-
1
-
-
1042290495
-
Molecular interactions at the T cell-antigen-presenting cell interface
-
Gascoigne, N. R. and Zal, T. (2004) Molecular interactions at the T cell-antigen-presenting cell interface Curr. Opin. Immunol. 16, 114-119
-
(2004)
Curr. Opin. Immunol.
, vol.16
, pp. 114-119
-
-
Gascoigne, N.R.1
Zal, T.2
-
2
-
-
0034193568
-
Protein-protein interactions define specificity in signal transduction
-
Pawson, T. and Nash, P. (2000) Protein-protein interactions define specificity in signal transduction Genes Dev. 14, 1027-1047
-
(2000)
Genes Dev.
, vol.14
, pp. 1027-1047
-
-
Pawson, T.1
Nash, P.2
-
3
-
-
0036468365
-
Eukaryotic transcription factors
-
Warren, A. J. (2002) Eukaryotic transcription factors Curr. Opin. Struct. Biol. 12, 107-114
-
(2002)
Curr. Opin. Struct. Biol.
, vol.12
, pp. 107-114
-
-
Warren, A.J.1
-
4
-
-
27144530248
-
Towards a proteome-scale map of the human protein-protein interaction network
-
Rual, J. F., Venkatesan, K., Hao, T., Hirozane-Kishikawa, T., Dricot, A., Li, N., Berriz, G. F., Gibbons, F. D., Dreze, M., Ayivi-Guedehoussou, N., Klitgord, N., Simon, C., Boxem, M., Milstein, S., Rosenberg, J., Goldberg, D. S., Zhang, L. V., Wong, S. L., Franklin, G., Li, S., Albala, J. S., Lim, J., Fraughton, C., Llamosas, E., Cevik, S., Bex, C., Lamesch, P., Sikorski, R. S., Vandenhaute, J., Zoghbi, H. Y., Smolyar, A., Bosak, S., Sequerra, R., Doucette-Stamm, L., Cusick, M. E., Hill, D. E., Roth, F. P., and Vidal, M. (2005) Towards a proteome-scale map of the human protein-protein interaction network Nature 437, 1173-1178
-
(2005)
Nature
, vol.437
, pp. 1173-1178
-
-
Rual, J.F.1
Venkatesan, K.2
Hao, T.3
Hirozane-Kishikawa, T.4
Dricot, A.5
Li, N.6
Berriz, G.F.7
Gibbons, F.D.8
Dreze, M.9
Ayivi-Guedehoussou, N.10
Klitgord, N.11
Simon, C.12
Boxem, M.13
Milstein, S.14
Rosenberg, J.15
Goldberg, D.S.16
Zhang, L.V.17
Wong, S.L.18
Franklin, G.19
Li, S.20
Albala, J.S.21
Lim, J.22
Fraughton, C.23
Llamosas, E.24
Cevik, S.25
Bex, C.26
Lamesch, P.27
Sikorski, R.S.28
Vandenhaute, J.29
Zoghbi, H.Y.30
Smolyar, A.31
Bosak, S.32
Sequerra, R.33
Doucette-Stamm, L.34
Cusick, M.E.35
Hill, D.E.36
Roth, F.P.37
Vidal, M.38
more..
