메뉴 건너뛰기




Volumn 79, Issue 5, 2011, Pages 1458-1477

New insights into the GABA A receptor structure and orthosteric ligand binding: Receptor modeling guided by experimental data

Author keywords

4 (4 piperidyl) 1 hydroxypyrazole; 4 PHP; 4 PIOL; 5 (4 piperidyl) 3 isoxazolol; GRID analysis; Homology modeling; Ligand docking; Molecular dynamics; Spatial restraints

Indexed keywords

3 AMINO 2 (3 CARBOXYPROPYL) 6 (4 METHOXYPHENYL)PYRIDAZINIUM BROMIDE; 3 HYDROXY 5 (4 PIPERIDYL)ISOXAZOLE; 4 (4 PIPERIDYL) 1 HYDROXYPYRAZOLE; 4 AMINOBUTYRIC ACID A RECEPTOR ALPHA1; 4 AMINOBUTYRIC ACID A RECEPTOR BETA2; 4 AMINOBUTYRIC ACID A RECEPTOR GAMMA2; BICUCULLINE; PYRAZOLE DERIVATIVE; UNCLASSIFIED DRUG;

EID: 79954594400     PISSN: 08873585     EISSN: 10970134     Source Type: Journal    
DOI: 10.1002/prot.22975     Document Type: Article
Times cited : (40)

References (87)
  • 1
    • 20044396748 scopus 로고    scopus 로고
    • A receptor channel pharmacology
    • A receptor channel pharmacology. Curr Pharm Des 2005; 11: 1867-1885.
    • (2005) Curr Pharm Des , vol.11 , pp. 1867-1885
    • Johnston, G.A.R.1
  • 4
    • 0015218501 scopus 로고
    • Bicuculline, an antagonist of GABA and synaptic inhibition in the spinal cord of the cat
    • Curtis DR, Duggan AW, Felix D, Johnston GAR. Bicuculline, an antagonist of GABA and synaptic inhibition in the spinal cord of the cat. Brain Res 1971; 32: 69-96.
    • (1971) Brain Res , vol.32 , pp. 69-96
    • Curtis, D.R.1    Duggan, A.W.2    Felix, D.3    Johnston, G.A.R.4
  • 8
    • 0022547501 scopus 로고
    • Pyridazinyl-GABA derivatives as GABA and glycine antagonists in the spinal cord of the cat
    • Gynther BD, Curtis DR. Pyridazinyl-GABA derivatives as GABA and glycine antagonists in the spinal cord of the cat. Neurosci Lett 1986; 68: 211-215.
    • (1986) Neurosci Lett , vol.68 , pp. 211-215
    • Gynther, B.D.1    Curtis, D.R.2
  • 9
    • 33846245154 scopus 로고    scopus 로고
    • A receptor subtypes
    • A receptor subtypes. Adv Pharmacol 2006; 54: 231-263.
    • (2006) Adv Pharmacol , vol.54 , pp. 231-263
    • Sieghart, W.1
  • 13
    • 0027787023 scopus 로고
    • A receptor needs two homologous domains of the β-subunit for activation by GABA but not by pentobarbital
    • A receptor needs two homologous domains of the β-subunit for activation by GABA but not by pentobarbital. Nature 1993; 366: 565-569.
    • (1993) Nature , vol.366 , pp. 565-569
    • Amin, J.1    Weiss, D.S.2
  • 14
    • 0037166316 scopus 로고    scopus 로고
    • 1K70 region mediate GABA and SR-95531 actions
    • 1K70 region mediate GABA and SR-95531 actions. J Biol Chem 2002; 277: 18785-18792.
    • (2002) J Biol Chem , vol.277 , pp. 18785-18792
    • Holden, J.H.1    Czajkowski, C.2
  • 16
    • 0035141668 scopus 로고    scopus 로고
    • Structure and dynamics of the GABA binding pocket: a narrowing cleft that constricts during activation
    • Wagner DA, Czajkowski C. Structure and dynamics of the GABA binding pocket: a narrowing cleft that constricts during activation. J Neurosci 2001; 21: 67-74.
