메뉴 건너뛰기




Volumn 7, Issue 3, 2011, Pages 173-199

Exploring QSAR, pharmacophore mapping and docking studies and virtual library generation for cycloguanil derivatives as PfDHFR-TS inhibitors

Author keywords

Antimalarials; Dihydrofolate reductase thymidylate synthase; Docking; Pharmacophore; QSAR; Validation

Indexed keywords

ANTIMALARIAL AGENT; CYCLOGUANIL DERIVATIVE; DIHYDROFOLATE REDUCTASE; DIHYDROFOLATE REDUCTASE INHIBITOR; THYMIDYLATE SYNTHASE; THYMIDYLATE SYNTHASE INHIBITOR; TRIAZINE DERIVATIVE; UNCLASSIFIED DRUG;

EID: 79955776762     PISSN: 15734064     EISSN: None     Source Type: Journal    
DOI: 10.2174/157340611795564295     Document Type: Article
Times cited : (19)

References (56)
  • 1
    • 27944474130 scopus 로고    scopus 로고
    • WHO, Geneva, Switzerland
    • World Malaria Report, 2008, WHO, Geneva, Switzerland. www.who.int/entity/malaria/publications/atoz/.../en/index.html
    • (2008) World Malaria Report
  • 3
    • 31944444061 scopus 로고    scopus 로고
    • 2+ ATPase), tctp, mdr1, and cg10
    • DOI 10.1128/AAC.50.2.480-489.2006
    • Afonso, A.; Hunt, P.; Cheesman, S.; Alves, A.C.; Cunha, C.V.; do Rosário, V.; Cravo, P. Malaria parasites can develop stable resistance to artemisinin but lack mutations in candidate genes atp6 (encoding the sarcoplasmic and endoplasmic reticulum Ca2+ ATPase), tctp, mdr1, and cg10. Antimicrob Agents Chemother., 2006, 50, 480-489. (Pubitemid 43190956)
    • (2006) Antimicrobial Agents and Chemotherapy , vol.50 , Issue.2 , pp. 480-489
    • Afonso, A.1    Hunt, P.2    Cheesman, S.3    Alves, A.C.4    Cunha, C.V.5    Do Rosario, V.6    Cravo, P.7
  • 6
    • 14144253009 scopus 로고    scopus 로고
    • Mechanisms of resistance of malaria parasites to antifolates
    • DOI 10.1124/pr.57.1.4
    • Gregson, A.; Plowe, C.V. Mechanisms of resistance of malaria parasites to antifolates. Pharmacol. Rev., 2005, 57, 117-145. (Pubitemid 40283971)
    • (2005) Pharmacological Reviews , vol.57 , Issue.1 , pp. 117-145
    • Gregson, A.1    Plowe, C.V.2
  • 7
    • 14844342386 scopus 로고    scopus 로고
    • And RNA syn thesis: Antifolates
    • Kompis, I.M.; Islam, K.; Then, R.L. DNA and RNA synthesis: Antifolates, Chem. Rev. 2005, 105, 593-620.
    • (2005) Chem. Rev. , vol.105 , pp. 593-620
    • Kompis, I.M.1    Islam, K.2    Dna, L.T.R.3
  • 8
    • 0035207437 scopus 로고    scopus 로고
    • Free energy force field (FEFF) 3D-QSAR analysis of a set of Plasmodium falciparum dihydrofolate reductase inhibitors
    • DOI 10.1023/A:1013199108020
    • Santos-Filho, O.A.; Mishra, R.K.; Hopfinger, A.J. Free energy force field (FEFF) 3DQSAR analysis of a set of P. falciparum dihydrofolate reductase inhibitors, J. Comput.-Aided Mol. Des., 2001, 15, 787-810. (Pubitemid 33133416)
    • (2001) Journal of Computer-Aided Molecular Design , vol.15 , Issue.9 , pp. 787-810
    • Santos-Filho, O.A.1    Mishra, R.K.2    Hopfinger, A.J.3
  • 9
    • 39949084319 scopus 로고    scopus 로고
    • QSAR using evolved neural networks for the inhibition of mutant PfDHFR by pyrimethamine derivatives
    • Hecht, D.; Cheung, M.; Fogel, G.B. QSAR using evolved neural networks for the inhibition of mutant PfDHFR by pyrimethamine derivatives. Biosystems, 2008, 92, 10-15.
