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Volumn 4, Issue 5, 1999, Pages 859-864

Base-pairing between 23S rRNA and tRNA in the ribosomal A site

Author keywords

[No Author keywords available]

Indexed keywords

2,6 DIAMINOPURINE; AMINOACYL TRANSFER RNA; PEPTIDYLTRANSFERASE; RIBOSOME RNA;

EID: 0033231562     PISSN: 10972765     EISSN: None     Source Type: Journal    
DOI: 10.1016/S1097-2765(00)80395-0     Document Type: Article
Times cited : (175)

References (42)
  • 1
    • 0033607003 scopus 로고    scopus 로고
    • Placement of protein and RNA structures into the 5 Å-resolution map of the 50S ribosomal subunit
    • Ban, N., Nissen, P., Hansen, J., Capel, M., Moore, P.B., and Steitz, T.A. (1999). Placement of protein and RNA structures into the 5 Å-resolution map of the 50S ribosomal subunit. Nature 400, 841-847.
    • (1999) Nature , vol.400 , pp. 841-847
    • Ban, N.1    Nissen, P.2    Hansen, J.3    Capel, M.4    Moore, P.B.5    Steitz, T.A.6
  • 2
    • 0020491606 scopus 로고
    • The peptidyltransferase center of Escherichia coli ribosomes: Binding sites for the cytidine 3′-phosphate residues of the aminoacyl-tRNA 3′-terminus and the interrelationships between the acceptor and donor sites
    • Bhuta, P., Kumar, G., and Chladek, S. (1982). The peptidyltransferase center of Escherichia coli ribosomes: binding sites for the cytidine 3′-phosphate residues of the aminoacyl-tRNA 3′-terminus and the interrelationships between the acceptor and donor sites. Biochim. Biophys. Acta 696, 208-211.
    • (1982) Biochim. Biophys. Acta , vol.696 , pp. 208-211
    • Bhuta, P.1    Kumar, G.2    Chladek, S.3
  • 3
    • 0032584065 scopus 로고    scopus 로고
    • 23S rRNA positions essential for tRNA binding in ribosomal functional sites
    • Bocchetta, M., Xiong, L., and Mankin, A.S. (1998). 23S rRNA positions essential for tRNA binding in ribosomal functional sites. Proc. Natl. Acad. Sci. USA 95, 3525-3530.
    • (1998) Proc. Natl. Acad. Sci. USA , vol.95 , pp. 3525-3530
    • Bocchetta, M.1    Xiong, L.2    Mankin, A.S.3
  • 4
    • 0032881809 scopus 로고    scopus 로고
    • X-ray crystal structures of 70S ribosome functional complexes
    • Cate, J.H., Yusupov, M.M., Yusupova, G.Z., Earnest, T.N., and Noller, H.F. (1999). X-ray crystal structures of 70S ribosome functional complexes. Science 285, 2095-2104.
    • (1999) Science , vol.285 , pp. 2095-2104
    • Cate, J.H.1    Yusupov, M.M.2    Yusupova, G.Z.3    Earnest, T.N.4    Noller, H.F.5
  • 6
    • 0017393537 scopus 로고
    • Action of single-strand specific nucleases on model DNA heteroduplexes of defined size and sequence
    • Dodgson, J.B., and Wells, R.D. (1977a). Action of single-strand specific nucleases on model DNA heteroduplexes of defined size and sequence. Biochemistry 16, 2374-2379.
    • (1977) Biochemistry , vol.16 , pp. 2374-2379
    • Dodgson, J.B.1    Wells, R.D.2
  • 7
    • 0017404058 scopus 로고
    • Synthesis and thermal melting behavior of oligomer-polymer complexes containing defined lengths of mismatched dA-dG and dG-dG nucleotides
    • Dodgson, J.B., and Wells, R.D. (1977b). Synthesis and thermal melting behavior of oligomer-polymer complexes containing defined lengths of mismatched dA-dG and dG-dG nucleotides. Biochemistry 16, 2367-2374.