    • (2001) J Neurosci , vol.21 , pp. 67-74
    • Wagner, D.A.1    Czajkowski, C.2
  • 22
    • 10644270878 scopus 로고    scopus 로고
    • A receptor β2 subunit produces a spontaneously open channel: a trigger for channel activation
    • A receptor β2 subunit produces a spontaneously open channel: a trigger for channel activation. J Neurosci 2004; 24: 11226-11235.
    • (2004) J Neurosci , vol.24 , pp. 11226-11235
    • Newell, J.G.1    McDevitt, R.A.2    Czajkowski, C.3
  • 25
    • 2642560397 scopus 로고    scopus 로고
    • Structural and ligand recognition characteristics of an acetylcholine-binding protein from Aplysia californica
    • Hansen SB, Talley TT, Radic Z, Taylor P. Structural and ligand recognition characteristics of an acetylcholine-binding protein from Aplysia californica. J Biol Chem 2004; 279: 24197-24202.
    • (2004) J Biol Chem , vol.279 , pp. 24197-24202
    • Hansen, S.B.1    Talley, T.T.2    Radic, Z.3    Taylor, P.4
  • 27
    • 22144466847 scopus 로고    scopus 로고
    • Crystal structure of acetylcholine-binding protein from Bulinus truncatus reveals the conserved structural scaffold and sites of variation in nicotinic acetylcholine receptors
    • Celie PH, Klaassen RV, van Rossum-Fikkert SE, van Elk R, van Nierop P, Smit AB, Sixma TK. Crystal structure of acetylcholine-binding protein from Bulinus truncatus reveals the conserved structural scaffold and sites of variation in nicotinic acetylcholine receptors. J Biol Chem 2005; 280: 26457-26466.
    • (2005) J Biol Chem , vol.280 , pp. 26457-26466
    • Celie, P.H.1    Klaassen, R.V.2    van Rossum-Fikkert, S.E.3    van Elk, R.4    van Nierop, P.5    Smit, A.B.6    Sixma, T.K.7
  • 28
    • 34547520128 scopus 로고    scopus 로고
    • Crystal structure of the extracellular domain of nAChR α1 bound to α-bungarotoxin at 1.94 Å resolution
    • Dellisanti CD, Yao Y, Stroud JC, Wang ZZ, Chen L. Crystal structure of the extracellular domain of nAChR α1 bound to α-bungarotoxin at 1.94 Å resolution. Nat Neurosci 2007; 10: 953-962.
    • (2007) Nat Neurosci , vol.10 , pp. 953-962
    • Dellisanti, C.D.1    Yao, Y.2    Stroud, J.C.3    Wang, Z.Z.4    Chen, L.5
  • 29
    • 13444271681 scopus 로고    scopus 로고
    • Refined structure of the nicotinic acetylcholine receptor at 4 Å resolution
    • Unwin N. Refined structure of the nicotinic acetylcholine receptor at 4 Å resolution. J Mol Biol 2005; 346: 967-989.
    • (2005) J Mol Biol , vol.346 , pp. 967-989
    • Unwin, N.1
  • 30
    • 41149168686 scopus 로고    scopus 로고
    • X-ray structure of a prokaryotic pentameric ligand-gated ion channel
    • Hilf RJC, Dutzler R. X-ray structure of a prokaryotic pentameric ligand-gated ion channel. Nature 2008; 452: 375-379.
    • (2008) Nature , vol.452 , pp. 375-379
    • Hilf, R.J.C.1    Dutzler, R.2
  • 32
    • 58149242730 scopus 로고    scopus 로고
    • Structure of a potentially open state of a proton-activated pentameric ligand-gated ion channel
    • Hilf RJC, Dutzler R. Structure of a potentially open state of a proton-activated pentameric ligand-gated ion channel. Nature 2009; 457: 115-118.
