (2000) Science , vol.289 , Issue.5481 , pp. 947-950
    • Muth, G.W.1    Ortoleva-Donnelly, L.2    Strobel, S.A.3
  • 19
    • 0034637161 scopus 로고    scopus 로고
    • The structural basis of ribosome activity in peptide bond synthesis
    • DOI 10.1126/science.289.5481.920
    • Nissen P, Hansen J, Ban N, Moore PB, Steitz TA (2000) The structural basis of ribosome activity in peptide bond synthesis. Science 289: 920-930 (Pubitemid 30659940)
    • (2000) Science , vol.289 , Issue.5481 , pp. 920-930
    • Nissen, P.1    Hansen, J.2    Ban, N.3    Moore, P.B.4    Steitz, T.A.5
  • 20
    • 0037036357 scopus 로고    scopus 로고
    • Plasticity of recognition of the 3′-end of mischarged tRNA by class I aminoacyl-tRNA synthetases
    • DOI 10.1074/jbc.M202023200
    • 0 -end of mischarged tRNA by class I aminoacyl-tRNA synthetases. J Biol Chem 277: 20510-20517 (Pubitemid 34967350)
    • (2002) Journal of Biological Chemistry , vol.277 , Issue.23 , pp. 20510-20517
    • Nordin, B.E.1    Schimmel, P.2
  • 21
    • 0032535207 scopus 로고    scopus 로고
    • Complete kinetic mechanism of elongation factor Tu-dependent binding of aminoacyl-tRNA to the A site of the E.coli ribosome
    • DOI 10.1093/emboj/17.24.7490
    • Pape T, Wintermeyer W, Rodnina MV (1998) Complete kinetic mechanism of elongation factor Tu-dependent binding of ami-noacyl-tRNA to the A site of the E-coli ribosome. EMBO J 17: 7490-7497 (Pubitemid 29002715)
    • (1998) EMBO Journal , vol.17 , Issue.24 , pp. 7490-7497
    • Pape, T.1    Wintermeyer, W.2    Rodnina, M.V.3
  • 22
    • 0035906732 scopus 로고    scopus 로고
    • Identification of thermodynamically relevant interactions between EF-Tu and backbone elements of tRNA
    • DOI 10.1006/jmbi.2001.4612
    • Pleiss JA, Uhlenbeck OC (2001) Identification of thermodynamically relevant interactions between EF-Tu and backbone elements of tRNA. J Mol Biol 308: 895-905 (Pubitemid 32574367)
    • (2001) Journal of Molecular Biology , vol.308 , Issue.5 , pp. 895-905
    • Pleiss, J.A.1    Uhlenbeck, O.C.2
  • 23
    • 0035942753 scopus 로고    scopus 로고
    • Ribosomal peptidyl transferase can withstand mutations at the putative catalytic nucleotide
    • DOI 10.1038/35078113
    • Polacek N, Gaynor M, Yassin A, Mankin AS (2001) Ribosomal peptidyl transferase can withstand mutations at the putative catalytic nucleotide. Nature 411 : 498-501 (Pubitemid 32494398)
    • (2001) Nature , vol.411 , Issue.6836 , pp. 498-501
    • Polacek, N.1    Gaynor, M.2    Yassin, A.3    Mankin, A.S.4
  • 24
    • 0037245660 scopus 로고    scopus 로고
    • The critical role of the universally conserved A2602 of 23S ribosomal RNA in the release of the nascent peptide during translation termination
    • DOI 10.1016/S1097-2765(02)00825-0, PII S1097276502008250
    • Polacek N, Gomez MJ, Ito K, Xiong L, Nakamura Y, Mankin A (2003) The critical role of the universally conserved A2602 of 23S ribosomal RNA in the release of the nascent peptide during translation termination. Mol Cell 11 : 103-112 (Pubitemid 36126594)
    • (2003) Molecular Cell , vol.11 , Issue.1 , pp. 103-112
    • Polacek, N.1    Gomez, M.J.2    Ito, K.3    Xiong, L.4    Nakamura, Y.5    Mankin, A.6
  • 25
    • 27644557445 scopus 로고    scopus 로고
    • Structural insights into the roles of water and the 2′ hydroxyl of the P site tRNA in the peptidyl transferase reaction
    • DOI 10.1016/j.molcel.2005.09.006, PII S1097276505016060
    • 0 hydroxyl of the P site tRNA in the peptidyl transferase reaction. Mol Cell 20: 437-448 (Pubitemid 41572300)
    • (2005) Molecular Cell , vol.20 , Issue.3 , pp. 437-448
    • Schmeing, T.M.1    Huang, K.S.2    Kitchen, D.E.3    Strobel, S.A.4    Steitz, T.A.5
  • 26
    • 28544452248 scopus 로고    scopus 로고
    • An induced-fit mechanism to promote peptide bond formation and exclude hydrolysis of peptidyl-tRNA
    • DOI 10.1038/nature04152, PII N04152
    • Schmeing TM, Huang KS, Strobel SA, Steitz TA (2005b) An induced-fit mechanism to promote peptide bond formation and exclude hydrolysis of peptidyl-tRNA. Nature 438: 520-524 (Pubitemid 41742026)
    • (2005) Nature , vol.438 , Issue.7067 , pp. 520-524
    • Martin Schmeing, T.1    Huang, K.S.2    Strobel, S.A.3    Steitz, T.A.4
  • 28
    • 0037040406 scopus 로고    scopus 로고
