메뉴 건너뛰기




Volumn 31, Issue 22, 2003, Pages 6536-6542

Mononucleotide derivatives as ribosomal P-site substrates reveal an important contribution of the 2′-OH to activity

Author keywords

[No Author keywords available]

Indexed keywords

ACID; ADENOSINE PHOSPHATE; BASE; CYTIDINE; CYTIDINE PHOSPHATE; CYTOSINE; HYDROXYL GROUP; NUCLEOTIDE DERIVATIVE; PEPTIDYLTRANSFERASE; PHENYLALANINE TRANSFER RNA; RIBOSOME PROTEIN; RIBOSOME RNA;

EID: 0345099498     PISSN: 03051048     EISSN: None     Source Type: Journal    
DOI: 10.1093/nar/gkg842     Document Type: Article
Times cited : (82)

References (28)
  • 1
    • 0014219393 scopus 로고
    • Ribosome-catalysed reaction of puromycin with a formylmethionine-containing oligonucleotide
    • Monro, R.E. and Marcker, K.A. (1967) Ribosome-catalysed reaction of puromycin with a formylmethionine-containing oligonucleotide. J. Mol. Biol., 25, 347-350.
    • (1967) J. Mol. Biol. , vol.25 , pp. 347-350
    • Monro, R.E.1    Marcker, K.A.2
  • 2
    • 0014360492 scopus 로고
    • Ribosome-catalyzed peptidyl transfer: Substrate specificity at the P-site
    • Monro, R.E., Cerna, J. and Marcker, K.A. (1968) Ribosome-catalyzed peptidyl transfer: substrate specificity at the P-site. Proc. Natl Acad. Sci. USA, 61, 1042-1049.
    • (1968) Proc. Natl. Acad. Sci. USA , vol.61 , pp. 1042-1049
    • Monro, R.E.1    Cerna, J.2    Marcker, K.A.3
  • 3
    • 0021094219 scopus 로고
    • Cooperative effects in the peptidyltransferase center of Escherichia coli ribosomes
    • Bourd, S.B., Kukhanova, M.K., Gottikh, B.P. and Krayevsky, A.A. (1983) Cooperative effects in the peptidyltransferase center of Escherichia coli ribosomes. Eur. J. Biochem., 135, 465-470.
    • (1983) Eur. J. Biochem. , vol.135 , pp. 465-470
    • Bourd, S.B.1    Kukhanova, M.K.2    Gottikh, B.P.3    Krayevsky, A.A.4
  • 4
    • 0021926739 scopus 로고
    • 2′(3′)-O-L-Phenylalanyl derivatives of N2,5′-anhydroformycin and N4,5′-anhydroformycin: New substrates for ribosomal peptidyltransferase with a fixed anti and syn conformation of the base
    • Bhuta, P. and Zemlicka, J. (1985) 2′(3′)-O-L-Phenylalanyl derivatives of N2,5′-anhydroformycin and N4,5′-anhydroformycin: new substrates for ribosomal peptidyltransferase with a fixed anti and syn conformation of the base. Biochim. Biophys. Acta, 841, 145-150.
    • (1985) Biochim. Biophys. Acta , vol.841 , pp. 145-150
    • Bhuta, P.1    Zemlicka, J.2
  • 5
    • 0025021925 scopus 로고
    • Effect of nucleotide substitution on the peptidyltransferase activity of 2′(3′)-O-(aminoacyl) oligonucleotides
    • Tezuka, M. and Chladek, S. (1990) Effect of nucleotide substitution on the peptidyltransferase activity of 2′(3′)-O-(aminoacyl) oligonucleotides. Biochemistry, 29, 667-670.
    • (1990) Biochemistry , vol.29 , pp. 667-670
    • Tezuka, M.1    Chladek, S.2
  • 6
    • 0019876111 scopus 로고
    • Donor site of ribosomal peptidyltransferase: Investigation of substrate specificity using 2′(3′)-O-(N-acylaminoacyl dinucleoside phosphates as models of the 3′ terminus of N-acylaminoacyl transfer ribonucleic acid
