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Volumn 29, Issue 21, 2010, Pages 3701-3709

Optimization of speed and accuracy of decoding in translation

Author keywords

fidelity; rapid kinetics; ribosome; translation; tRNA selection

Indexed keywords

DIPEPTIDE; GUANOSINE TRIPHOSPHATE; TRANSFER RNA;

EID: 78149280508     PISSN: 02614189     EISSN: 14602075     Source Type: Journal    
DOI: 10.1038/emboj.2010.229     Document Type: Article
Times cited : (87)

References (41)
  • 1
    • 33745071762 scopus 로고    scopus 로고
    • Peptide bond formation does not involve acid-base catalysis by ribosomal residues
    • Bieling P, Beringer M, Adio S, Rodnina MV (2006) Peptide bond formation does not involve acid-base catalysis by ribosomal residues. Nat Struct Mol Biol 13: 423-428
    • (2006) Nat Struct Mol Biol , vol.13 , pp. 423-428
    • Bieling, P.1    Beringer, M.2    Adio, S.3    Rodnina, M.V.4
  • 2
    • 0024280019 scopus 로고
    • Is translation inhibited by noncognate ternary complexes?
    • Bilgin N, Ehrenberg M, Kurland C (1988) Is translation inhibited by noncognate ternary complexes? FEBS Lett 233: 95-99
    • (1988) FEBS Lett , vol.233 , pp. 95-99
    • Bilgin, N.1    Ehrenberg, M.2    Kurland, C.3
  • 4
    • 0000640710 scopus 로고
    • Modulation of chemical composition and other parameters of the cell by growth rate
    • Neidhardt FC (ed) Washington, DC: American Society for Microbiology
    • Bremer H, Dennis PP (1987) Modulation of chemical composition and other parameters of the cell by growth rate. In Escherichia coli and Salmonella typhimurium: cellular and molecular biology, Neidhardt FC (ed), pp 1553-1569. Washington, DC: American Society for Microbiology
    • (1987) Escherichia Coli and Salmonella Typhimurium: Cellular and Molecular Biology , pp. 1553-1569
    • Bremer, H.1    Dennis, P.P.2
  • 5
    • 18844408328 scopus 로고    scopus 로고
    • An active role for tRNA in decoding beyond codon:anticodon pairing
    • Cochella L, Green R (2005) An active role for tRNA in decoding beyond codon:anticodon pairing. Science 308: 1178-1180
    • (2005) Science , vol.308 , pp. 1178-1180
    • Cochella, L.1    Green, R.2
  • 6
    • 33747886005 scopus 로고    scopus 로고
    • The ribosome's response to codon-anticodon mismatches
    • Daviter T, Gromadski KB, Rodnina MV (2006) The ribosome's response to codon-anticodon mismatches. Biochimie 88: 1001-1011
    • (2006) Biochimie , vol.88 , pp. 1001-1011
    • Daviter, T.1    Gromadski, K.B.2    Rodnina, M.V.3
  • 8
    • 70349333227 scopus 로고    scopus 로고
    • The evolutionary consequences of erroneous protein synthesis
    • Drummond DA, Wilke CO (2009) The evolutionary consequences of erroneous protein synthesis. Nat Rev Genet 10 : 715-724
    • (2009) Nat Rev Genet , vol.10 , pp. 715-724
    • Drummond, D.A.1    Wilke, C.O.2
  • 9
    • 31544454704 scopus 로고    scopus 로고
    • A uniform response to mismatches in codon-anticodon complexes ensures ribosomal fidelity
    • Gromadski KB, Daviter T, Rodnina MV (2006) A uniform response to mismatches in codon-anticodon complexes ensures ribosomal fidelity. Mol Cell 21: 369-377
    • (2006) Mol Cell , vol.21 , pp. 369-377
    • Gromadski, K.B.1    Daviter, T.2    Rodnina, M.V.3
  • 10
    • 0842267211 scopus 로고    scopus 로고