    • (2008) Biosystems , vol.92 , pp. 10-15
    • Hecht, D.1    Cheung, M.2    Fogel, G.B.3
  • 11
    • 0346882949 scopus 로고    scopus 로고
    • Computational studies of new potential antimalarial compounds - Stereoelectronic complementarity with the receptor
    • DOI 10.1023/B:JCAM.0000005754.24588.a0
    • Portela, C.; Afonso, C.M.; Pinto, M.M.; Ramos, M.J. Computational studies of new potential antimalarial compounds- stereoelectronic complementarity with the receptor. J. Comput.- Aided Mol. Des., 2003, 17, 583-595. (Pubitemid 38016173)
    • (2003) Journal of Computer-Aided Molecular Design , vol.17 , Issue.9 , pp. 583-595
    • Portela, C.1    Afonso, C.M.M.2    Pinto, M.M.M.3    Ramos, M.J.4
  • 12
    • 3843137418 scopus 로고    scopus 로고
    • Three-dimensional quantitative structure-activity relationship analysis of a set of Plasmodium falciparum dihydrofolate reductase inhibitors using a pharmacophore generation approach
    • DOI 10.1021/jm040769c
    • Parenti, M.D.; Pacchioni, S.; Ferrari, A.M.; Rastelli, G. Threedimensional quantitative structure-activity relationship analysis of a set of P. falciparum dihydrofolate reductase inhibitors using a pharmacophore generation approach. J. Med. Chem., 2004, 47, 4258-4267. (Pubitemid 39045431)
    • (2004) Journal of Medicinal Chemistry , vol.47 , Issue.17 , pp. 4258-4267
    • Parenti, M.D.1    Pacchioni, S.2    Ferrari, A.M.3    Rastelli, G.4
  • 15
    • 0037008362 scopus 로고    scopus 로고
    • Molecular modeling of wild-type and antifolate resistant mutant Plasmodium falciparum DHFR
    • DOI 10.1016/S0301-4622(02)00077-7, PII S0301462202000777
    • Delfino, R.T.; Santos-Filho, O.A.; Figueroa-Villar, J.D. Molecular modeling of wildtype and antifolate resistant mutant P. falciparum DHFR. Biophys. Chem., 2002, 98, 287-300. (Pubitemid 34786441)
    • (2002) Biophysical Chemistry , vol.98 , Issue.3 , pp. 287-300
    • Delfino, R.T.1    Santos-Filho, O.A.2    Figueroa-Villar, J.D.3
  • 16
    • 38649091945 scopus 로고    scopus 로고
    • Modeling the inhibition of quadruple mutant Plasmodium falciparum dihydrofolate reductase by pyrimethamine derivatives
    • Fogel, G.B.; Cheung, M.; Pittman, E.; Hecht, D. Modeling the inhibition of quadruple mutant Plasmodium falciparum dihydrofolate reductase by pyrimethamine derivatives. Comput. Aided Mol. Design, 2008, 22, 29-38.