    • (1977) Biochemistry , vol.16 , pp. 2367-2374
    • Dodgson, J.B.1    Wells, R.D.2
  • 8
    • 0016000287 scopus 로고
    • Reconstitution of 50 S ribosomal subunits from Bacillus stearothermophilus
    • Fahnestock, S., Erdmann, V., and Nomura, M. (1974). Reconstitution of 50 S ribosomal subunits from Bacillus stearothermophilus. Methods Enzymol. 30, 554-562.
    • (1974) Methods Enzymol. , vol.30 , pp. 554-562
    • Fahnestock, S.1    Erdmann, V.2    Nomura, M.3
  • 9
    • 0029903805 scopus 로고    scopus 로고
    • In vitro complementation analysis localizes 23S rRNA posttranscriptional modifications that are required for Escherichia coli 50S ribosomal subunit assembly and function
    • Green, R., and Noller, H.F. (1996). In vitro complementation analysis localizes 23S rRNA posttranscriptional modifications that are required for Escherichia coli 50S ribosomal subunit assembly and function. RNA 2, 1011-1021.
    • (1996) RNA , vol.2 , pp. 1011-1021
    • Green, R.1    Noller, H.F.2
  • 10
    • 0030970289 scopus 로고    scopus 로고
    • Ribosomes and translation
    • Green, R., and Noller, H.F. (1997). Ribosomes and translation. Annu. Rev. Biochem. 66, 679-716.
    • (1997) Annu. Rev. Biochem. , vol.66 , pp. 679-716
    • Green, R.1    Noller, H.F.2
  • 11
    • 0032972963 scopus 로고    scopus 로고
    • Reconstitution of functional 50S ribosomes from in vitro transcripts of Bacillus stearothermophilus 23S rRNA
    • Green, R., and Noller, H.F. (1999). Reconstitution of functional 50S ribosomes from in vitro transcripts of Bacillus stearothermophilus 23S rRNA. Biochemistry 38, 1772-1779.
    • (1999) Biochemistry , vol.38 , pp. 1772-1779
    • Green, R.1    Noller, H.F.2
  • 12
    • 0031566952 scopus 로고    scopus 로고
    • Mutations at nucleotides G2251 and U2585 of 23 S rRNA perturb the peptidyl transferase center of the ribosome
    • Green, R., Samaha, R.R., and Noller, H.F. (1997). Mutations at nucleotides G2251 and U2585 of 23 S rRNA perturb the peptidyl transferase center of the ribosome. J. Mol. Biol. 266, 40-50.
    • (1997) J. Mol. Biol. , vol.266 , pp. 40-50
    • Green, R.1    Samaha, R.R.2    Noller, H.F.3
  • 13
    • 0032502997 scopus 로고    scopus 로고
    • Ribosome-catalyzed peptide-bond formation with an A-site substrate covalently linked to 23S ribosomal RNA
    • Green, R., Switzer, C., and Noller, H.F. (1998). Ribosome-catalyzed peptide-bond formation with an A-site substrate covalently linked to 23S ribosomal RNA. Science 280, 286-289.
    • (1998) Science , vol.280 , pp. 286-289
    • Green, R.1    Switzer, C.2    Noller, H.F.3
  • 14
    • 0026539417 scopus 로고
    • A compilation of large subunit (23S-and 23S-like) ribosomal RNA structures
    • Gutell, R.R., Schnare, M.N., and Gray, M.W. (1992). A compilation of large subunit (23S-and 23S-like) ribosomal RNA structures. Nucleic Acids Res. 20 (Suppl.), 2095-2109.
    • (1992) Nucleic Acids Res. , vol.20 , Issue.SUPPL. , pp. 2095-2109
    • Gutell, R.R.1    Schnare, M.N.2    Gray, M.W.3
  • 15
    • 0031215115 scopus 로고    scopus 로고
    • Surprising fidelity of template-directed chemical ligation of oligonucleotides
    • James, K.D., and Ellington, A.D. (1997). Surprising fidelity of template-directed chemical ligation of oligonucleotides. Chem. Biol. 4, 595-605.