    • (2009) Nature , vol.457 , pp. 115-118
    • Hilf, R.J.C.1    Dutzler, R.2
  • 33
    • 77953709862 scopus 로고    scopus 로고
    • NMR structure of the transmembrane domain of the n-acetylcholine receptor β2 subunit
    • Bondarenko V, Tillman T, Xu Y, Tang P. NMR structure of the transmembrane domain of the n-acetylcholine receptor β2 subunit. Biochim Biophys Acta Biomembr 2010; 1798: 1608-1614.
    • (2010) Biochim Biophys Acta Biomembr , vol.1798 , pp. 1608-1614
    • Bondarenko, V.1    Tillman, T.2    Xu, Y.3    Tang, P.4
  • 34
    • 0037144124 scopus 로고    scopus 로고
    • A α1β3γ2 receptors determined by molecular modeling
    • A α1β3γ2 receptors determined by molecular modeling. Biochim Biophys Acta 2002; 1565: 91-96.
    • (2002) Biochim Biophys Acta , vol.1565 , pp. 91-96
    • Trudell, J.1
  • 36
    • 0037969585 scopus 로고    scopus 로고
    • 1 Subunit Pro174-Asp191 Segment Is Involved in GABA Binding and Channel Gating
    • 1 Subunit Pro174-Asp191 Segment Is Involved in GABA Binding and Channel Gating. J Biol Chem 2003; 278: 13166-13172.
    • (2003) J Biol Chem , vol.278 , pp. 13166-13172
    • Newell, J.G.1    Czajkowski, C.2
  • 37
    • 27544460357 scopus 로고    scopus 로고
    • A receptor extracellular and transmembrane domains: important insights in pharmacology and function
    • A receptor extracellular and transmembrane domains: important insights in pharmacology and function. Mol Pharmacol 2005; 68: 1291-1300.
    • (2005) Mol Pharmacol , vol.68 , pp. 1291-1300
    • Ernst, M.1    Bruckner, S.2    Boresch, S.3    Sieghart, W.4
  • 40
    • 34548283953 scopus 로고    scopus 로고
    • A receptor and docking studies with zolpidem: implications for selectivity
    • A receptor and docking studies with zolpidem: implications for selectivity. J Mol Graph Model 2007; 26: 537-545.
    • (2007) J Mol Graph Model , vol.26 , pp. 537-545
    • Ci, S.Q.1    Ren, T.R.2    Ma, C.X.3    Su, Z.G.4
  • 41
    • 43349104341 scopus 로고    scopus 로고
    • A receptor using molecular modeling
    • A receptor using molecular modeling. Protein J 2008; 27: 71-78.
    • (2008) Protein J , vol.27 , pp. 71-78
    • Ci, S.Q.1    Ren, T.R.2    Su, Z.G.3
  • 42
    • 70349967621 scopus 로고    scopus 로고
    • Modeling neuronal nicotinic and GABA receptors: important interface salt-links and protein dynamics
    • Law RJ, Lightstone FC. Modeling neuronal nicotinic and GABA receptors: important interface salt-links and protein dynamics. Biophys J 2009; 97: 1586-1594.
    • (2009) Biophys J , vol.97 , pp. 1586-1594
    • Law, R.J.1    Lightstone, F.C.2
  • 43
    • 1842475289 scopus 로고    scopus 로고
    • Nicotine and carbamylcholine binding to nicotinic acetylcholine receptors as studied in AChBP crystal structures
    • Celie PH, van Rossum-Fikkert SE, van Dijk WJ, Brejc K, Smit AB, Sixma TK. Nicotine and carbamylcholine binding to nicotinic acetylcholine receptors as studied in AChBP crystal structures. Neuron 2004; 41: 907-914.