    • Kinetic determinants of high-fidelity tRNA discrimination on the ribosome
    • Gromadski KB, Rodnina MV (2004a) Kinetic determinants of high-fidelity tRNA discrimination on the ribosome. Mol Cell 13: 191-200
    • (2004) Mol Cell , vol.13 , pp. 191-200
    • Gromadski, K.B.1    Rodnina, M.V.2
  • 11
    • 1842420639 scopus 로고    scopus 로고
    • Streptomycin interferes with conformational coupling between codon recognition and GTPase activation on the ribosome
    • Gromadski KB, Rodnina MV (2004b) Streptomycin interferes with conformational coupling between codon recognition and GTPase activation on the ribosome. Nat Struct Mol Biol 11 : 316-322
    • (2004) Nat Struct Mol Biol , vol.11 , pp. 316-322
    • Gromadski, K.B.1    Rodnina, M.V.2
  • 12
    • 44449089912 scopus 로고    scopus 로고
    • The kinetics of ribosomal peptidyl transfer revisited
    • Johansson M, Bouakaz E, Lovmar M, Ehrenberg M (2008) The kinetics of ribosomal peptidyl transfer revisited. Mol Cell 30: 589-598
    • (2008) Mol Cell , vol.30 , pp. 589-598
    • Johansson, M.1    Bouakaz, E.2    Lovmar, M.3    Ehrenberg, M.4
  • 13
    • 33845995459 scopus 로고    scopus 로고
    • Ala with modified uridine in the wobble position
    • Ala with modified uridine in the wobble position. Mol Cell 25: 167-174
    • (2007) Mol Cell , vol.25 , pp. 167-174
    • Kothe, U.1    Rodnina, M.V.2
  • 14
    • 33845895536 scopus 로고    scopus 로고
    • The frequency of translational misreading errors in E. coli is largely determined by tRNA competition
    • Kramer EB, Farabaugh PJ (2007) The frequency of translational misreading errors in E. coli is largely determined by tRNA competition. RNA 13: 87-96
    • (2007) RNA , vol.13 , pp. 87-96
    • Kramer, E.B.1    Farabaugh, P.J.2
  • 16
    • 0034075255 scopus 로고    scopus 로고
    • MRNA composition and control of bacterial gene expression
    • Liang ST, Xu YC, Dennis P, Bremer H (2000) mRNA composition and control of bacterial gene expression. J Bacteriol 182: 3037-3044
    • (2000) J Bacteriol , vol.182 , pp. 3037-3044
    • Liang, S.T.1    Xu, Y.C.2    Dennis, P.3    Bremer, H.4
  • 17
    • 33747889204 scopus 로고    scopus 로고
    • Rate, accuracy and cost of ribo-somes in bacterial cells
    • Lovmar M, Ehrenberg M (2006) Rate, accuracy and cost of ribo-somes in bacterial cells. Biochimie 88: 951-961
    • (2006) Biochimie , vol.88 , pp. 951-961
    • Lovmar, M.1    Ehrenberg, M.2
  • 18
    • 0019328869 scopus 로고
    • Determination of magnesium and potassium binding constants to phosphoenolpyruvate, 2-and 3-phosphogly-cerate and a number of other anions
    • Manchester KL (1980) Determination of magnesium and potassium binding constants to phosphoenolpyruvate, 2-and 3-phosphogly-cerate and a number of other anions. Biochim Biophys Acta 630: 225-231
    • (1980) Biochim Biophys Acta , vol.630 , pp. 225-231
    • Manchester, K.L.1
  • 19
    • 0018387376 scopus 로고
    • Activity of protein synthesis initiation factors in cytosol from rat liver and muscle and ascites cells
    • Manchester KL, Alford T (1979) Activity of protein synthesis initiation factors in cytosol from rat liver and muscle and ascites cells. Biochim Biophys Acta 563: 155-162
    • (1979) Biochim Biophys Acta , vol.563 , pp. 155-162
    • Manchester, K.L.1    Alford, T.2
  • 21
    • 0030844281 scopus 로고    scopus 로고