    • (1997) Chem. Biol. , vol.4 , pp. 595-605
    • James, K.D.1    Ellington, A.D.2
  • 16
    • 0030904329 scopus 로고    scopus 로고
    • Movement of the 3′-end of tRNA through the peptidyl transferase centre and its inhibition by antibiotics
    • Kirillov, S., Porse, B.T., Vester, B., Woolley, P., and Garrett, R.A. (1997). Movement of the 3′-end of tRNA through the peptidyl transferase centre and its inhibition by antibiotics. FEBS Lett. 406, 223-233.
    • (1997) FEBS Lett. , vol.406 , pp. 223-233
    • Kirillov, S.1    Porse, B.T.2    Vester, B.3    Woolley, P.4    Garrett, R.A.5
  • 17
    • 0028292389 scopus 로고
    • The importance of conserved nucleotides of 23 S ribosomal RNA and transfer RNA in ribosome catalyzed peptide bond formation
    • Lieberman, K.R., and Dahlberg, A.E. (1994). The importance of conserved nucleotides of 23 S ribosomal RNA and transfer RNA in ribosome catalyzed peptide bond formation. J. Biol. Chem. 269, 16163-16169.
    • (1994) J. Biol. Chem. , vol.269 , pp. 16163-16169
    • Lieberman, K.R.1    Dahlberg, A.E.2
  • 19
    • 0033534197 scopus 로고    scopus 로고
    • Nucleotides in 16S rRNA protected by the association of 30S and 50S ribosomal subunits
    • Merryman, C., Moazed, D., McWhirter, J., and Noller, H.F. (1999a). Nucleotides in 16S rRNA protected by the association of 30S and 50S ribosomal subunits. J. Mol. Biol. 285, 97-105.
    • (1999) J. Mol. Biol. , vol.285 , pp. 97-105
    • Merryman, C.1    Moazed, D.2    McWhirter, J.3    Noller, H.F.4
  • 20
    • 0033534198 scopus 로고    scopus 로고
    • Nucleotides in 23S rRNA protected by the association of 30S and 50S ribosomal subunits
    • Merryman, C., Moazed, D., Daubresse, G., and Noller, H.F. (1999b). Nucleotides in 23S rRNA protected by the association of 30S and 50S ribosomal subunits. J. Mol. Biol. 285, 107-113.
    • (1999) J. Mol. Biol. , vol.285 , pp. 107-113
    • Merryman, C.1    Moazed, D.2    Daubresse, G.3    Noller, H.F.4
  • 21
    • 0024334898 scopus 로고
    • Interaction of tRNA with 23S rRNA in the ribosomal A, P, and E sites
    • Moazed, D., and Noller, H.F. (1989). Interaction of tRNA with 23S rRNA in the ribosomal A, P, and E sites. Cell 57, 585-597.
    • (1989) Cell , vol.57 , pp. 585-597
    • Moazed, D.1    Noller, H.F.2
  • 22
    • 0014219393 scopus 로고
    • Ribosome-catalysed reaction of puromycin with a formylmethionine-containing oligonucleotide
    • Monro, R.E., and Marcker, K.A. (1967). Ribosome-catalysed reaction of puromycin with a formylmethionine-containing oligonucleotide. J. Mol. Biol. 25, 347-350.
    • (1967) J. Mol. Biol. , vol.25 , pp. 347-350
    • Monro, R.E.1    Marcker, K.A.2
  • 23
    • 0026605043 scopus 로고
    • U5 snRNA interacts with exon sequences at 5′ and 3′ splice sites
    • Newman, A.J., and Norman, C. (1992). U5 snRNA interacts with exon sequences at 5′ and 3′ splice sites. Cell 68, 743-754.
    • (1992) Cell , vol.68 , pp. 743-754
    • Newman, A.J.1    Norman, C.2
  • 24
    • 0019830772 scopus 로고
    • Secondary structure of 16S ribosomal RNA
    • Noller, H.F., and Woese, C.R. (1981). Secondary structure of 16S ribosomal RNA. Science 212, 403-411.
    • (1981) Science , vol.212 , pp. 403-411
    • Noller, H.F.1    Woese, C.R.2
  • 26
    • 0014428721 scopus 로고
    • Hybrid 30S ribosomal particles reconstituted from components of different bacterial origins
    • Nomura, M., Traub, P., and Bechmann, H. (1968). Hybrid 30S ribosomal particles reconstituted from components of different bacterial origins. Nature 219, 793-799.
