-
1
-
-
33846184186
-
Overexpressing GLT1 in gpd1 mutant to improve the production of ethanol of Saccharomyces cerevisiae
-
10.1007/s00253-006-0610-4, 17021874
-
Kong QX, Cao LM, Zhang AL, Chen X. Overexpressing GLT1 in gpd1 mutant to improve the production of ethanol of Saccharomyces cerevisiae. Appl Microbiol Biotechnol 2007, 73:1382-1386. 10.1007/s00253-006-0610-4, 17021874.
-
(2007)
Appl Microbiol Biotechnol
, vol.73
, pp. 1382-1386
-
-
Kong, Q.X.1
Cao, L.M.2
Zhang, A.L.3
Chen, X.4
-
2
-
-
33845286497
-
Improved production of ethanol by deleting FPS1 and over-expressing GLT1 in Saccharomyces cerevisiae
-
10.1007/s10529-006-9185-5, 17043906
-
Kong QX, Gu JG, Cao LM, Zhang AL, Chen X, Zhao XM. Improved production of ethanol by deleting FPS1 and over-expressing GLT1 in Saccharomyces cerevisiae. Biotechnol Lett 2006, 28:2033-2038. 10.1007/s10529-006-9185-5, 17043906.
-
(2006)
Biotechnol Lett
, vol.28
, pp. 2033-2038
-
-
Kong, Q.X.1
Gu, J.G.2
Cao, L.M.3
Zhang, A.L.4
Chen, X.5
Zhao, X.M.6
-
3
-
-
0031770286
-
Improved ethanol production by glycerol-3-phosphate dehydrogenase mutants of Saccharomyces cerevisiae
-
10.1007/s002530051317, 9830094
-
Valadi H, Larsson C, Gustafsson L. Improved ethanol production by glycerol-3-phosphate dehydrogenase mutants of Saccharomyces cerevisiae. Appl Microbiol Biotechnol 1998, 50:434-439. 10.1007/s002530051317, 9830094.
-
(1998)
Appl Microbiol Biotechnol
, vol.50
, pp. 434-439
-
-
Valadi, H.1
Larsson, C.2
Gustafsson, L.3
-
4
-
-
70449704649
-
High-level production of ethanol during fed-batch ethanol fermentation with a controlled aeration rate and non-sterile glucose powder feeding of Saccharomyces cerevisiae
-
Seo HB, Kim SS, Lee HY, Jung KH. High-level production of ethanol during fed-batch ethanol fermentation with a controlled aeration rate and non-sterile glucose powder feeding of Saccharomyces cerevisiae. Biotechnol Biop Eng 2009, 14:591-598.
-
(2009)
Biotechnol Biop Eng
, vol.14
, pp. 591-598
-
-
Seo, H.B.1
Kim, S.S.2
Lee, H.Y.3
Jung, K.H.4
-
5
-
-
66249090878
-
Engineering 2, 3-butanediol dehydrogenase to reduce acetoin formation by glycerol overproducing low-alcohol wine yeast
-
10.1128/AEM.02157-08, 2681661, 19329666
-
Ehsani M, Fernandez MR, Biosca JA, Julien A, Dequin S. Engineering 2, 3-butanediol dehydrogenase to reduce acetoin formation by glycerol overproducing low-alcohol wine yeast. Appl Environ Microbiol 2009, 75:3196-3205. 10.1128/AEM.02157-08, 2681661, 19329666.
-
(2009)
Appl Environ Microbiol
, vol.75
, pp. 3196-3205
-
-
Ehsani, M.1
Fernandez, M.R.2
Biosca, J.A.3
Julien, A.4
Dequin, S.5
-
6
-
-
33947191174
-
Towards industrial pentose-fermenting yeast strains
-
10.1007/s00253-006-0827-2, 17294186
-
Hahn-Hägerdal B, Karhumaa K, Fonseca C, Spencer-Martins I, Gorwa-Grauslund MF. Towards industrial pentose-fermenting yeast strains. Appl Microbiol Biotechnol 2007, 74:937-953. 10.1007/s00253-006-0827-2, 17294186.
-
(2007)
Appl Microbiol Biotechnol
, vol.74
, pp. 937-953
-
-
Hahn-Hägerdal, B.1
Karhumaa, K.2
Fonseca, C.3
Spencer-Martins, I.4
Gorwa-Grauslund, M.F.5
-
7
-
-
51949107835
-
Progress in metabolic engineering of Saccharomyces cerevisiae
-
10.1128/MMBR.00025-07, 2546860, 18772282
-
Nevoigt E. Progress in metabolic engineering of Saccharomyces cerevisiae. Microbiol Mol Biol Rev 2008, 72:379-412. 10.1128/MMBR.00025-07, 2546860, 18772282.
-
(2008)
Microbiol Mol Biol Rev
, vol.72
, pp. 379-412
-
-
Nevoigt, E.1
-
8
-
-
68349109625
-
Ethanol production from xylose in engineered Saccharomyces cerevisiae strains: current state and perspectives
-
10.1007/s00253-009-2101-x, 19572128
-
Matsushika A, Inoue H, Kodaki T, Sawayama S. Ethanol production from xylose in engineered Saccharomyces cerevisiae strains: current state and perspectives. Appl Microbiol Biotechnol 2009, 84:37-53. 10.1007/s00253-009-2101-x, 19572128.
-
(2009)
Appl Microbiol Biotechnol
, vol.84
, pp. 37-53
-
-
Matsushika, A.1
Inoue, H.2
Kodaki, T.3
Sawayama, S.4
-
9
-
-
0025405421
-
Simple constrained optimization view of acetate overflow in E. coli
-
10.1002/bit.260350711, 18592570
-
Ra M, Mm D. Simple constrained optimization view of acetate overflow in E. coli. Biotechnol Bioeng 1990, 35:732-738. 10.1002/bit.260350711, 18592570.
-
(1990)
Biotechnol Bioeng
, vol.35
, pp. 732-738
-
-
Ra, M.1
Mm, D.2
-
10
-
-
0035017810
-
Flux-balance analysis of mitochondrial energy metabolism: consequences of systemic stoichiometric constraints
-
Ramakrishna R, Edwards JS, McCulloch A, Palsson BO. Flux-balance analysis of mitochondrial energy metabolism: consequences of systemic stoichiometric constraints. Am J Physiol 2001, 280:695-704.
-
(2001)
Am J Physiol
, vol.280
, pp. 695-704
-
-
Ramakrishna, R.1
Edwards, J.S.2
McCulloch, A.3
Palsson, B.O.4
-
11
-
-
0142122303
-
Advances in flux balance analysis
-
10.1016/j.copbio.2003.08.001, 14580578
-
Kauffman KJ, Prakash P, Edwards JS. Advances in flux balance analysis. Curr Opin Biotechnol 2003, 14:491-496. 10.1016/j.copbio.2003.08.001, 14580578.
-
(2003)
Curr Opin Biotechnol
, vol.14
, pp. 491-496
-
-
Kauffman, K.J.1
Prakash, P.2
Edwards, J.S.3
-
12
-
-
0034625143
-
The Escherichia coli MG1655 in silico metabolic genotype: its definition, characteristics, and capabilities
-
10.1073/pnas.97.10.5528, 25862, 10805808
-
Edwards JS, Palsson BO. The Escherichia coli MG1655 in silico metabolic genotype: its definition, characteristics, and capabilities. Proc Natl Acad Sci USA 2000, 97:5528-5533. 10.1073/pnas.97.10.5528, 25862, 10805808.