    • (2004) Neuron , vol.41 , pp. 907-914
    • Celie, P.H.1    van Rossum-Fikkert, S.E.2    van Dijk, W.J.3    Brejc, K.4    Smit, A.B.5    Sixma, T.K.6
  • 45
    • 33745599329 scopus 로고    scopus 로고
    • Modeling the open and closed forms of GABAA receptor: analysis of ligand-receptor interactions for the GABA-binding site
    • Chupakhin VI, Palyulin VA, Zefirov NS. Modeling the open and closed forms of GABAA receptor: analysis of ligand-receptor interactions for the GABA-binding site. Dokl Biochem Biophys 2006; 408: 169-174.
    • (2006) Dokl Biochem Biophys , vol.408 , pp. 169-174
    • Chupakhin, V.I.1    Palyulin, V.A.2    Zefirov, N.S.3
  • 51
    • 27144473613 scopus 로고    scopus 로고
    • Structures of Aplysia AChBP complexes with nicotinic agonists and antagonists reveal distinctive binding interfaces and conformations
    • Hansen SB, Sulzenbacher G, Huxford T, Marchot P, Taylor P, Bourne Y. Structures of Aplysia AChBP complexes with nicotinic agonists and antagonists reveal distinctive binding interfaces and conformations. EMBO J 2005; 24: 3635-3646.
    • (2005) EMBO J , vol.24 , pp. 3635-3646
    • Hansen, S.B.1    Sulzenbacher, G.2    Huxford, T.3    Marchot, P.4    Taylor, P.5    Bourne, Y.6
  • 52
    • 38549097071 scopus 로고    scopus 로고
    • The universal protein resource (UniProt)
    • The Uniprot Consortium.
    • The Uniprot Consortium. The universal protein resource (UniProt). Nucleic Acids Res 2008; 36: D190-D195.
    • (2008) Nucleic Acids Res , vol.36
  • 53
    • 0036891560 scopus 로고    scopus 로고
    • The nicotinic receptor ligand binding domain
    • Sine SM. The nicotinic receptor ligand binding domain. J Neurobiol 2002; 53: 431-446.
    • (2002) J Neurobiol , vol.53 , pp. 431-446
    • Sine, S.M.1
  • 56
    • 0027136282 scopus 로고
    • Comparative protein modelling by satisfaction of spatial restraints
    • Sali A, Blundell TL. Comparative protein modelling by satisfaction of spatial restraints. J Mol Biol 1993; 234: 779-815.
    • (1993) J Mol Biol , vol.234 , pp. 779-815
    • Sali, A.1    Blundell, T.L.2
  • 57
    • 77956319507 scopus 로고    scopus 로고
    • New York, NY: Schrödinger, LLC.
    • Maestro, version 9.0. New York, NY: Schrödinger, LLC; 2009.
    • (2009) Maestro, version 9.0
  • 58
    • 77956895785 scopus 로고    scopus 로고
    • New York, NY: Schrödinger, LLC; Impact, version 5.5. New York, NY: Schrödinger, LLC; 2009. Prime, version 2.1. New York, NY: Schrödinger, LLC; 2009.
    • Schrödinger Suite 2009 Protein Preparation Wizard. Epik, version 2.0. New York, NY: Schrödinger, LLC; 2009. Impact, version 5.5. New York, NY: Schrödinger, LLC; 2009. Prime, version 2.1. New York, NY: Schrödinger, LLC; 2009.
    • (2009) Schrödinger Suite 2009 Protein Preparation Wizard. Epik, version 2.0
  • 59
    • 34548831934 scopus 로고    scopus 로고
    • Establishing an ion pair interaction in the homomeric ρ1 γ-aminobutyric acid type A receptor that contributes to the gating pathway
    • Wang J, Lester HA, Dougherty DA. Establishing an ion pair interaction in the homomeric ρ1 γ-aminobutyric acid type A receptor that contributes to the gating pathway. J Biol Chem 2007; 282: 26210-26216.
    • (2007) J Biol Chem , vol.282 , pp. 26210-26216
    • Wang, J.1    Lester, H.A.2    Dougherty, D.A.3
  • 62
    • 33749578940 scopus 로고    scopus 로고
    • Statistical potential for assessment and prediction of protein structures
    • Shen MY, Sali A. Statistical potential for assessment and prediction of protein structures. Protein Sci 2006; 15: 2507-2524.