    • (1968) Nature , vol.219 , pp. 793-799
    • Nomura, M.1    Traub, P.2    Bechmann, H.3
  • 27
    • 0027375408 scopus 로고
    • Mutations at U2555, a trna-protected base in 23S rRNA, affect translational fidelity
    • O'Connor, M., and Dahlberg, A.E. (1993). Mutations at U2555, a tRNA-protected base in 23S rRNA, affect translational fidelity. Proc. Natl. Acad. Sci. USA 90, 9214-9218.
    • (1993) Proc. Natl. Acad. Sci. USA , vol.90 , pp. 9214-9218
    • O'Connor, M.1    Dahlberg, A.E.2
  • 29
    • 0026782117 scopus 로고
    • Use of 50 S-binding antibiotics to characterize the ribosomal site to which peptidyl-tRNA is bound
    • Odom, O.W., and Hardesty, B. (1992). Use of 50 S-binding antibiotics to characterize the ribosomal site to which peptidyl-tRNA is bound. J. Biol. Chem. 267, 19117-19122.
    • (1992) J. Biol. Chem. , vol.267 , pp. 19117-19122
    • Odom, O.W.1    Hardesty, B.2
  • 30
    • 0021754242 scopus 로고
    • Deoxyguanosine-deoxyadenosine pairing in the d(C-G-A-G-A-A-T-T-C-G-C-G) duplex: Conformation and dynamics at and adjacent to the dG X dA mismatch site
    • Patel, D.J., Kozlowski, S.A., Ikuta, S., and Itakura, K. (1984). Deoxyguanosine-deoxyadenosine pairing in the d(C-G-A-G-A-A-T-T-C-G-C-G) duplex: conformation and dynamics at and adjacent to the dG X dA mismatch site. Biochemistry 23, 3207-3217.
    • (1984) Biochemistry , vol.23 , pp. 3207-3217
    • Patel, D.J.1    Kozlowski, S.A.2    Ikuta, S.3    Itakura, K.4
  • 31
    • 0029011424 scopus 로고
    • Mapping important nucleotides in the peptidyl transferase centre of 23 S rRNA using a random mutagenesis approach
    • Porse, B.T., and Garrett, R.A. (1995). Mapping important nucleotides in the peptidyl transferase centre of 23 S rRNA using a random mutagenesis approach. J. Mol. Biol. 249, 1-10.
    • (1995) J. Mol. Biol. , vol.249 , pp. 1-10
    • Porse, B.T.1    Garrett, R.A.2
  • 32
    • 0030573006 scopus 로고    scopus 로고
    • The donor substrate site within the peptidyl transferase loop of 23 S rRNA and its putative interactions with the CCA-end of N-blocked aminoacyl-tRNA(Phe)
    • Porse, B.T., Thi-Ngoc, H.P., and Garrett, R.A. (1996). The donor substrate site within the peptidyl transferase loop of 23 S rRNA and its putative interactions with the CCA-end of N-blocked aminoacyl-tRNA(Phe). J. Mol. Biol. 264, 472-483.
    • (1996) J. Mol. Biol. , vol.264 , pp. 472-483
    • Porse, B.T.1    Thi-Ngoc, H.P.2    Garrett, R.A.3
  • 33
    • 0031252479 scopus 로고    scopus 로고
    • Structure of a conserved RNA component of the peptidyl transferase centre
    • Puglisi, E.V., Green, R., Noller, H.F., and Puglisi, J.D. (1997). Structure of a conserved RNA component of the peptidyl transferase centre. Nat. Struct. Biol. 4, 775-778.
    • (1997) Nat. Struct. Biol. , vol.4 , pp. 775-778
    • Puglisi, E.V.1    Green, R.2    Noller, H.F.3    Puglisi, J.D.4
  • 34
    • 0031942486 scopus 로고    scopus 로고
    • Mutational analysis of the donor substrate binding site of the ribosomal peptidyltransferase center
    • Saarma, U., Spahn, C.M., Nierhaus, K.H., and Remme, J. (1998). Mutational analysis of the donor substrate binding site of the ribosomal peptidyltransferase center. RNA 4, 189-194.