-
(2000)
Proc Natl Acad Sci USA
, vol.97
, pp. 5528-5533
-
-
Edwards, J.S.1
Palsson, B.O.2
-
13
-
-
0037385718
-
Genome-scale microbial in silico models: the constraints-based approach
-
10.1016/S0167-7799(03)00030-1, 12679064
-
Price ND, Papin JA, Schilling CH, Palsson BO. Genome-scale microbial in silico models: the constraints-based approach. Trends Biotechnol 2003, 21:162-169. 10.1016/S0167-7799(03)00030-1, 12679064.
-
(2003)
Trends Biotechnol
, vol.21
, pp. 162-169
-
-
Price, N.D.1
Papin, J.A.2
Schilling, C.H.3
Palsson, B.O.4
-
14
-
-
0037069467
-
Analysis of optimality in natural and perturbed metabolic networks
-
10.1073/pnas.232349399, 137552, 12415116
-
Segre D, Vitkup D, Church GM. Analysis of optimality in natural and perturbed metabolic networks. Proc Natl Acad Sci USA 2002, 99:15112-15117. 10.1073/pnas.232349399, 137552, 12415116.
-
(2002)
Proc Natl Acad Sci USA
, vol.99
, pp. 15112-15117
-
-
Segre, D.1
Vitkup, D.2
Church, G.M.3
-
15
-
-
36749102630
-
Coupling kinetic expressions and metabolic networks for predicting wine fermentations
-
10.1002/bit.21494, 17497743
-
Pizarro F, Varela C, Martabit C, Bruno C, Perez-Correa JR, Agosin E. Coupling kinetic expressions and metabolic networks for predicting wine fermentations. Biotechnol Bioeng 2007, 98:986-998. 10.1002/bit.21494, 17497743.
-
(2007)
Biotechnol Bioeng
, vol.98
, pp. 986-998
-
-
Pizarro, F.1
Varela, C.2
Martabit, C.3
Bruno, C.4
Perez-Correa, J.R.5
Agosin, E.6
-
16
-
-
33845292612
-
Parameter estimation in metabolic flux balance models for batch fermentation--Formulation & Solution using Differential Variational Inequalities (DVIs)
-
Raghunathan AU, Perez-Correa JR, Agosin E, Biegler LT. Parameter estimation in metabolic flux balance models for batch fermentation--Formulation & Solution using Differential Variational Inequalities (DVIs). Ann Op Res 2006, 148:251-270.
-
(2006)
Ann Op Res
, vol.148
, pp. 251-270
-
-
Raghunathan, A.U.1
Perez-Correa, J.R.2
Agosin, E.3
Biegler, L.T.4
-
17
-
-
67249106833
-
Development of systematic and combinatorial approaches for the metabolic engineering of microorganisms
-
MIT, Metabolic engineering department
-
Alper HHS. Development of systematic and combinatorial approaches for the metabolic engineering of microorganisms. PhD Thesis 2006, MIT, Metabolic engineering department.
-
(2006)
PhD Thesis
-
-
Alper, H.H.S.1
-
18
-
-
0037313750
-
Genome-scale reconstruction of the Saccharomyces cerevisiae metabolic network
-
10.1101/gr.234503, 420374, 12566402
-
Forster J, Famili I, Fu P, Palsson BO, Nielsen J. Genome-scale reconstruction of the Saccharomyces cerevisiae metabolic network. Genome Res 2003, 13:244-253. 10.1101/gr.234503, 420374, 12566402.
-
(2003)
Genome Res
, vol.13
, pp. 244-253
-
-
Forster, J.1
Famili, I.2
Fu, P.3
Palsson, B.O.4
Nielsen, J.5
-
19
-
-
3843128481
-
Reconstruction and Validation of Saccharomyces cerevisiae iND750, a Fully Compartmentalized Genome-Scale Metabolic Model
-
10.1101/gr.2250904, 442145, 15197165
-
Duarte NC, Herrgård MJ, Palsson B. Reconstruction and Validation of Saccharomyces cerevisiae iND750, a Fully Compartmentalized Genome-Scale Metabolic Model. Genome Res 2004, 14:1298-1309. 10.1101/gr.2250904, 442145, 15197165.
-
(2004)
Genome Res
, vol.14
, pp. 1298-1309
-
-
Duarte, N.C.1
Herrgård, M.J.2
Palsson, B.3
-
20
-
-
8744224466
-
OptStrain: a computational framework for redesign of microbial production systems
-
10.1101/gr.2872004, 525696, 15520298
-
Pharkya P, Burgard AP, Maranas CD. OptStrain: a computational framework for redesign of microbial production systems. Genome Res 2004, 14:2367-2376. 10.1101/gr.2872004, 525696, 15520298.
-
(2004)
Genome Res
, vol.14
, pp. 2367-2376
-
-
Pharkya, P.1
Burgard, A.P.2
Maranas, C.D.3
-
21
-
-
77954590959
-
OptForce: An Optimization Procedure for Identifying All Genetic Manipulations Leading to Targeted
-
Ranganathan S, Suthers PF, Maranas CD. OptForce: An Optimization Procedure for Identifying All Genetic Manipulations Leading to Targeted. PLoS Comp Biol 2010, 6:1-11.
-
(2010)
PLoS Comp Biol
, vol.6
, pp. 1-11
-
-
Ranganathan, S.1
Suthers, P.F.2
Maranas, C.D.3
-
22
-
-
33644832381
-
In silico aided metabolic engineering of Saccharomyces cerevisiae for improved bioethanol production
-
10.1016/j.ymben.2005.09.007, 16289778
-
Bro C, Regenberg B, Förster J, Nielsen J. In silico aided metabolic engineering of Saccharomyces cerevisiae for improved bioethanol production. Metab Eng 2006, 8:102-111. 10.1016/j.ymben.2005.09.007, 16289778.
-
(2006)
Metab Eng
, vol.8
, pp. 102-111
-
-
Bro, C.1
Regenberg, B.2
Förster, J.3
Nielsen, J.4
-
23
-
-
18844392599
-
Identifying gene targets for the metabolic engineering of lycopene biosynthesis in Escherichia coli
-
10.1016/j.ymben.2004.12.003, 15885614
-
Alper H, Jin YS, Moxley JF, Stephanopoulos G. Identifying gene targets for the metabolic engineering of lycopene biosynthesis in Escherichia coli. Metab Eng 2005, 7:155-164. 10.1016/j.ymben.2004.12.003, 15885614.
-
(2005)
Metab Eng
, vol.7
, pp. 155-164
-
-
Alper, H.1
Jin, Y.S.2
Moxley, J.F.3
Stephanopoulos, G.4
-
24
-
-
25144505718
-
In silico design and adaptive evolution of Escherichia coli for production of lactic acid
-
10.1002/bit.20542, 15962337
-
Fong SS, Burgard AP, Herring CD, Knight EM, Blattner FR, Maranas CD, Palsson BO. In silico design and adaptive evolution of Escherichia coli for production of lactic acid. Biotechnol Bioeng 2005, 91:643-648. 10.1002/bit.20542, 15962337.