    • (2006) Protein Sci , vol.15 , pp. 2507-2524
    • Shen, M.Y.1    Sali, A.2
  • 63
    • 0027490731 scopus 로고
    • Recognition of errors in three-dimensional structures of proteins
    • Sippl MJ. Recognition of errors in three-dimensional structures of proteins. Proteins 1993; 17: 355-362.
    • (1993) Proteins , vol.17 , pp. 355-362
    • Sippl, M.J.1
  • 64
    • 0029912748 scopus 로고    scopus 로고
    • Development and testing of the OPLS All-Atom force field on conformational energetics and properties of organic liquids
    • Jorgensen WL, Maxwell DS, Tirado-Rives J. Development and testing of the OPLS All-Atom force field on conformational energetics and properties of organic liquids. J Am Chem Soc 1996; 118: 11225-11236.
    • (1996) J Am Chem Soc , vol.118 , pp. 11225-11236
    • Jorgensen, W.L.1    Maxwell, D.S.2    Tirado-Rives, J.3
  • 65
    • 0035913529 scopus 로고    scopus 로고
    • Evaluation and reparametrization of the OPLS-AA force field for proteins via comparison with accurate quantum chemical calculations on peptides
    • Kaminski GA, Friesner RA, Tirado-Rives J, Jorgensen WL. Evaluation and reparametrization of the OPLS-AA force field for proteins via comparison with accurate quantum chemical calculations on peptides. J Phys Chem B 2001; 105: 6474-6487.
    • (2001) J Phys Chem B , vol.105 , pp. 6474-6487
    • Kaminski, G.A.1    Friesner, R.A.2    Tirado-Rives, J.3    Jorgensen, W.L.4
  • 66
    • 34547566446 scopus 로고    scopus 로고
    • ProSA-web: interactive web service for the recognition of errors in three-dimensional structures of proteins
    • Wiederstein M, Sippl MJ. ProSA-web: interactive web service for the recognition of errors in three-dimensional structures of proteins. Nucleic Acids Res 2007; 35: W407-W410.
    • (2007) Nucleic Acids Res , vol.35
    • Wiederstein, M.1    Sippl, M.J.2
  • 69
    • 0021871375 scopus 로고
    • A computational procedure for determining energetically favorable binding sites on biologically important macromolecules
    • Goodford PJ. A computational procedure for determining energetically favorable binding sites on biologically important macromolecules. J Med Chem 1985; 28: 849-857.
    • (1985) J Med Chem , vol.28 , pp. 849-857
    • Goodford, P.J.1
  • 70
    • 34250828731 scopus 로고    scopus 로고
    • Pinner, Middlesex, UK: Molecular Discovery, Ltd.
    • GRID, version 22a. Pinner, Middlesex, UK: Molecular Discovery, Ltd.; 2005.
    • (2005) GRID, version 22a
  • 71
    • 0342424187 scopus 로고    scopus 로고
    • Fast prediction and visualization of protein binding pockets with PASS
    • Brady GP, Jr., Stouten PF. Fast prediction and visualization of protein binding pockets with PASS. J Comput-Aided Mol Des 2000; 14: 383-401.
    • (2000) J Comput-Aided Mol Des , vol.14 , pp. 383-401
    • Brady Jr, G.P.1    Stouten, P.F.2
  • 72
    • 0031452190 scopus 로고    scopus 로고
    • Differences in agonist/antagonist binding affinity and receptor transduction using recombinant human γ-aminobutyric acid type A receptors
    • Ebert B, Thompson SA, Saounatsou K, McKernan R, Krogsgaard-Larsen P, Wafford KA. Differences in agonist/antagonist binding affinity and receptor transduction using recombinant human γ-aminobutyric acid type A receptors. Mol Pharmacol 1997; 52: 1150-1156.