    • Recombination of protein domains facilitated by co-translational folding in eukaryotes
    • Netzer WJ, Hartl FU (1997) Recombination of protein domains facilitated by co-translational folding in eukaryotes. Nature 388: 343-349
    • (1997) Nature , vol.388 , pp. 343-349
    • Netzer, W.J.1    Hartl, F.U.2
  • 23
    • 0037184536 scopus 로고    scopus 로고
    • Selection of tRNA by the ribosome requires a transition from an open to a closed form
    • Ogle JM, Murphy FV, Tarry MJ, Ramakrishnan V (2002) Selection of tRNA by the ribosome requires a transition from an open to a closed form. Cell 111 : 721-732
    • (2002) Cell , vol.111 , pp. 721-732
    • Ogle, J.M.1    Murphy, F.V.2    Tarry, M.J.3    Ramakrishnan, V.4
  • 24
    • 49649091161 scopus 로고    scopus 로고
    • Perturbation of the tRNA tertiary core differentially affects specific steps of the elongation cycle
    • Pan D, Zhang CM, Kirillov S, Hou YM, Cooperman BS (2008) Perturbation of the tRNA tertiary core differentially affects specific steps of the elongation cycle. J Biol Chem 283: 18431-18440
    • (2008) J Biol Chem , vol.283 , pp. 18431-18440
    • Pan, D.1    Zhang, C.M.2    Kirillov, S.3    Hou, Y.M.4    Cooperman, B.S.5
  • 25
    • 0033168212 scopus 로고    scopus 로고
    • Induced fit in initial selection and proofreading of aminoacyl-tRNA on the ribosome
    • Pape T, Wintermeyer W, Rodnina M (1999) Induced fit in initial selection and proofreading of aminoacyl-tRNA on the ribosome. EMBO J 18: 3800-3807
    • (1999) EMBO J , vol.18 , pp. 3800-3807
    • Pape, T.1    Wintermeyer, W.2    Rodnina, M.3
  • 26
    • 0032535207 scopus 로고    scopus 로고
    • Complete kinetic mechanism of elongation factor Tu-dependent binding of ami-noacyl-tRNA to the A site of the E. coli ribosome
    • Pape T, Wintermeyer W, Rodnina MV (1998) Complete kinetic mechanism of elongation factor Tu-dependent binding of ami-noacyl-tRNA to the A site of the E. coli ribosome. EMBO J 17: 7490-7497
    • (1998) EMBO J , vol.17 , pp. 7490-7497
    • Pape, T.1    Wintermeyer, W.2    Rodnina, M.V.3
  • 27
    • 0024722501 scopus 로고
    • Errors and alternatives in reading the universal genetic code
    • Parker J (1989) Errors and alternatives in reading the universal genetic code. Microbiol Rev 53: 273-298
    • (1989) Microbiol Rev , vol.53 , pp. 273-298
    • Parker, J.1
  • 29
    • 77951589688 scopus 로고    scopus 로고
    • Cooperation between translating ribosomes and RNA polymerase in transcription elongation
    • Proshkin S, Rahmouni AR, Mironov A, Nudler E (2010) Cooperation between translating ribosomes and RNA polymerase in transcription elongation. Science 328: 504-508
    • (2010) Science , vol.328 , pp. 504-508
    • Proshkin, S.1    Rahmouni, A.R.2    Mironov, A.3    Nudler, E.4
  • 30
    • 0029006133 scopus 로고
    • Codon-dependent conformational change of elongation factor Tu preceding GTP hydrolysis on the ribosome
    • Rodnina MV, Fricke R, Kuhn L, Wintermeyer W (1995) Codon-dependent conformational change of elongation factor Tu preceding GTP hydrolysis on the ribosome. EMBO J 14: 2613-2619
    • (1995) EMBO J , vol.14 , pp. 2613-2619
    • Rodnina, M.V.1    Fricke, R.2    Kuhn, L.3    Wintermeyer, W.4
  • 31
    • 0028109919 scopus 로고