-
(2005)
Biotechnol Bioeng
, vol.91
, pp. 643-648
-
-
Fong, S.S.1
Burgard, A.P.2
Herring, C.D.3
Knight, E.M.4
Blattner, F.R.5
Maranas, C.D.6
Palsson, B.O.7
-
25
-
-
33751545659
-
Genome-scale in silico aided metabolic analysis and flux comparisons of Escherichia coli to improve succinate production
-
10.1007/s00253-006-0535-y, 16927085
-
Wang Q, Chen X, Yang Y, Zhao X. Genome-scale in silico aided metabolic analysis and flux comparisons of Escherichia coli to improve succinate production. Appl Microbiol Biotechnol 2006, 73:887-894. 10.1007/s00253-006-0535-y, 16927085.
-
(2006)
Appl Microbiol Biotechnol
, vol.73
, pp. 887-894
-
-
Wang, Q.1
Chen, X.2
Yang, Y.3
Zhao, X.4
-
26
-
-
0242487787
-
Optknock: a bilevel programming framework for identifying gene knockout strategies for microbial strain optimization
-
10.1002/bit.10803, 14595777
-
Burgard AP, Pharkya P, Maranas CD. Optknock: a bilevel programming framework for identifying gene knockout strategies for microbial strain optimization. Biotechnol Bioeng 2003, 84:647-657. 10.1002/bit.10803, 14595777.
-
(2003)
Biotechnol Bioeng
, vol.84
, pp. 647-657
-
-
Burgard, A.P.1
Pharkya, P.2
Maranas, C.D.3
-
27
-
-
34249934691
-
Metabolic engineering of Escherichia coli for the production of L-valine based on transcriptome analysis and in silico gene knockout simulation
-
10.1073/pnas.0702609104, 1857225, 17463081
-
Park JH, Lee KH, Kim TY, Lee SY. Metabolic engineering of Escherichia coli for the production of L-valine based on transcriptome analysis and in silico gene knockout simulation. Proc Natl Acad Sci USA 2007, 104:7797-7802. 10.1073/pnas.0702609104, 1857225, 17463081.
-
(2007)
Proc Natl Acad Sci USA
, vol.104
, pp. 7797-7802
-
-
Park, J.H.1
Lee, K.H.2
Kim, T.Y.3
Lee, S.Y.4
-
28
-
-
36849002434
-
Systems metabolic engineering of Escherichia coli for L-threonine production
-
Lee KH, Park JH, Kim TY, Kim HU, Lee SY. Systems metabolic engineering of Escherichia coli for L-threonine production. Mol Syst Biol 2007, 3:1744-4292.
-
(2007)
Mol Syst Biol
, vol.3
, pp. 1744-4292
-
-
Lee, K.H.1
Park, J.H.2
Kim, T.Y.3
Kim, H.U.4
Lee, S.Y.5
-
29
-
-
34447308322
-
Genome-scale analysis of Saccharomyces cerevisiae metabolism and ethanol production in fed-batch culture
-
10.1002/bit.21332, 17243146
-
Hjersted JL, Henson MA, Mahadevan R. Genome-scale analysis of Saccharomyces cerevisiae metabolism and ethanol production in fed-batch culture. Biotechnol Bioeng 2007, 97:1190-1204. 10.1002/bit.21332, 17243146.
-
(2007)
Biotechnol Bioeng
, vol.97
, pp. 1190-1204
-
-
Hjersted, J.L.1
Henson, M.A.2
Mahadevan, R.3
-
30
-
-
66249096326
-
Steady-state and dynamic flux balance analysis of ethanol production by Saccharomyces cerevisiae
-
10.1049/iet-syb.2008.0103, 19449977
-
Hjersted JL, Henson MA. Steady-state and dynamic flux balance analysis of ethanol production by Saccharomyces cerevisiae. IET Systems Biology 2009, 3:167-179. 10.1049/iet-syb.2008.0103, 19449977.
-
(2009)
IET Systems Biology
, vol.3
, pp. 167-179
-
-
Hjersted, J.L.1
Henson, M.A.2
-
31
-
-
52649136124
-
Integration of metabolic modeling and phenotypic data in evaluation and improvement of ethanol production using respiration-deficient mutants of Saccharomyces cerevisiae
-
10.1128/AEM.00009-08, 2547027, 18586960
-
Dikicioglu D, Pir P, Onsan ZI, Ulgen KO, Kirdar B, Oliver SG. Integration of metabolic modeling and phenotypic data in evaluation and improvement of ethanol production using respiration-deficient mutants of Saccharomyces cerevisiae. Appl Environ Microbiol 2008, 74:5809-5816. 10.1128/AEM.00009-08, 2547027, 18586960.
-
(2008)
Appl Environ Microbiol
, vol.74
, pp. 5809-5816
-
-
Dikicioglu, D.1
Pir, P.2
Onsan, Z.I.3
Ulgen, K.O.4
Kirdar, B.5
Oliver, S.G.6
-
32
-
-
1842713088
-
The Biotechnology of Wine Yeast
-
Bisson LF. The Biotechnology of Wine Yeast. Food Biotechnol 2004, 18:63-96.
-
(2004)
Food Biotechnol
, vol.18
, pp. 63-96
-
-
Bisson, L.F.1
-
33
-
-
0034659738
-
Tailoring wine yeast for the new millennium: novel approaches to the ancient art of winemaking
-
10.1002/1097-0061(20000615)16:8<675::AID-YEA585>3.0.CO;2-B, 10861899
-
Pretorius IS. Tailoring wine yeast for the new millennium: novel approaches to the ancient art of winemaking. Yeast 2000, 16:675-729. 10.1002/1097-0061(20000615)16:8<675::AID-YEA585>3.0.CO;2-B, 10861899.
-
(2000)
Yeast
, vol.16
, pp. 675-729
-
-
Pretorius, I.S.1
-
34
-
-
36949025723
-
A systems biology perspective of wine fermentations
-
10.1002/yea.1545, 17899563
-
Pizarro F, Vargas FA, Agosin E. A systems biology perspective of wine fermentations. Yeast 2007, 24:977-991. 10.1002/yea.1545, 17899563.
-
(2007)
Yeast
, vol.24
, pp. 977-991
-
-
Pizarro, F.1
Vargas, F.A.2
Agosin, E.3
-
35
-
-
29544436058
-
An optimization framework for identifying reaction activation/inhibition or elimination candidates for overproduction in microbial systems
-
10.1016/j.ymben.2005.08.003, 16199194
-
Pharkya P, Maranas CD. An optimization framework for identifying reaction activation/inhibition or elimination candidates for overproduction in microbial systems. Metab Eng 2006, 8:1-13. 10.1016/j.ymben.2005.08.003, 16199194.
-
(2006)
Metab Eng
, vol.8
, pp. 1-13
-
-
Pharkya, P.1
Maranas, C.D.2
-
36
-
-
30044437327
-
Evolutionary programming as a platform for in silico metabolic engineering
-
10.1186/1471-2105-6-308, 1327682, 16375763
-
Patil KR, Rocha I, Förster J, Nielsen J. Evolutionary programming as a platform for in silico metabolic engineering. BMC Bioinformatics 2005, 6:308-320. 10.1186/1471-2105-6-308, 1327682, 16375763.