    • (2008) Comput. Aided Mol. Design , vol.22 , pp. 29-38
    • Fogel, G.B.1    Cheung, M.2    Pittman, E.3    Hecht, D.4
  • 17
    • 40649099359 scopus 로고    scopus 로고
    • In silico screening against wild-type and mutant Plasmodium falciparum dihydrofolate reductase
    • DOI 10.1016/j.jmgm.2007.10.006, PII S1093326307001556
    • Fogel, G.B.; Cheung, M.; Pittman, E.; Hecht, D. In silico screening against wild-type and mutant Plasmodium falciparum dihydrofolate reductase. J. Mol. Graph. Model, 2008, 26, 1145-1152. (Pubitemid 351374852)
    • (2008) Journal of Molecular Graphics and Modelling , vol.26 , Issue.7 , pp. 1145-1152
    • Fogel, G.B.1    Cheung, M.2    Pittman, E.3    Hecht, D.4
  • 18
    • 0035146602 scopus 로고    scopus 로고
    • A search for sources of drug resistance by the 4D-QSAR analysis of a set of antimalarial dihydrofolate reductase inhibitors
    • DOI 10.1023/A:1011152818340
    • Santos, O.A.; Hopfinger, A.J. A search for sources of drug resistance by the 4D-QSAR analysis of a set of antimalarial dihydrofolate reductase inhibitors. J. Comput. Aided Mol. Design, 2001, 15, pp. 1-12. (Pubitemid 32124155)
    • (2001) Journal of Computer-Aided Molecular Design , vol.15 , Issue.1 , pp. 1-12
    • Santos-Filho, O.A.1    Hopfinger, A.J.2
  • 19
    • 68149137312 scopus 로고    scopus 로고
    • Structure-activity relationship and comparative docking studies for cycloguanil analogs as PfDHFR-TS inhibitors
    • Sivaprakasam, P.; Tosso, P.N.; Doerksen, R.J. Structure-activity relationship and comparative docking studies for cycloguanil analogs as PfDHFR-TS inhibitors. J. Chem. Inf. Model., 2009, 49, 1787-1796.
    • (2009) J. Chem. Inf. Model. , vol.49 , pp. 1787-1796
    • Sivaprakasam, P.1    Tosso, P.N.2    Doerksen, R.J.3
  • 20
    • 70350564966 scopus 로고    scopus 로고
    • 3D-QSAR analysis of cycloguanil derivatives as inhibitors of A16V + S108T mutant Plasmodium falciparum dihydrofolate reductase enzyme
    • Adane, L.; Bharatam, P.V. 3D-QSAR analysis of cycloguanil derivatives as inhibitors of A16V + S108T mutant Plasmodium falciparum dihydrofolate reductase enzyme. J. Mol. Graph. Model., 2009, 28, 357-367.
    • (2009) J. Mol. Graph. Model. , vol.28 , pp. 357-367
    • Adane, L.1    Bharatam, P.V.2
  • 21
    • 77953575554 scopus 로고    scopus 로고
    • Quantitative structure-activity relationships for cycloguanil analogs as PfDHFR inhibitors using mathematical molecular descriptors
    • Basak S.C.; Mills, D. Quantitative structure-activity relationships for cycloguanil analogs as PfDHFR inhibitors using mathematical molecular descriptors. SAR QSAR Environ. Res., 2010, 21, 215-229.
    • (2010) SAR QSAR Environ. Res. , vol.21 , pp. 215-229
    • Basak, S.C.1    Mills, D.2
  • 23
    • 0037449359 scopus 로고    scopus 로고
    • Synthesis of solution-phase combinatorial library of 4,6-diamino-1,2- dihydro-1,3,5-triazine and identification of new leads against A16V+S108T mutant dihydrofolate reductase of Plasmodium falciparum
    • DOI 10.1016/S0968-0896(02)00344-9, PII S0968089602003449
    • Vilaivan, T.; Saesaengseerung, N.; Jarprung, D.; Kamchonwongpaisan, S.; Sirawaraporn, W.; Yuthavong, Y. Synthesis of solutionphase combinatorial library of 4,6-diamino-1,2-dihydro-1,3,5- triazine and identification of new leads against A16V+S108T mutant dihydrofolate reductase of Plasmodium falciparum. Bioorg. Med. Chem., 2003, 11, 217-224. (Pubitemid 35418264)
    • (2003) Bioorganic and Medicinal Chemistry , vol.11 , Issue.2 , pp. 217-224