    • Transient conforma-tional states of aminoacyl-tRNA during ribosome binding catalyzed by elongation factor Tu
    • Rodnina MV, Fricke R, Wintermeyer W (1994) Transient conforma-tional states of aminoacyl-tRNA during ribosome binding catalyzed by elongation factor Tu. Biochemistry 33: 12267-12275
    • (1994) Biochemistry , vol.33 , pp. 12267-12275
    • Rodnina, M.V.1    Fricke, R.2    Wintermeyer, W.3
  • 32
    • 0030047916 scopus 로고    scopus 로고
    • Initial binding of the elongation factor Tu GTP aminoacyl-tRNA complex preceding codon recognition on the ribosome
    • Rodnina MV, Pape T, Fricke R, Kuhn L, Wintermeyer W (1996) Initial binding of the elongation factor Tu GTP aminoacyl-tRNA complex preceding codon recognition on the ribosome. J Biol Chem 271: 646-652
    • (1996) J Biol Chem , vol.271 , pp. 646-652
    • Rodnina, M.V.1    Pape, T.2    Fricke, R.3    Kuhn, L.4    Wintermeyer, W.5
  • 33
    • 0034923932 scopus 로고    scopus 로고
    • Fidelity of aminoacyl-tRNA selection on the ribosome: Kinetic and structural mechanisms
    • Rodnina MV, Wintermeyer W (2001) Fidelity of aminoacyl-tRNA selection on the ribosome: kinetic and structural mechanisms. Annu Rev Biochem 70: 415-435
    • (2001) Annu Rev Biochem , vol.70 , pp. 415-435
    • Rodnina, M.V.1    Wintermeyer, W.2
  • 34
    • 0020337390 scopus 로고
    • Is there proofreading during polypeptide synthesis?
    • Ruusala T, Ehrenberg M, Kurland CG (1982) Is there proofreading during polypeptide synthesis? EMBO J 1: 741-745
    • (1982) EMBO J , vol.1 , pp. 741-745
    • Ruusala, T.1    Ehrenberg, M.2    Kurland, C.G.3
  • 37
    • 0026409389 scopus 로고
    • Absolute in vivo translation rates of individual codons in Escherichia coli. The two glutamic acid codons GAA and GAG are translated with a threefold difference in rate
    • Sorensen MA, Pedersen S (1991) Absolute in vivo translation rates of individual codons in Escherichia coli. The two glutamic acid codons GAA and GAG are translated with a threefold difference in rate. J Mol Biol 222: 265-280
    • (1991) J Mol Biol , vol.222 , pp. 265-280
    • Sorensen, M.A.1    Pedersen, S.2
  • 38
    • 0004962793 scopus 로고
    • The accuracy of protein biosynthesis is limited by its speed: High fidelity selection by ribosomes of aminoacyl-tRNA ternary complexes containing GTPgS
    • Thompson RC, Karim AM (1982) The accuracy of protein biosynthesis is limited by its speed: high fidelity selection by ribosomes of aminoacyl-tRNA ternary complexes containing GTPgS. Proc Natl Acad Sci USA 79: 4922-4926
    • (1982) Proc Natl Acad Sci USA , vol.79 , pp. 4922-4926
    • Thompson, R.C.1    Karim, A.M.2
  • 39
    • 0004955452 scopus 로고
    • Proofreading of the codon-anticodon interaction on ribosomes
    • Thompson RC, Stone PJ (1977) Proofreading of the codon-anticodon interaction on ribosomes. Proc Natl Acad Sci USA 74: 198-202
    • (1977) Proc Natl Acad Sci USA , vol.74 , pp. 198-202
    • Thompson, R.C.1    Stone, P.J.2
  • 41
    • 58149354143 scopus 로고    scopus 로고
    • Quality control by the ribosome following peptide bond formation
    • Zaher HS, Green R (2009) Quality control by the ribosome following peptide bond formation. Nature 457: 161-166
    • (2009) Nature , vol.457 , pp. 161-166
    • Zaher, H.S.1    Green, R.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.