    • Quiggle, K., Kumar, G., Ott, T.W., Ryu, E.K. and Chladek, S. (1981) Donor site of ribosomal peptidyltransferase: investigation of substrate specificity using 2′(3′)-O-(N-acylaminoacyl dinucleoside phosphates as models of the 3′ terminus of N-acylaminoacyl transfer ribonucleic acid. Biochemistry, 20, 3480-3485.
    • (1981) Biochemistry , vol.20 , pp. 3480-3485
    • Quiggle, K.1    Kumar, G.2    Ott, T.W.3    Ryu, E.K.4    Chladek, S.5
  • 7
    • 0019319609 scopus 로고
    • The role of the cytidine residues of the tRNA 3′-terminus at the peptidyltransferase A- and P-sites
    • Quiggle, K. and Chladek, S. (1980) The role of the cytidine residues of the tRNA 3′-terminus at the peptidyltransferase A- and P-sites. FEBS Lett., 118, 172-175.
    • (1980) FEBS Lett. , vol.118 , pp. 172-175
    • Quiggle, K.1    Chladek, S.2
  • 8
    • 0016763961 scopus 로고
    • Effect of cytidine-5′-monophosphate on peptidyl transferase activity
    • Cerna, J. (1975) Effect of cytidine-5′-monophosphate on peptidyl transferase activity. FEBS Lett., 58, 94-98.
    • (1975) FEBS Lett. , vol.58 , pp. 94-98
    • Cerna, J.1
  • 9
    • 0029085929 scopus 로고
    • A base pair between tRNA and 23S rRNA in the peptidyl transferase centre of the ribosome
    • Samaha, R.R., Green, R. and Noller, H.F. (1995) A base pair between tRNA and 23S rRNA in the peptidyl transferase centre of the ribosome. Nature, 377, 309-314.
    • (1995) Nature , vol.377 , pp. 309-314
    • Samaha, R.R.1    Green, R.2    Noller, H.F.3
  • 10
    • 0033231562 scopus 로고    scopus 로고
    • Base-pairing between 23S rRNA and tRNA in the ribosomal A site
    • Kim, D.F. and Green, R. (1999) Base-pairing between 23S rRNA and tRNA in the ribosomal A site. Mol. Cell, 4, 859-864.
    • (1999) Mol. Cell , vol.4 , pp. 859-864
    • Kim, D.F.1    Green, R.2
  • 11
    • 0034637161 scopus 로고    scopus 로고
    • The structural basis of ribosome activity in peptide bond synthesis
    • Nissen, P., Hansen, J., Ban, N., Moore, P.B. and Steitz, T.A. (2000) The structural basis of ribosome activity in peptide bond synthesis. Science, 289, 920-930.
    • (2000) Science , vol.289 , pp. 920-930
    • Nissen, P.1    Hansen, J.2    Ban, N.3    Moore, P.B.4    Steitz, T.A.5
  • 13
    • 0015730126 scopus 로고
    • 2′ (3′)-O-N-(Formylmethionyl)-adenosine-5′-phosphate, a new donor substrate in peptidyl transferase catalyzed reactions
    • Cerna, J., Rychlik, I., Krayevsky, A.A. and Gottikh, B.P. (1973) 2′ (3′)-O-N-(Formylmethionyl -adenosine-5′-phosphate, a new donor substrate in peptidyl transferase catalyzed reactions. FEBS Lett., 37, 188-191.
    • (1973) FEBS Lett. , vol.37 , pp. 188-191
    • Cerna, J.1    Rychlik, I.2    Krayevsky, A.A.3    Gottikh, B.P.4
  • 14
    • 0014674829 scopus 로고
    • Substrate specificity of ribosomal peptidyl transferase: 2′(3′)-O-aminoacyl nucleosides as acceptors of the peptide chain on the amino acid site