    • (1997) Mol Pharmacol , vol.52 , pp. 1150-1156
    • Ebert, B.1    Thompson, S.A.2    Saounatsou, K.3    McKernan, R.4    Krogsgaard-Larsen, P.5    Wafford, K.A.6
  • 74
  • 75
    • 77950577346 scopus 로고    scopus 로고
    • New York, NY: Schrödinger, LLC.
    • MacroModel, version 9.7. New York, NY: Schrödinger, LLC; 2009.
    • (2009) MacroModel, version 9.7
  • 76
    • 77949825974 scopus 로고    scopus 로고
    • New York, NY: Schrödinger, LLC.
    • Glide, version 5.5. New York, NY: Schrödinger, LLC; 2009.
    • (2009) Glide, version 5.5
  • 79
  • 83
    • 0017882951 scopus 로고
    • Structure-activity studies on the inhibition of GABA binding to rat brain membranes by muscimol and related compounds
    • Krogsgaard-Larsen P, Johnston GAR. Structure-activity studies on the inhibition of GABA binding to rat brain membranes by muscimol and related compounds. J Neurochem 1978; 30: 1377-1382.
    • (1978) J Neurochem , vol.30 , pp. 1377-1382
    • Krogsgaard-Larsen, P.1    Johnston, G.A.R.2
  • 84
    • 67549125013 scopus 로고    scopus 로고
    • Allosteric activation mechanism of the cys-loop receptors
    • Chang Y, Wu W, Zhang J, Huang Y. Allosteric activation mechanism of the cys-loop receptors. Acta Pharmacol Sin 2009; 30: 663-672.
    • (2009) Acta Pharmacol Sin , vol.30 , pp. 663-672
    • Chang, Y.1    Wu, W.2    Zhang, J.3    Huang, Y.4
  • 85
    • 14844300820 scopus 로고    scopus 로고
    • Agonist-mediated conformational changes in acetylcholine-binding protein revealed by simulation and intrinsic tryptophan fluorescence
    • Gao F, Bren N, Burghardt TP, Hansen S, Henchman RH, Taylor P, McCammon JA, Sine SM. Agonist-mediated conformational changes in acetylcholine-binding protein revealed by simulation and intrinsic tryptophan fluorescence. J Biol Chem 2005; 280: 8443-8451.
    • (2005) J Biol Chem , vol.280 , pp. 8443-8451
    • Gao, F.1    Bren, N.2    Burghardt, T.P.3    Hansen, S.4    Henchman, R.H.5    Taylor, P.6    McCammon, J.A.7    Sine, S.M.8
  • 86
    • 0036304564 scopus 로고    scopus 로고
    • Activation of the nicotinic acetylcholine receptor involves a switch in conformation of the alpha subunits
    • Unwin N, Miyazawa A, Li J, Fujiyoshi Y. Activation of the nicotinic acetylcholine receptor involves a switch in conformation of the alpha subunits. J Mol Biol 2002; 319: 1165-1176.
    • (2002) J Mol Biol , vol.319 , pp. 1165-1176
    • Unwin, N.1    Miyazawa, A.2    Li, J.3    Fujiyoshi, Y.4
  • 87
    • 70350571641 scopus 로고    scopus 로고
    • Structural determinants for interaction of partial agonists with acetylcholine binding protein and neuronal α7 nicotinic acetylcholine receptor
    • Hibbs RE, Sulzenbacher G, Shi J, Talley TT, Conrod S, Kem WR, Taylor P, Marchot P, Bourne Y. Structural determinants for interaction of partial agonists with acetylcholine binding protein and neuronal α7 nicotinic acetylcholine receptor. EMBO J 2009; 28: 3040-3051.
    • (2009) EMBO J , vol.28 , pp. 3040-3051
    • Hibbs, R.E.1    Sulzenbacher, G.2    Shi, J.3    Talley, T.T.4    Conrod, S.5    Kem, W.R.6    Taylor, P.7    Marchot, P.8    Bourne, Y.9


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.