-
(2005)
BMC Bioinformatics
, vol.6
, pp. 308-320
-
-
Patil, K.R.1
Rocha, I.2
Förster, J.3
Nielsen, J.4
-
38
-
-
65649126379
-
Connecting extracellular metabolomic measurements to intracellular flux states in yeast
-
Mo ML, Palsson B, Herrgård MJ. Connecting extracellular metabolomic measurements to intracellular flux states in yeast. BMC Sys Biol 2009, 3:37-54.
-
(2009)
BMC Sys Biol
, vol.3
, pp. 37-54
-
-
Mo, M.L.1
Palsson, B.2
Herrgård, M.J.3
-
39
-
-
52649105455
-
The genome-scale metabolic model iIN 800 of Saccharomyces cerevisiae and its validation: a scaffold to query lipid metabolism
-
Nookaew I, Jewett MC, Meechai A, Thammarongtham C, Laoteng K, Cheevadhanarak S, Nielsen J, Bhumiratana S. The genome-scale metabolic model iIN 800 of Saccharomyces cerevisiae and its validation: a scaffold to query lipid metabolism. BMC Sys Biol 2008, 2:71.
-
(2008)
BMC Sys Biol
, vol.2
, pp. 71
-
-
Nookaew, I.1
Jewett, M.C.2
Meechai, A.3
Thammarongtham, C.4
Laoteng, K.5
Cheevadhanarak, S.6
Nielsen, J.7
Bhumiratana, S.8
-
40
-
-
25844463806
-
Metabolic functions of duplicate genes in Saccharomyces cerevisiae
-
10.1101/gr.3992505, 1240085, 16204195
-
Kuepfer L, Sauer U, Blank LM. Metabolic functions of duplicate genes in Saccharomyces cerevisiae. Genome Res 2005, 15:1421-1430. 10.1101/gr.3992505, 1240085, 16204195.
-
(2005)
Genome Res
, vol.15
, pp. 1421-1430
-
-
Kuepfer, L.1
Sauer, U.2
Blank, L.M.3
-
41
-
-
77958597036
-
Further developments towards a genome-scale metabolic model of yeast
-
10.1186/1752-0509-4-145, 2988745, 21029416
-
Dobson PD, Smallbone K, Jameson D, Simeonidis E, Lanthaler K, Pir P, Lu C, Swainston N, Dunn WB, Fisher P. Further developments towards a genome-scale metabolic model of yeast. BMC Systems Biology 2010, 4:145-151. 10.1186/1752-0509-4-145, 2988745, 21029416.
-
(2010)
BMC Systems Biology
, vol.4
, pp. 145-151
-
-
Dobson, P.D.1
Smallbone, K.2
Jameson, D.3
Simeonidis, E.4
Lanthaler, K.5
Pir, P.6
Lu, C.7
Swainston, N.8
Dunn, W.B.9
Fisher, P.10
-
42
-
-
0028146781
-
Stoichiometric flux balance models quantitatively predict growth and metabolic by-product secretion in wild-type Escherichia coli W3110
-
201879, 7986045
-
Varma A, Palsson BO. Stoichiometric flux balance models quantitatively predict growth and metabolic by-product secretion in wild-type Escherichia coli W3110. Appl Environ Microbiol 1994, 60:3724-3731. 201879, 7986045.
-
(1994)
Appl Environ Microbiol
, vol.60
, pp. 3724-3731
-
-
Varma, A.1
Palsson, B.O.2
-
43
-
-
0036708443
-
Dynamic flux balance analysis of diauxic growth in Escherichia coli
-
10.1016/S0006-3495(02)73903-9, 1302231, 12202358
-
Mahadevan R, Edwards JS, Doyle Iii FJ. Dynamic flux balance analysis of diauxic growth in Escherichia coli. Biophys J 2002, 83:1331-1340. 10.1016/S0006-3495(02)73903-9, 1302231, 12202358.
-
(2002)
Biophys J
, vol.83
, pp. 1331-1340
-
-
Mahadevan, R.1
Edwards, J.S.2
Doyle Iii, F.J.3
-
44
-
-
50249115104
-
Dynamic metabolic engineering for increasing bioprocess productivity
-
10.1016/j.ymben.2008.06.004, 18606241
-
Anesiadis N, Cluett WR, Mahadevan R. Dynamic metabolic engineering for increasing bioprocess productivity. Metab Eng 2008, 10:255-266. 10.1016/j.ymben.2008.06.004, 18606241.
-
(2008)
Metab Eng
, vol.10
, pp. 255-266
-
-
Anesiadis, N.1
Cluett, W.R.2
Mahadevan, R.3
-
45
-
-
77957828847
-
Dynamic Metabolic Flux Analysis Demonstrated on Cultures Where the Limiting Substrate Is Changed from Carbon to Nitrogen and Vice Versa
-
Gaspard L, Joeri B, Jo M, Ellen VH, Wim S, Erick V, Peter A. Dynamic Metabolic Flux Analysis Demonstrated on Cultures Where the Limiting Substrate Is Changed from Carbon to Nitrogen and Vice Versa. J Biomed Biotechnol 2010, 2010:19.
-
(2010)
J Biomed Biotechnol
, vol.2010
, pp. 19
-
-
Gaspard, L.1
Joeri, B.2
Jo, M.3
Ellen, V.H.4
Wim, S.5
Erick, V.6
Peter, A.7
-
46
-
-
44949247269
-
Dynamic analysis of integrated signaling, metabolic, and regulatory networks
-
10.1371/journal.pcbi.1000086, 2377155, 18483615
-
Lee JM, Gianchandani EP, Eddy JA, Papin JA. Dynamic analysis of integrated signaling, metabolic, and regulatory networks. PLoS Comput Biol 2008, 4:e1000086. 10.1371/journal.pcbi.1000086, 2377155, 18483615.
-
(2008)
PLoS Comput Biol
, vol.4
-
-
Lee, J.M.1
Gianchandani, E.P.2
Eddy, J.A.3
Papin, J.A.4
-
47
-
-
0037473205
-
Modeling of yeast metabolism and process dynamics in batch fermentation
-
10.1002/bit.10535, 12557315
-
Sainz J, Pizarro F, Perez-Correa J, Agosin E. Modeling of yeast metabolism and process dynamics in batch fermentation. Biotechnol Bioeng 2003, 81:818-828. 10.1002/bit.10535, 12557315.
-
(2003)
Biotechnol Bioeng
, vol.81
, pp. 818-828
-
-
Sainz, J.1
Pizarro, F.2
Perez-Correa, J.3
Agosin, E.4
-
48
-
-
58849110784
-
Photosynthetic metabolism of C3 plants shows highly cooperative regulation under changing environments: A systems biological analysis
-
10.1073/pnas.0810731105, 2615022, 19129487
-
Luo R, Wei H, Ye L, Wang K, Chen F, Luo L, Liu L, Li Y, Crabbe MJC, Jin L. Photosynthetic metabolism of C3 plants shows highly cooperative regulation under changing environments: A systems biological analysis. Proc Natl Acad Sci USA 2009, 106:847-852. 10.1073/pnas.0810731105, 2615022, 19129487.
-
(2009)
Proc Natl Acad Sci USA
, vol.106
, pp. 847-852
-
-
Luo, R.1
Wei, H.2
Ye, L.3
Wang, K.4
Chen, F.5
Luo, L.6
Liu, L.7
Li, Y.8
Crabbe, M.J.C.9
Jin, L.10
-
49
-
-
33846067658
-
DFBA-LQR: An optimal control approach to flux balance analysis
-
Uygun K, Matthew HWT, Huang Y. DFBA-LQR: An optimal control approach to flux balance analysis. Ind Eng Chem Res 2006, 45:8554-8564.