    • Vilaivan, T.1    Saesaengseerung, N.2    Jarprung, D.3    Kamchonwongpaisan, S.4    Sirawaraporn, W.5    Yuthavong, Y.6
  • 24
    • 0034644146 scopus 로고    scopus 로고
    • Development of a lead inhibitor for the A16V+S108T mutant of dihydrofolate reductase from the cycloguanil-resistant strain (T9/94) of Plasmodium falciparum
    • DOI 10.1021/jm0009181
    • Yuthavong, Y.; Vilaivan, T.; Chareonsethakul, N.; Kamchonwongpaisan, S.; Sirawaraporn, W.; Quarrell, R.; Lowe, G. Development of a lead inhibitor for the A16V+S108T mutant of dihydrofolate reductase from the cycloguanil-resistant strain (T9/94) of Plasmodium falciparum. J. Med. Chem., 2000, 43, 2738-2744. (Pubitemid 30463922)
    • (2000) Journal of Medicinal Chemistry , vol.43 , Issue.14 , pp. 2738-2744
    • Yuthavong, Y.1    Vilaivan, T.2    Chareonsethakul, N.3    Kamchonwongpaisan, S.4    Sirawaraporn, W.5    Quarrell, R.6    Lowe, G.7
  • 27
    • 0028467707 scopus 로고
    • Application of genetic function approximation to quantitative structure-activity relationships and quantitative structure-property relationships
    • Rogers, D.; Hopfinger, A. J. Application of genetic function approximation to quantitative structure-activity relationships and quantitative structure-property relationships. J. Chem. Inf. Comput. Sci., 1994, 34, 854-866.
    • (1994) J. Chem. Inf. Comput. Sci. , vol.34 , pp. 854-866
    • Rogers, D.1    Hopfinger, A.J.2
  • 29
    • 0003764428 scopus 로고
    • Technical Report No. 102, Laboratory for Computational Statistics, Department of Statistics, Stanford University; Stanford, CA, Nov revised Aug 1990
    • Friedman, J. Multivariate AdaptiveRegression Splines, Technical Report No. 102, Laboratory for Computational Statistics, Department of Statistics, Stanford University; Stanford, CA, Nov 1988 (revised Aug 1990).
    • (1988) Multivariate AdaptiveRegression Splines
    • Friedman, J.1
  • 32
    • 0032474873 scopus 로고    scopus 로고
    • Three-dimensional quantitative similarity-activity relationships (3D QSiAR) from SEAL similarity matrices
    • DOI 10.1021/jm970732a
    • Kubinyi, H.; Hamprecht, FA.; Mietzner, T. Three-dimensional quantitative structure-activity relationships (3D QSiAR) from SEAL similarity matrices. J. Med. Chem., 1998, 41, 2553-2564. (Pubitemid 28321904)
    • (1998) Journal of Medicinal Chemistry , vol.41 , Issue.14 , pp. 2553-2564
    • Kubinyi, H.1    Hamprecht, F.A.2    Mietzner, T.3
  • 35
    • 41949116226 scopus 로고    scopus 로고
    • On some aspects of variable selection for partial least squares regression models
    • Roy, P.P.; Roy, K. On some aspects of variable selection for partial least squares regression models, QSAR Comb. Sci., 2008, 27, 302-313.
    • (2008) QSAR Comb. Sci. , vol.27 , pp. 302-313
    • Roy, P.P.1    Roy, K.2
  • 36
    • 67249129284 scopus 로고    scopus 로고
    • On two novel parameters for validation of predictive QSAR models
    • Roy, P. P.; Paul, S.; Mitra, I.; Roy, K. On two novel parameters for validation of predictive QSAR models. Molecules, 2009, 14, 1660-1701.
    • (2009) Molecules , vol.14 , pp. 1660-1701
    • Roy, P.P.1    Paul, S.2    Mitra, I.3    Roy, K.4
  • 37
    • 74349118668 scopus 로고    scopus 로고
    • 2 as a metric for validation of QSAR models
    • Mitra, I.; Roy, P. P.; Kar, S.; Ojha, P. K.; Roy, K. On further application of rm2 as a metric for validation of QSAR models. J. Chemom., 2010, 24, 22-33.