    • Regulatory nascent peptides in the ribosomal tunnel
    • DOI 10.1016/S0092-8674(02)00669-4
    • Tenson T, Ehrenberg M (2002) Regulatory nascent peptides in the ribosomal tunnel. Cell 108: 591-594 (Pubitemid 34241420)
    • (2002) Cell , vol.108 , Issue.5 , pp. 591-594
    • Tenson, T.1    Ehrenberg, M.2
  • 30
    • 0033990904 scopus 로고    scopus 로고
    • The effect of mutations in EF-Tu on its affinity for tRNA as measured by two novel and independent methods of general applicability
    • Vorstenbosch EL, Potapov AP, de Graaf JM, Kraal B (2000) The effect of mutations in EF-Tu on its affinity for tRNA as measured by two novel and independent methods of general applicability. J Biochem Biophys Methods 42: 1-14
    • (2000) J Biochem Biophys Methods , vol.42 , pp. 1-14
    • Vorstenbosch, E.L.1    Potapov, A.P.2    De Graaf, J.M.3    Kraal, B.4
  • 31
    • 0020069555 scopus 로고
    • Activity of the 2' and 3' isomers of aminoacyl transfer ribonucleic acid in the in vitro peptide elongation of Escherichia coli ribosomes
    • DOI 10.1021/bi00536a009
    • 0 isomers of aminoacyl transfer ribonucleic acid in the in vitro peptide elongation on Escherichia coli ribosomes. Biochemistry 21: 1521-1529 (Pubitemid 12128209)
    • (1982) Biochemistry , vol.21 , Issue.7 , pp. 1521-1529
    • Wagner, T.1    Cramer, F.2    Sprinzl, M.3
  • 32
    • 0020682907 scopus 로고
    • Inhibition of ribosomal translocation by peptidyl transfer ribonucleic acid analogues
    • DOI 10.1021/bi00270a013
    • Wagner T, Sprinzl M (1983) Inhibition of ribosomal translocation by peptidyl transfer ribonucleic acid analogues. Biochemistry 22: 94-98 (Pubitemid 13154151)
    • (1983) Biochemistry , vol.22 , Issue.1 , pp. 94-98
    • Wagner, T.1    Sprinzl, M.2
  • 34
    • 78149280508 scopus 로고    scopus 로고
    • Optimization of speed and accuracy of decoding in translation
    • Wohlgemuth I, Pohl C, Rodnina MV (2010) Optimization of speed and accuracy of decoding in translation. EMBO J 29: 3701-3709
    • (2010) EMBO J , vol.29 , pp. 3701-3709
    • Wohlgemuth, I.1    Pohl, C.2    Rodnina, M.V.3
  • 35
    • 2542470615 scopus 로고    scopus 로고
    • The active site of the ribosome is composed of two layers of conserved nucleotides with distinct roles in peptide bond formation and peptide release
    • DOI 10.1016/S0092-8674(04)00411-8, PII S0092867404004118
    • Youngman EM, Brunelle JL, Kochaniak AB, Green R (2004) The active site of the ribosome is composed of two layers of conserved nucleotides with distinct roles in peptide bond formation and peptide release. Cell 117: 589-599 (Pubitemid 38692525)
    • (2004) Cell , vol.117 , Issue.5 , pp. 589-599
    • Youngman, E.M.1    Brunelle, J.L.2    Kochaniak, A.B.3    Green, R.4
  • 36
    • 58149354143 scopus 로고    scopus 로고
    • Quality control by the ribosome following peptide bond formation
    • Zaher HS, Green R (2009) Quality control by the ribosome following peptide bond formation. Nature 457: 161-166
    • (2009) Nature , vol.457 , pp. 161-166
    • Zaher, H.S.1    Green, R.2
  • 37
    • 77954298382 scopus 로고    scopus 로고
    • Hyperaccurate and error-prone ribo-somes exploit distinct mechanisms during tRNA selection
    • Zaher HS, Green R (2010a) Hyperaccurate and error-prone ribo-somes exploit distinct mechanisms during tRNA selection. Mol Cell 39: 110-120
    • (2010) Mol Cell , vol.39 , pp. 110-120
    • Zaher, H.S.1    Green, R.2
  • 38
    • 77957307036 scopus 로고    scopus 로고
    • Kinetic basis for global loss of fidelity arising from mismatches in the P-site codon anticodon helix
    • Zaher HS, Green R (2010b) Kinetic basis for global loss of fidelity arising from mismatches in the P-site codon anticodon helix. RNA 16: 1980-1989
    • (2010) RNA , vol.16 , pp. 1980-1989
    • Zaher, H.S.1    Green, R.2
  • 39
    • 2942750311 scopus 로고    scopus 로고
    • T7 RNA polymerase mediates fast promoter-independent extension of unstable nucleic acid complexes
    • DOI 10.1021/bi0497300
    • Zaher HS, Unrau PJ (2004) T7 RNA polymerase mediates fast promoter-independent extension of unstable nucleic acid complexes. Biochemistry 43: 7873-7880 (Pubitemid 38787696)
    • (2004) Biochemistry , vol.43 , Issue.24 , pp. 7873-7880
    • Zaher, H.S.1    Unrau, P.J.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.