-
(2006)
Ind Eng Chem Res
, vol.45
, pp. 8554-8564
-
-
Uygun, K.1
Matthew, H.W.T.2
Huang, Y.3
-
50
-
-
33845564237
-
Dynamic analysis of optimality in myocardial energy metabolism under normal and ischemic conditions
-
Luo RY, Liao S, Tao GY, Li YY, Zeng S, Li YX, Luo Q. Dynamic analysis of optimality in myocardial energy metabolism under normal and ischemic conditions. Mol Syst Biol 2006, 2:1-6.
-
(2006)
Mol Syst Biol
, vol.2
, pp. 1-6
-
-
Luo, R.Y.1
Liao, S.2
Tao, G.Y.3
Li, Y.Y.4
Zeng, S.5
Li, Y.X.6
Luo, Q.7
-
51
-
-
77954724818
-
Genome scale metabolic modeling of a clostridial co culture for consolidated bioprocessing
-
Salimi F, Zhuang K, Mahadevan R. Genome scale metabolic modeling of a clostridial co culture for consolidated bioprocessing. Biotechnologu 2010, 5:726-738.
-
(2010)
Biotechnologu
, vol.5
, pp. 726-738
-
-
Salimi, F.1
Zhuang, K.2
Mahadevan, R.3
-
52
-
-
78751584992
-
Genome- scale dynamic modeling of the competition between Rhodoferax and Geobacter in anoxic subsurface environments
-
Zhuang K, Izallalen M, Mouser P, Richter H, Risso C, Mahadevan R, Lovley DR. Genome- scale dynamic modeling of the competition between Rhodoferax and Geobacter in anoxic subsurface environments. The ISME Journal
-
The ISME Journal
-
-
Zhuang, K.1
Izallalen, M.2
Mouser, P.3
Richter, H.4
Risso, C.5
Mahadevan, R.6
Lovley, D.R.7
-
53
-
-
76749149000
-
Application of dynamic flux balance analysis to an industrial Escherichia coli fermentation
-
Meadows AL, Karnik R, Lam H, Forestell S, Snedecor B. Application of dynamic flux balance analysis to an industrial Escherichia coli fermentation. Metab Eng 2009, 12:150-160.
-
(2009)
Metab Eng
, vol.12
, pp. 150-160
-
-
Meadows, A.L.1
Karnik, R.2
Lam, H.3
Forestell, S.4
Snedecor, B.5
-
54
-
-
70449521460
-
A dynamic, genome-scale flux model of Lactococcus lactis to increase specific recombinant protein expression
-
10.1016/j.ymben.2009.07.007, 19666133
-
Oddone GM, Mills DA, Block DE. A dynamic, genome-scale flux model of Lactococcus lactis to increase specific recombinant protein expression. Metab Eng 2009, 11:367-381. 10.1016/j.ymben.2009.07.007, 19666133.
-
(2009)
Metab Eng
, vol.11
, pp. 367-381
-
-
Oddone, G.M.1
Mills, D.A.2
Block, D.E.3
-
55
-
-
0344824417
-
Saccharomyces cerevisiae Phenotypes Can Be Predicted by Using Constraint-Based Analysis of a Genome-Scale Reconstructed Metabolic Network
-
10.1073/pnas.2235812100, 263729, 14578455
-
Famili I, Forster J, Nielsen J, Palsson BO. Saccharomyces cerevisiae Phenotypes Can Be Predicted by Using Constraint-Based Analysis of a Genome-Scale Reconstructed Metabolic Network. Proc Natl Acad Sci USA 2003, 100:13134-13139. 10.1073/pnas.2235812100, 263729, 14578455.
-
(2003)
Proc Natl Acad Sci USA
, vol.100
, pp. 13134-13139
-
-
Famili, I.1
Forster, J.2
Nielsen, J.3
Palsson, B.O.4
-
56
-
-
0035125986
-
In silico predictions of Escherichia coli metabolic capabilities are consistent with experimental data
-
10.1038/84379, 11175725
-
Edwards JS, Ibarra RU, Palsson BO. In silico predictions of Escherichia coli metabolic capabilities are consistent with experimental data. Nat Biotechnol 2001, 19:125-130. 10.1038/84379, 11175725.
-
(2001)
Nat Biotechnol
, vol.19
, pp. 125-130
-
-
Edwards, J.S.1
Ibarra, R.U.2
Palsson, B.O.3
-
57
-
-
1642457253
-
The effects of alternate optimal solutions in constraint-based genome-scale metabolic models
-
10.1016/j.ymben.2003.09.002, 14642354
-
Mahadevan R, Schilling CH. The effects of alternate optimal solutions in constraint-based genome-scale metabolic models. Metab Eng 2003, 5:264-276. 10.1016/j.ymben.2003.09.002, 14642354.
-
(2003)
Metab Eng
, vol.5
, pp. 264-276
-
-
Mahadevan, R.1
Schilling, C.H.2
-
58
-
-
0032762991
-
Genome-Wide Transcriptional Analysis of Aerobic and Anaerobic Chemostat Cultures of Saccharomyces cerevisiae
-
94195, 10601195
-
ter Linde JJM, Liang H, Davis RW, Steensma HY, van Dijken JP, Pronk JT. Genome-Wide Transcriptional Analysis of Aerobic and Anaerobic Chemostat Cultures of Saccharomyces cerevisiae. J Bacteriol 1999, 181:7409-7413. 94195, 10601195.
-
(1999)
J Bacteriol
, vol.181
, pp. 7409-7413
-
-
ter Linde, J.J.M.1
Liang, H.2
Davis, R.W.3
Steensma, H.Y.4
van Dijken, J.P.5
Pronk, J.T.6
-
59
-
-
42149136764
-
New insights into the Saccharomyces cerevisiae fermentation switch: Dynamic transcriptional response to anaerobicity and glucose-excess
-
10.1186/1471-2164-9-100, 2292174, 18304306
-
van den Brink J, Daran-Lapujade P, Pronk JT, de Winde JH. New insights into the Saccharomyces cerevisiae fermentation switch: Dynamic transcriptional response to anaerobicity and glucose-excess. BMC Genomics 2008, 9:100. 10.1186/1471-2164-9-100, 2292174, 18304306.
-
(2008)
BMC Genomics
, vol.9
, pp. 100
-
-
van den Brink, J.1
Daran-Lapujade, P.2
Pronk, J.T.3
de Winde, J.H.4
-
60
-
-
0037474301
-
The genome-wide transcriptional responses of Saccharomyces cerevisiae grown on glucose in aerobic chemostat cultures limited for carbon, nitrogen, phosphorus, or sulfur
-
10.1074/jbc.M209759200, 12414795
-
Boer VM, de Winde JH, Pronk JT, Piper MD. The genome-wide transcriptional responses of Saccharomyces cerevisiae grown on glucose in aerobic chemostat cultures limited for carbon, nitrogen, phosphorus, or sulfur. J Biol Chem 2003, 278:3265-3274. 10.1074/jbc.M209759200, 12414795.