    • (2010) J. Chemom. , vol.24 , pp. 22-33
    • Mitra, I.1    Roy, P.P.2    Kar, S.3    Ojha, P.K.4    Roy, K.5
  • 38
    • 66149123707 scopus 로고    scopus 로고
    • Exploring 2D and 3D QSARs of 2,4-diphenyl- 1,3-oxazolines for ovicidal activity against tetranychus urticae
    • Roy, K.; Paul, S. Exploring 2D and 3D QSARs of 2,4-diphenyl- 1,3-oxazolines for ovicidal activity against tetranychus urticae. QSAR Comb. Sci., 2009, 28, 406-425.
    • (2009) QSAR Comb. Sci. , vol.28 , pp. 406-425
    • Roy, K.1    Paul, S.2
  • 39
    • 77953942943 scopus 로고    scopus 로고
    • Docking and 3D-QSAR studies of acetohydroxy acid synthase inhibitor sulfonylurea derivatives
    • Roy, K.; Paul, S. Docking and 3D-QSAR studies of acetohydroxy acid synthase inhibitor sulfonylurea derivatives. J. Mol. Model., 2010, 16, 951-964.
    • (2010) J. Mol. Model. , vol.16 , pp. 951-964
    • Roy, K.1    Paul, S.2
  • 40
    • 77956191329 scopus 로고    scopus 로고
    • Chemometric modeling, docking and in silico design of triazolopyrimidine-based dihydroorotate dehydrogenase inhibitors as antimalarials
    • Ojha, P. K.; Roy, K. Chemometric modeling, docking and in silico design of triazolopyrimidine-based dihydroorotate dehydrogenase inhibitors as antimalarials, Eur. J. Med. Chem. 2010, 45, 4645-4656.
    • (2010) Eur. J. Med. Chem. , vol.45 , pp. 4645-4656
    • Ojha, P.K.1    Roy, K.2
  • 41
    • 77954781495 scopus 로고    scopus 로고
    • Chemometric modelling of antimalarial activity of aryltriazolylhydroxamates
    • Ojha, P. K.; Roy, K. Chemometric modelling of antimalarial activity of aryltriazolylhydroxamates. Mol. Simul. 2010, 36, 939-952.
    • (2010) Mol. Simul. , vol.36 , pp. 939-952
    • Ojha, P.K.1    Roy, K.2
  • 42
    • 79955747546 scopus 로고    scopus 로고
    • University of Milano- Bicocca Italy Personal Communication
    • Todeschini, R. Milano Chemometrics, University of Milano- Bicocca, Italy (Personal Communication), 2010.
    • (2010) Todeschini R. Milano Chemometrics
  • 43
    • 78649543896 scopus 로고    scopus 로고
    • Exploring quantitative structure- activity relationship studies of antioxidant phenolic compounds obtained from traditional Chinese medicinal plants
    • Mitra, I.; Saha, A.; Roy, K. Exploring quantitative structure- activity relationship studies of antioxidant phenolic compounds obtained from traditional Chinese medicinal plants. Mol. Simul. 2010, 36, 1067-1079.
    • (2010) Mol. Simul. , vol.36 , pp. 1067-1079
    • Mitra, I.1    Saha, A.2    Roy, K.3
  • 44
    • 56749109624 scopus 로고    scopus 로고
    • Applying PCA and fixed size LS-SVM method for large scale classification problems
    • Hung, Y.H.; Liao, Y.S. Applying PCA and fixed size LS-SVM method for large scale classification problems, Inf. Technol. J., 2008, 7, 890-896.
    • (2008) Inf. Technol. J. , vol.7 , pp. 890-896
    • Hung, Y.H.1    Liao, Y.S.2
  • 45
    • 33646023117 scopus 로고    scopus 로고
    • An introduction to ROC analysis
    • Fawcett, T. An introduction to ROC analysis. Pattern Recognit. Lett., 2006, 27, 861-874.
    • (2006) Pattern Recognit. Lett. , vol.27 , pp. 861-874
    • Fawcett, T.1
  • 46
    • 0002405670 scopus 로고
    • Pharmacophore identification and receptor mapping
    • Humblet, C.; Marshall, G. R. Pharmacophore identification and receptor mapping. Annu. Rep. Med. Chem., 1980, 15, 267-276.