    • (1998) RNA , vol.4 , pp. 189-194
    • Saarma, U.1    Spahn, C.M.2    Nierhaus, K.H.3    Remme, J.4
  • 35
    • 0029085929 scopus 로고    scopus 로고
    • A base pair between tRNA and 23S rRNA in the peptidyl transferase centre of the ribosome
    • Samaha, R.R., Green, R., and Noller, H.F. (1995). A base pair between tRNA and 23S rRNA in the peptidyl transferase centre of the ribosome. Nature 377, 309-14. Erratum 378, 419.
    • (1995) Nature , vol.377 , pp. 309-314
    • Samaha, R.R.1    Green, R.2    Noller, H.F.3
  • 36
    • 0029085929 scopus 로고    scopus 로고
    • Samaha, R.R., Green, R., and Noller, H.F. (1995). A base pair between tRNA and 23S rRNA in the peptidyl transferase centre of the ribosome. Nature 377, 309-14. Erratum 378, 419.
    • Erratum , vol.378 , pp. 419
  • 37
    • 0027739853 scopus 로고    scopus 로고
    • The U5 and U6 small nuclear RNAs as active site components of the spliceosome
    • Sontheimer, E.J., and Steitz, J.A. (1993). The U5 and U6 small nuclear RNAs as active site components of the spliceosome. Science 262, 1989-1996. Erratum 263, 739.
    • (1993) Science , vol.262 , pp. 1989-1996
    • Sontheimer, E.J.1    Steitz, J.A.2
  • 38
    • 0027739853 scopus 로고    scopus 로고
    • Sontheimer, E.J., and Steitz, J.A. (1993). The U5 and U6 small nuclear RNAs as active site components of the spliceosome. Science 262, 1989-1996. Erratum 263, 739.
    • Erratum , vol.263 , pp. 739
  • 39
    • 12644274577 scopus 로고    scopus 로고
    • Mutational analysis of two highly conserved UGG sequences of 23 S rRNA from Escherichia coli
    • Spahn, C.M.T., Remme, J., Schafer, M.A., and Nierhaus, K.H. (1996a). Mutational analysis of two highly conserved UGG sequences of 23 S rRNA from Escherichia coli. J. Biol. Chem. 271, 32849-32856.
    • (1996) J. Biol. Chem. , vol.271 , pp. 32849-32856
    • Spahn, C.M.T.1    Remme, J.2    Schafer, M.A.3    Nierhaus, K.H.4
  • 40
    • 12644257881 scopus 로고    scopus 로고
    • Conserved nucleotides of 23 S rRNA located at the ribosomal peptidyltransferase center
    • Spahn, C.M.T., Schafer, M.A., Krayevsky, A.A., and Nierhaus, K.H. (1996b). Conserved nucleotides of 23 S rRNA located at the ribosomal peptidyltransferase center. J. Biol. Chem. 271, 32857-32862.
    • (1996) J. Biol. Chem. , vol.271 , pp. 32857-32862
    • Spahn, C.M.T.1    Schafer, M.A.2    Krayevsky, A.A.3    Nierhaus, K.H.4
  • 41
    • 0024227741 scopus 로고
    • Photo-affinity labelling at the peptidyl transferase centre reveals two different positions for the A-and P-sites in domain V of 23S rRNA
    • Steiner, G., Kuechler, E., and Barta, A. (1988). Photo-affinity labelling at the peptidyl transferase centre reveals two different positions for the A-and P-sites in domain V of 23S rRNA. EMBO J. 7, 3949-3955.
    • (1988) EMBO J. , vol.7 , pp. 3949-3955
    • Steiner, G.1    Kuechler, E.2    Barta, A.3
  • 42
    • 0025021925 scopus 로고
    • Effect of nucleotide substitution on the peptidyltransferase activity of 2′(3′)-O-(aminoacyl) oligonucleotides
    • Tezuka, M., and Chladek, S. (1990). Effect of nucleotide substitution on the peptidyltransferase activity of 2′(3′)-O-(aminoacyl) oligonucleotides. Biochemistry 29, 667-670.
    • (1990) Biochemistry , vol.29 , pp. 667-670
    • Tezuka, M.1    Chladek, S.2


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