-
(2003)
J Biol Chem
, vol.278
, pp. 3265-3274
-
-
Boer, V.M.1
de Winde, J.H.2
Pronk, J.T.3
Piper, M.D.4
-
61
-
-
12844281816
-
Two- dimensional transcriptome analysis in chemostat cultures. Combinatorial effects of oxygen availability and macronutrient limitation in Saccharomyces cerevisiae
-
Tai SL, Boer VM, Daran-Lapujade P, Walsh MC, de Winde JH, Daran JM, Pronk JT. Two- dimensional transcriptome analysis in chemostat cultures. Combinatorial effects of oxygen availability and macronutrient limitation in Saccharomyces cerevisiae. J Biol Chem 2005, 280:437-447.
-
(2005)
J Biol Chem
, vol.280
, pp. 437-447
-
-
Tai, S.L.1
Boer, V.M.2
Daran-Lapujade, P.3
Walsh, M.C.4
de Winde, J.H.5
Daran, J.M.6
Pronk, J.T.7
-
62
-
-
0036135461
-
Genomic analyses of anaerobically induced genes in Saccharomyces cerevisiae: functional roles of Rox1 and other factors in mediating the anoxic response
-
10.1128/JB.184.1.250-265.2002, 134782, 11741867
-
Kwast KE, Lai LC, Menda N, James DT, Aref S, Burke PV. Genomic analyses of anaerobically induced genes in Saccharomyces cerevisiae: functional roles of Rox1 and other factors in mediating the anoxic response. J Bacteriol 2002, 184:250-265. 10.1128/JB.184.1.250-265.2002, 134782, 11741867.
-
(2002)
J Bacteriol
, vol.184
, pp. 250-265
-
-
Kwast, K.E.1
Lai, L.C.2
Menda, N.3
James, D.T.4
Aref, S.5
Burke, P.V.6
-
63
-
-
0025318231
-
Physiology of Saccharomyces cerevisiae in anaerobic glucose-limited chemostat cultures
-
Verduyn C, Postma E, Scheffers WA, Van Dijken JP. Physiology of Saccharomyces cerevisiae in anaerobic glucose-limited chemostat cultures. J Gen Appl Microbiol 1990, 136:395-403.
-
(1990)
J Gen Appl Microbiol
, vol.136
, pp. 395-403
-
-
Verduyn, C.1
Postma, E.2
Scheffers, W.A.3
Van Dijken, J.P.4
-
64
-
-
0025910658
-
A theoretical evaluation of growth yields of yeasts
-
10.1007/BF00582119, 2059011
-
Verduyn C, Stouthamer AH, Scheffers WA, Dijken JP. A theoretical evaluation of growth yields of yeasts. Antonie Van Leeuwenhoek 1991, 59:49-63. 10.1007/BF00582119, 2059011.
-
(1991)
Antonie Van Leeuwenhoek
, vol.59
, pp. 49-63
-
-
Verduyn, C.1
Stouthamer, A.H.2
Scheffers, W.A.3
Dijken, J.P.4
-
65
-
-
0035170286
-
Stoichiometry and compartmentation of NADH metabolism in Saccharomyces cerevisiae
-
10.1111/j.1574-6976.2001.tb00570.x, 11152939
-
Bakker BM, Overkamp KM, van Maris AJ, Kotter P, Luttik MA, van Dijken JP, Pronk JT. Stoichiometry and compartmentation of NADH metabolism in Saccharomyces cerevisiae. FEMS Microbiol Rev 2001, 25:15-37. 10.1111/j.1574-6976.2001.tb00570.x, 11152939.
-
(2001)
FEMS Microbiol Rev
, vol.25
, pp. 15-37
-
-
Bakker, B.M.1
Overkamp, K.M.2
van Maris, A.J.3
Kotter, P.4
Luttik, M.A.5
van Dijken, J.P.6
Pronk, J.T.7
-
66
-
-
0016196357
-
Succinic acid production by yeasts grown under different hypoxic conditions
-
10.1007/BF01659183, 4598921
-
Lupiañez JA, Machado A, Nuñez de Castro I, Mayor F. Succinic acid production by yeasts grown under different hypoxic conditions. Mol Cell Biochem 1974, 3:113-116. 10.1007/BF01659183, 4598921.
-
(1974)
Mol Cell Biochem
, vol.3
, pp. 113-116
-
-
Lupiañez, J.A.1
Machado, A.2
Nuñez de Castro, I.3
Mayor, F.4
-
67
-
-
0031015551
-
Flux distributions in anaerobic, glucose-limited continuous cultures of Saccharomyces cerevisiae
-
10.1099/00221287-143-1-203, 9025295
-
Nissen TL, Schulze U, Nielsen J, Villadsen J. Flux distributions in anaerobic, glucose-limited continuous cultures of Saccharomyces cerevisiae. Microbiology 1997, 143:203-218. 10.1099/00221287-143-1-203, 9025295.
-
(1997)
Microbiology
, vol.143
, pp. 203-218
-
-
Nissen, T.L.1
Schulze, U.2
Nielsen, J.3
Villadsen, J.4
-
68
-
-
0141480110
-
Investigation by 13C-NMR and tricarboxylic acid (TCA) deletion mutant analysis of pathways for succinate formation in Saccharomyces cerevisiae during anaerobic fermentation
-
10.1099/mic.0.26007-0, 12949191
-
Camarasa C, Grivet JP, Dequin S. Investigation by 13C-NMR and tricarboxylic acid (TCA) deletion mutant analysis of pathways for succinate formation in Saccharomyces cerevisiae during anaerobic fermentation. Microbiology 2003, 149:2669-2678. 10.1099/mic.0.26007-0, 12949191.
-
(2003)
Microbiology
, vol.149
, pp. 2669-2678
-
-
Camarasa, C.1
Grivet, J.P.2
Dequin, S.3
-
69
-
-
0036208187
-
Oxygen addition and sterol synthesis in Saccharomyces cerevisiae during enological fermentation
-
10.1263/jbb.93.176, 16233184
-
Fornairon-Bonnefond C, Demaretz V, Rosenfeld E, Salmon JM. Oxygen addition and sterol synthesis in Saccharomyces cerevisiae during enological fermentation. J Biosci Bioeng 2002, 93:176-182. 10.1263/jbb.93.176, 16233184.
-
(2002)
J Biosci Bioeng
, vol.93
, pp. 176-182
-
-
Fornairon-Bonnefond, C.1
Demaretz, V.2
Rosenfeld, E.3
Salmon, J.M.4
-
70
-
-
0002587184
-
Anaerobic nutrition of Saccharomyces cerevisiae. I. Ergosterol requirement for growth in a defined medium
-
Andreasen AA, Stier TJB. Anaerobic nutrition of Saccharomyces cerevisiae. I. Ergosterol requirement for growth in a defined medium. J Cel Comp Physiol 1953, 41:23-26.
-
(1953)
J Cel Comp Physiol
, vol.41
, pp. 23-26
-
-
Andreasen, A.A.1
Stier, T.J.B.2
-
71
-
-
0000493179
-
Anaerobic nutrition of saccharomyces cerevisiae. II. Unsaturated fatty and requirement for growth in a defined medium
-
Andreasen AA, Stier TJB. Anaerobic nutrition of saccharomyces cerevisiae. II. Unsaturated fatty and requirement for growth in a defined medium. J Cel Comp Physiol 1954, 43:271-281.