    • (1980) Annu. Rep. Med. Chem. , vol.15 , pp. 267-276
    • Humblet, C.1    Marshall, G.R.2
  • 47
    • 0034934377 scopus 로고    scopus 로고
    • Pharmacophore modeling and three-dimensional database searching for drug design using catalyst
    • Kurogi, Y.; Guner, O.F. Pharmacophore modeling and threedimensional database searching for drug design using catalyst. Curr. Med. Chem., 2001, 8, 1035-1055. (Pubitemid 32633658)
    • (2001) Current Medicinal Chemistry , vol.8 , Issue.9 , pp. 1035-1055
    • Kurogi, Y.1    Guner, O.F.2
  • 48
    • 0037011895 scopus 로고    scopus 로고
    • Pharmacophore mapping of a series of 2,4-diamino-5-deazapteridine inhibitors of Mycobacterium avium complex dihydrofolate reductase
    • DOI 10.1021/jm010360c
    • Debnath, A.K. Pharmacophore Mapping of a Series of 2,4- Diamino-5-deazapteridine Inhibitors of Mycobacterium avium Complex Dihydrofolate Reductase. J. Med. Chem., 2002, 45, 41-53. (Pubitemid 34038541)
    • (2002) Journal of Medicinal Chemistry , vol.45 , Issue.1 , pp. 41-53
    • Debnath, A.K.1
  • 49
    • 84986522856 scopus 로고
    • Poling: Promoting conformational variation
    • Smellie, A.; Teig, S.L.; Towbin, P. Poling: Promoting conformational variation. J Comp. Chem., 1995, 16, 171-187.
    • (1995) J Comp. Chem. , vol.16 , pp. 171-187
    • Smellie, A.1    Teig, S.L.2    Towbin, P.3
  • 51
    • 35248863951 scopus 로고    scopus 로고
    • CAESAR: A new conformer generation algorithm based on recursive buildup and local rotational symmetry consideration
    • DOI 10.1021/ci700136x
    • Li, J.; Ehlers, T.; Sutter, J.; Varma-O'Brien, S.; Kirchmair, J. CAESAR: A New Conformer Generation Algorithm Based on Recursive Buildup and Local Rotational Symmetry Consideration. J. Chem. Inf. Model., 2007, 47, 1923-1932. (Pubitemid 47561140)
    • (2007) Journal of Chemical Information and Modeling , vol.47 , Issue.5 , pp. 1923-1932
    • Li, J.1    Ehlers, T.2    Sutter, J.3    Varma-O'Brien, S.4    Kirchmair, J.5
  • 52
    • 77956188629 scopus 로고    scopus 로고
    • Virtual screening: Gliding to success
    • Kirkpatrick, P., Virtual screening: Gliding to success. Nature Rev Drug Disc., 2004, 3, 294-299.
    • (2004) Nature Rev Drug Disc. , vol.3 , pp. 294-299
    • Kirkpatrick, P.1
  • 54
    • 0025155575 scopus 로고
    • An electrotopological-state index for atoms in molecules
    • Kier, L. B.; Hall, L.H., An electrotopological state index for atoms in molecules, Pharm. Res., 1990, 7, 801-807. (Pubitemid 20332531)
    • (1990) Pharmaceutical Research , vol.7 , Issue.8 , pp. 801-807
    • Kier, L.B.1    Hall, L.H.2
  • 55
    • 0024425638 scopus 로고
    • An index of molecular flexibility from kappa shape attributes
    • Kier, L. B., An index of molecular flexibility from kappa shape attributes, Quant. Struct.-Act. Relat., 1989, 8, 221-224. (Pubitemid 19242018)
    • (1989) Quantitative Structure-Activity Relationships , vol.8 , Issue.3 , pp. 221-224
    • Kier, L.B.1
  • 56
    • 77951437135 scopus 로고    scopus 로고
    • info@umetrics.com, Umea, Sweden
    • UMETRICS SIMCA-P 10.0, info@umetrics.com: www.umetrics.com, Umea, Sweden, 2002.
    • (2002) UMETRICS SIMCA-P 10.0


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.