    • Rychlik, I., Cerna, J., Chladek, S., Zemlicka, J. and Haladova, Z. (1969) Substrate specificity of ribosomal peptidyl transferase: 2′(3′)-O-aminoacyl nucleosides as acceptors of the peptide chain on the amino acid site. J. Mol. Biol., 43, 13-24.
    • (1969) J. Mol. Biol. , vol.43 , pp. 13-24
    • Rychlik, I.1    Cerna, J.2    Chladek, S.3    Zemlicka, J.4    Haladova, Z.5
  • 15
    • 0024239966 scopus 로고
    • Parameters for the preparation of Escherichia coli ribosomes and ribosomal subunits active in tRNA binding
    • Rheinberger, H.J., Geigenmuller, U., Wedde, M. and Nierhaus, K.H. (1988) Parameters for the preparation of Escherichia coli ribosomes and ribosomal subunits active in tRNA binding. Methods Enzymol., 164, 658-670.
    • (1988) Methods Enzymol. , vol.164 , pp. 658-670
    • Rheinberger, H.J.1    Geigenmuller, U.2    Wedde, M.3    Nierhaus, K.H.4
  • 16
    • 0024334898 scopus 로고
    • Interaction of tRNA with 23S rRNA in the ribosomal A, P and E sites
    • Moazed, D. and Noller, H.F. (1989) Interaction of tRNA with 23S rRNA in the ribosomal A, P and E sites. Cell, 57, 585-597.
    • (1989) Cell , vol.57 , pp. 585-597
    • Moazed, D.1    Noller, H.F.2
  • 17
    • 0000932115 scopus 로고
    • A general and efficient route for chemical aminoacylation of transfer RNAs
    • Robertson, S.A., Ellman, J.A. and Schultz, P.G. (1991) A general and efficient route for chemical aminoacylation of transfer RNAs. J. Am. Chem, Soc., 113, 2722-2729.
    • (1991) J. Am. Chem. Soc. , vol.113 , pp. 2722-2729
    • Robertson, S.A.1    Ellman, J.A.2    Schultz, P.G.3
  • 18
    • 0031696584 scopus 로고    scopus 로고
    • Metal ion probing of rRNAs: Evidence for evolutionarily conserved divalent cation binding pockets
    • Polacek, N. and Barta, A. (1998) Metal ion probing of rRNAs: evidence for evolutionarily conserved divalent cation binding pockets. RNA, 4, 1282-1294.
    • (1998) RNA , vol.4 , pp. 1282-1294
    • Polacek, N.1    Barta, A.2
  • 19
    • 12644257881 scopus 로고    scopus 로고
    • Conserved nucleotides of 23 S rRNA located at the ribosomal peptidyltransferase center
    • Spahn, C.M., Schafer, M.A., Krayevsky, A.A. and Nierhaus, K.H. (1996) Conserved nucleotides of 23 S rRNA located at the ribosomal peptidyltransferase center. J. Biol. Chem., 271, 32857-32862.
    • (1996) J. Biol. Chem. , vol.271 , pp. 32857-32862
    • Spahn, C.M.1    Schafer, M.A.2    Krayevsky, A.A.3    Nierhaus, K.H.4
  • 20
    • 0034712097 scopus 로고    scopus 로고
    • General acid-base catalysis in the mechanism of a hepatitis delta virus ribozyme
    • Nakano, S., Chadalavada, D.M. and Bevilacqua, P.C. (2000) General acid-base catalysis in the mechanism of a hepatitis delta virus ribozyme. Science, 287, 1493-1497.
    • (2000) Science , vol.287 , pp. 1493-1497
    • Nakano, S.1    Chadalavada, D.M.2    Bevilacqua, P.C.3
  • 21
    • 0033215448 scopus 로고    scopus 로고
    • Imidazole rescue of a cytosine mutation in a self-cleaving ribozyme
    • Perrotta, A.T., Shih, I. and Been, M.D. (1999) Imidazole rescue of a cytosine mutation in a self-cleaving ribozyme. Science, 286, 123-126.