-
(1954)
J Cel Comp Physiol
, vol.43
, pp. 271-281
-
-
Andreasen, A.A.1
Stier, T.J.B.2
-
72
-
-
0032915379
-
Stuck and sluggish fermentations
-
Bisson LF. Stuck and sluggish fermentations. Am J Enol Viticul 1999, 50:107.
-
(1999)
Am J Enol Viticul
, vol.50
, pp. 107
-
-
Bisson, L.F.1
-
73
-
-
13244257154
-
Analysis of Saccharomyces cerevisiae hexose carrier expression during wine fermentation: both low- and high-affinity Hxt transporters are expressed
-
10.1016/j.femsyr.2004.09.005, 15691740
-
Perez M, Luyten K, Michel R, Riou C, Blondin B. Analysis of Saccharomyces cerevisiae hexose carrier expression during wine fermentation: both low- and high-affinity Hxt transporters are expressed. FEMS Yeast Res 2005, 5:351-361. 10.1016/j.femsyr.2004.09.005, 15691740.
-
(2005)
FEMS Yeast Res
, vol.5
, pp. 351-361
-
-
Perez, M.1
Luyten, K.2
Michel, R.3
Riou, C.4
Blondin, B.5
-
74
-
-
0030891998
-
Kinetic characterization of individual hexose transporters of Saccharomyces cerevisiae and their relation to the triggering mechanisms of glucose repression
-
10.1111/j.1432-1033.1997.00324.x, 9151960
-
Reifenberger E, Boles E, Ciriacy M. Kinetic characterization of individual hexose transporters of Saccharomyces cerevisiae and their relation to the triggering mechanisms of glucose repression. Eur J Biochem 1997, 245:324-333. 10.1111/j.1432-1033.1997.00324.x, 9151960.
-
(1997)
Eur J Biochem
, vol.245
, pp. 324-333
-
-
Reifenberger, E.1
Boles, E.2
Ciriacy, M.3
-
75
-
-
0037096155
-
The hexose transporters of Saccharomyces cerevisiae play different roles during enological fermentation
-
10.1002/yea.869, 12185841
-
Luyten K, Riou C, Blondin B. The hexose transporters of Saccharomyces cerevisiae play different roles during enological fermentation. Yeast 2002, 19:713-726. 10.1002/yea.869, 12185841.
-
(2002)
Yeast
, vol.19
, pp. 713-726
-
-
Luyten, K.1
Riou, C.2
Blondin, B.3
-
76
-
-
0036728274
-
The genomics of yeast responses to environmental stress and starvation
-
10.1007/s10142-002-0058-2, 12192591
-
Gasch AP, Werner-Washburne M. The genomics of yeast responses to environmental stress and starvation. Funct Integr Genomics 2002, 2:181-192. 10.1007/s10142-002-0058-2, 12192591.
-
(2002)
Funct Integr Genomics
, vol.2
, pp. 181-192
-
-
Gasch, A.P.1
Werner-Washburne, M.2
-
77
-
-
70349251138
-
Comparing the transcriptomes of wine yeast strains: toward understanding the interaction between environment and transcriptome during fermentation
-
10.1007/s00253-009-2204-4, 19711068
-
Rossouw D, Bauer FF. Comparing the transcriptomes of wine yeast strains: toward understanding the interaction between environment and transcriptome during fermentation. Appl Microbiol Biotechnol 2009, 84:937-954. 10.1007/s00253-009-2204-4, 19711068.
-
(2009)
Appl Microbiol Biotechnol
, vol.84
, pp. 937-954
-
-
Rossouw, D.1
Bauer, F.F.2
-
78
-
-
0028151517
-
Induction of major heat-shock proteins of Saccharomyces cerevisiae, including plasma membrane Hsp30, by ethanol levels above a critical threshold
-
10.1099/13500872-140-11-3031, 7812443
-
Piper PW, Talreja K, Panaretou B, Moradas-Ferreira P, Byrne K, Praekelt UM, Meacock P, Recnacq M, Boucherie H. Induction of major heat-shock proteins of Saccharomyces cerevisiae, including plasma membrane Hsp30, by ethanol levels above a critical threshold. Microbiology 1994, 140:3031-3038. 10.1099/13500872-140-11-3031, 7812443.
-
(1994)
Microbiology
, vol.140
, pp. 3031-3038
-
-
Piper, P.W.1
Talreja, K.2
Panaretou, B.3
Moradas-Ferreira, P.4
Byrne, K.5
Praekelt, U.M.6
Meacock, P.7
Recnacq, M.8
Boucherie, H.9
-
79
-
-
54949083874
-
Growth temperature exerts differential physiological and transcriptional responses in laboratory and wine strains of Saccharomyces cerevisiae
-
10.1128/AEM.00602-08, 2570279, 18723660
-
Pizarro FJ, Jewett MC, Nielsen J, Agosin E. Growth temperature exerts differential physiological and transcriptional responses in laboratory and wine strains of Saccharomyces cerevisiae. Appl Environ Microbiol 2008, 74:6358-6368. 10.1128/AEM.00602-08, 2570279, 18723660.
-
(2008)
Appl Environ Microbiol
, vol.74
, pp. 6358-6368
-
-
Pizarro, F.J.1
Jewett, M.C.2
Nielsen, J.3
Agosin, E.4
-
80
-
-
53049109225
-
Quantitative analysis of the high temperature-induced glycolytic flux increase in Saccharomyces cerevisiae reveals dominant metabolic regulation
-
10.1074/jbc.M802908200, 18562308
-
Postmus J, Canelas AB, Bouwman J, Bakker BM, van Gulik W, de Mattos M, Brul S, Smits GJ. Quantitative analysis of the high temperature-induced glycolytic flux increase in Saccharomyces cerevisiae reveals dominant metabolic regulation. J Biol Chem 2008, 283:23524-23532. 10.1074/jbc.M802908200, 18562308.
-
(2008)
J Biol Chem
, vol.283
, pp. 23524-23532
-
-
Postmus, J.1
Canelas, A.B.2
Bouwman, J.3
Bakker, B.M.4
van Gulik, W.5
de Mattos, M.6
Brul, S.7
Smits, G.J.8
-
81
-
-
2942526907
-
Biomass content governs fermentation rate in nitrogen- deficient wine musts
-
10.1128/AEM.70.6.3392-3400.2004, 427798, 15184136
-
Varela C, Pizarro F, Agosin E. Biomass content governs fermentation rate in nitrogen- deficient wine musts. Appl Environ Microbiol 2004, 70:3392-3400. 10.1128/AEM.70.6.3392-3400.2004, 427798, 15184136.
-
(2004)
Appl Environ Microbiol
, vol.70
, pp. 3392-3400
-
-
Varela, C.1
Pizarro, F.2
Agosin, E.3
-
82
-
-
0032552815
-
Effect of Escherichia coli biomass composition on central metabolic fluxes predicted by a stoichiometric model
-
Pramanik J, Keasling JD. Effect of Escherichia coli biomass composition on central metabolic fluxes predicted by a stoichiometric model. Biotechnol Bioeng 2000, 60:230-238.
-
(2000)
Biotechnol Bioeng
, vol.60
, pp. 230-238
-
-
Pramanik, J.1
Keasling, J.D.2
-
83
-
-
33746238073
-
Effects of GPD1 overexpression in Saccharomyces cerevisiae commercial wine yeast strains lacking ALD6 genes
-
10.1128/AEM.02975-05, 1489326, 16820460
-
Cambon B, Monteil V, Remize F, Camarasa C, Dequin S. Effects of GPD1 overexpression in Saccharomyces cerevisiae commercial wine yeast strains lacking ALD6 genes. Appl Environ Microbiol 2006, 72:4688-4694. 10.1128/AEM.02975-05, 1489326, 16820460.
-
(2006)
Appl Environ Microbiol
, vol.72
, pp. 4688-4694
-
-
Cambon, B.1
Monteil, V.2
Remize, F.3
Camarasa, C.4
Dequin, S.5
-
84
-
-
0037087377
-
Decreasing acetic acid accumulation by a glycerol overproducing strain of Saccharomyces cerevisiae by deleting the ALD 6 aldehyde dehydrogenase gene
-
10.1002/yea.834, 11870853
-
Eglinton JM, Heinrich AJ, Pollnitz AP, Langridge P, Henschke PA, de Barros Lopes M. Decreasing acetic acid accumulation by a glycerol overproducing strain of Saccharomyces cerevisiae by deleting the ALD 6 aldehyde dehydrogenase gene. Yeast 2002, 19:295-301. 10.1002/yea.834, 11870853.
-
(2002)
Yeast
, vol.19
, pp. 295-301
-
-
Eglinton, J.M.1
Heinrich, A.J.2
Pollnitz, A.P.3
Langridge, P.4
Henschke, P.A.5
de Barros Lopes, M.6
-
85
-
-
0032939504
-
Glycerol overproduction by engineered Saccharomyces cerevisiae wine yeast strains leads to substantial changes in by-product formation and to a stimulation of fermentation rate in stationary phase
-
90995, 9872772
-
Remize F, Roustan J, Sablayrolles J, Barre P, Dequin S. Glycerol overproduction by engineered Saccharomyces cerevisiae wine yeast strains leads to substantial changes in by-product formation and to a stimulation of fermentation rate in stationary phase. Appl Environ Microbiol 1999, 65:143-149. 90995, 9872772.
-
(1999)
Appl Environ Microbiol
, vol.65
, pp. 143-149
-
-
Remize, F.1
Roustan, J.2
Sablayrolles, J.3
Barre, P.4
Dequin, S.5
-
86
-
-
59449103917
-
Interruption of glycerol pathway in industrial alcoholic yeasts to improve the ethanol production
-
10.1007/s00253-008-1777-7, 19018525
-
Guo Z, Zhang L, Ding Z, Wang ZX, Shi GY. Interruption of glycerol pathway in industrial alcoholic yeasts to improve the ethanol production. Appl Microbiol Biotechnol 2009, 82:287-292. 10.1007/s00253-008-1777-7, 19018525.
-
(2009)
Appl Microbiol Biotechnol
, vol.82
, pp. 287-292
-
-
Guo, Z.1
Zhang, L.2
Ding, Z.3
Wang, Z.X.4
Shi, G.Y.5
-
87
-
-
0033856517
-
Engineering of the pyruvate dehydrogenase bypass in Saccharomyces cerevisiae: role of the cytosolic Mg2+ and mitochondrial K+ acetaldehyde dehydrogenases Ald6p and Ald4p in acetate formation during alcoholic fermentation
-
10.1128/AEM.66.8.3151-3159.2000, 92127, 10919763
-
Remize F, Andrieu E, Dequin S. Engineering of the pyruvate dehydrogenase bypass in Saccharomyces cerevisiae: role of the cytosolic Mg2+ and mitochondrial K+ acetaldehyde dehydrogenases Ald6p and Ald4p in acetate formation during alcoholic fermentation. Appl Environ Microbiol 2000, 66:3151-3159. 10.1128/AEM.66.8.3151-3159.2000, 92127, 10919763.
-
(2000)
Appl Environ Microbiol
, vol.66
, pp. 3151-3159
-
-
Remize, F.1
Andrieu, E.2
Dequin, S.3
-
88
-
-
4344560522
-
Functional analysis of the ALD gene family of Saccharomyces cerevisiae during anaerobic growth on glucose: the NADP+-dependent Ald6p and Ald5p isoforms play a major role in acetate formation
-
10.1099/mic.0.26999-0, 15256563
-
Saint-Prix F, Bonquist L, Dequin S. Functional analysis of the ALD gene family of Saccharomyces cerevisiae during anaerobic growth on glucose: the NADP+-dependent Ald6p and Ald5p isoforms play a major role in acetate formation. Microbiology 2004, 150:2209-2220. 10.1099/mic.0.26999-0, 15256563.
-
(2004)
Microbiology
, vol.150
, pp. 2209-2220
-
-
Saint-Prix, F.1
Bonquist, L.2
Dequin, S.3
-
89
-
-
33846465015
-
Effect of FPS1 deletion on the fermentation properties of Saccharomyces cerevisiae
-
10.1111/j.1472-765X.2006.02041.x, 17257263
-
Zhang A, Kong Q, Cao L, Chen X. Effect of FPS1 deletion on the fermentation properties of Saccharomyces cerevisiae. Lett Appl Microbiol 2007, 44:212-217. 10.1111/j.1472-765X.2006.02041.x, 17257263.
-
(2007)
Lett Appl Microbiol
, vol.44
, pp. 212-217
-
-
Zhang, A.1
Kong, Q.2
Cao, L.3
Chen, X.4
-
90
-
-
75749134466
-
Elimination of glycerol production in anaerobic cultures of a Saccharomyces cerevisiae strain engineered to use acetic acid as an electron acceptor
-
10.1128/AEM.01772-09, 2798634, 19915031
-
Guadalupe Medina V, Almering MJH, van Maris AJA, Pronk JT. Elimination of glycerol production in anaerobic cultures of a Saccharomyces cerevisiae strain engineered to use acetic acid as an electron acceptor. Appl Environ Microbiol 2010, 76:190-195. 10.1128/AEM.01772-09, 2798634, 19915031.
-
(2010)
Appl Environ Microbiol
, vol.76
, pp. 190-195
-
-
Guadalupe Medina, V.1
Almering, M.J.H.2
van Maris, A.J.A.3
Pronk, J.T.4
-
91
-
-
33745178476
-
Integrated analysis of regulatory and metabolic networks reveals novel regulatory mechanisms in Saccharomyces cerevisiae
-
10.1101/gr.4083206, 1457053, 16606697
-
Herrgård MJ, Lee BS, Portnoy V, Palsson B. Integrated analysis of regulatory and metabolic networks reveals novel regulatory mechanisms in Saccharomyces cerevisiae. Genome Res 2006, 16:627-635. 10.1101/gr.4083206, 1457053, 16606697.
-
(2006)
Genome Res
, vol.16
, pp. 627-635
-
-
Herrgård, M.J.1
Lee, B.S.2
Portnoy, V.3
Palsson, B.4
-
92
-
-
0037424661
-
Constraints-based models: regulation of gene expression reduces the steady-state solution space
-
10.1006/jtbi.2003.3071, 12642111
-
Covert MW, Palsson BO. Constraints-based models: regulation of gene expression reduces the steady-state solution space. J Theor Biol 2003, 221:309-325. 10.1006/jtbi.2003.3071, 12642111.
-
(2003)
J Theor Biol
, vol.221
, pp. 309-325
-
-
Covert, M.W.1
Palsson, B.O.2
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