    • (1999) Science , vol.286 , pp. 123-126
    • Perrotta, A.T.1    Shih, I.2    Been, M.D.3
  • 22
    • 0035852640 scopus 로고    scopus 로고
    • Involvement of a cytosine side chain in proton transfer in the rate-determining step of ribozyme self-cleavage
    • Shih, I.H. and Been, M.D. (2001) Involvement of a cytosine side chain in proton transfer in the rate-determining step of ribozyme self-cleavage. Proc. Natl Acad. Sci. USA, 98, 1489-1494.
    • (2001) Proc. Natl. Acad. Sci. USA , vol.98 , pp. 1489-1494
    • Shih, I.H.1    Been, M.D.2
  • 23
    • 0020069555 scopus 로고
    • Activity of the 2′ and 3′ isomers of aminoacyl transfer ribonucleic acid in the in vitro peptide elongation on E. coli ribosomes
    • Wagner, T., Cramer, F. and Sprinzl, M. (1982) Activity of the 2′ and 3′ isomers of aminoacyl transfer ribonucleic acid in the in vitro peptide elongation on E. coli ribosomes. Biochemistry, 21, 1521-1529. 24 Dorner, S., Polacek, N., Schulmeister, U., Panuschka, C. and Barta, A. (2002) Molecular aspects of the ribosomal peptidyl transferase. Biochem. Soc. Trans., 30, 1131-1136.
    • (1982) Biochemistry , vol.21 , pp. 1521-1529
    • Wagner, T.1    Cramer, F.2    Sprinzl, M.3
  • 25
    • 0033592361 scopus 로고    scopus 로고
    • A possible mechanism of peptide bond formation on ribosome without mediation of peptidyl transferase
    • Das, G.K., Bhattacharyya, D. and Burma, D.P. (1999) A possible mechanism of peptide bond formation on ribosome without mediation of peptidyl transferase. J. Theor. Biol., 200, 193-205.
    • (1999) J. Theor. Biol. , vol.200 , pp. 193-205
    • Das, G.K.1    Bhattacharyya, D.2    Burma, D.P.3
  • 26
    • 0037069377 scopus 로고    scopus 로고
    • Catalysis of amide synthesis by RNA phosphodiester and hydroxyl groups
    • Chamberlin, S.I., Merino, E.J. and Weeks, K.M. (2002) Catalysis of amide synthesis by RNA phosphodiester and hydroxyl groups. Proc. Natl Acad. Sci. USA, 99, 14688-14693.
    • (2002) Proc. Natl. Acad. Sci. USA , vol.99 , pp. 14688-14693
    • Chamberlin, S.I.1    Merino, E.J.2    Weeks, K.M.3
  • 27
    • 0002767508 scopus 로고    scopus 로고
    • Green, R. and Schroeder, R. (eds), R.G. Landes Company, Chapman & Hall, New York
    • Barta, A. and Halama, I. (1996) In Green, R. and Schroeder, R. (eds), Ribosomal RNA and Group I Introns. R.G. Landes Company, Chapman & Hall, New York, pp. 35-54.
    • (1996) Ribosomal RNA and Group I Introns , pp. 35-54
    • Barta, A.1    Halama, I.2
  • 28
    • 0036671344 scopus 로고    scopus 로고
    • Important contribution to catalysis of peptide bond formation by a single ionizing group within the ribosome
    • Katunin, V.I., Muth, G.W., Strobel, S.A., Wintermeyer, W. and Rodnina, M.V. (2002) Important contribution to catalysis of peptide bond formation by a single ionizing group within the ribosome. Mol. Cell, 10, 339-346.
    • (2002) Mol. Cell , vol.10 , pp. 339-346
    • Katunin, V.I.1    Muth, G.W.2    Strobel, S.A.3    Wintermeyer, W.4    Rodnina, M.V.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.