-
5
-
-
9144264169
-
A map of the interactome network of the metazoan C. elegans
-
Li, S., Armstrong, C. M., Bertin, N., Ge, H., Milstein, S., Boxem, M., Vidalain, P. O., Han, J. D., Chesneau, A., Hao, T., Goldberg, D. S., Li, N., Martinez, M., Rual, J. F., Lamesch, P., Xu, L., Tewari, M., Wong, S. L., Zhang, L. V., Berriz, G. F., Jacotot, L., Vaglio, P., Reboul, J., Hirozane-Kishikawa, T., Li, Q., Gabel, H. W., Elewa, A., Baumgartner, B., Rose, D. J., Yu, H., Bosak, S., Sequerra, R., Fraser, A., Mango, S. E., Saxton, W. M., Strome, S., Van Den Heuvel, S., Piano, F., Vandenhaute, J., Sardet, C., Gerstein, M., Doucette-Stamm, L., Gunsalus, K. C., Harper, J. W., Cusick, M. E., Roth, F. P., Hill, D. E., and Vidal, M. (2004) A map of the interactome network of the metazoan C. elegans Science 303, 540-543
-
(2004)
Science
, vol.303
, pp. 540-543
-
-
Li, S.1
Armstrong, C.M.2
Bertin, N.3
Ge, H.4
Milstein, S.5
Boxem, M.6
Vidalain, P.O.7
Han, J.D.8
Chesneau, A.9
Hao, T.10
Goldberg, D.S.11
Li, N.12
Martinez, M.13
Rual, J.F.14
Lamesch, P.15
Xu, L.16
Tewari, M.17
Wong, S.L.18
Zhang, L.V.19
Berriz, G.F.20
Jacotot, L.21
Vaglio, P.22
Reboul, J.23
Hirozane-Kishikawa, T.24
Li, Q.25
Gabel, H.W.26
Elewa, A.27
Baumgartner, B.28
Rose, D.J.29
Yu, H.30
Bosak, S.31
Sequerra, R.32
Fraser, A.33
Mango, S.E.34
Saxton, W.M.35
Strome, S.36
Van Den Heuvel, S.37
Piano, F.38
Vandenhaute, J.39
Sardet, C.40
Gerstein, M.41
Doucette-Stamm, L.42
Gunsalus, K.C.43
Harper, J.W.44
Cusick, M.E.45
Roth, F.P.46
Hill, D.E.47
Vidal, M.48
more..
-
6
-
-
12144289400
-
A physical and functional map of the human TNF-alpha/NF-kappa B signal transduction pathway
-
Bouwmeester, T., Bauch, A., Ruffner, H., Angrand, P. O., Bergamini, G., Croughton, K., Cruciat, C., Eberhard, D., Gagneur, J., Ghidelli, S., Hopf, C., Huhse, B., Mangano, R., Michon, A. M., Schirle, M., Schlegl, J., Schwab, M., Stein, M. A., Bauer, A., Casari, G., Drewes, G., Gavin, A. C., Jackson, D. B., Joberty, G., Neubauer, G., Rick, J., Kuster, B., and Superti-Furga, G. (2004) A physical and functional map of the human TNF-alpha/NF-kappa B signal transduction pathway Nat. Cell Biol. 6, 97-105
-
(2004)
Nat. Cell Biol.
, vol.6
, pp. 97-105
-
-
Bouwmeester, T.1
Bauch, A.2
Ruffner, H.3
Angrand, P.O.4
Bergamini, G.5
Croughton, K.6
Cruciat, C.7
Eberhard, D.8
Gagneur, J.9
Ghidelli, S.10
Hopf, C.11
Huhse, B.12
Mangano, R.13
Michon, A.M.14
Schirle, M.15
Schlegl, J.16
Schwab, M.17
Stein, M.A.18
Bauer, A.19
Casari, G.20
Drewes, G.21
Gavin, A.C.22
Jackson, D.B.23
Joberty, G.24
Neubauer, G.25
Rick, J.26
Kuster, B.27
Superti-Furga, G.28
more..
-
7
-
-
0345600247
-
A protein interaction map of Drosophila melanogaster
-
Giot, L., Bader, J. S., Brouwer, C., Chaudhuri, A., Kuang, B., Li, Y., Hao, Y. L., Ooi, C. E., Godwin, B., Vitols, E., Vijayadamodar, G., Pochart, P., Machineni, H., Welsh, M., Kong, Y., Zerhusen, B., Malcolm, R., Varrone, Z., Collis, A., Minto, M., Burgess, S., McDaniel, L., Stimpson, E., Spriggs, F., Williams, J., Neurath, K., Ioime, N., Agee, M., Voss, E., Furtak, K., Renzulli, R., Aanensen, N., Carrolla, S., Bickelhaupt, E., Lazovatsky, Y., DaSilva, A., Zhong, J., Stanyon, C. A., Finley, R. L., Jr., White, K. P., Braverman, M., Jarvie, T., Gold, S., Leach, M., Knight, J., Shimkets, R. A., McKenna, M. P., Chant, J., and Rothberg, J. M. (2003) A protein interaction map of Drosophila melanogaster Science 302, 1727-1736
-
(2003)
Science
, vol.302
, pp. 1727-1736
-
-
Giot, L.1
Bader, J.S.2
Brouwer, C.3
Chaudhuri, A.4
Kuang, B.5
Li, Y.6
Hao, Y.L.7
Ooi, C.E.8
Godwin, B.9
Vitols, E.10
Vijayadamodar, G.11
Pochart, P.12
MacHineni, H.13
Welsh, M.14
Kong, Y.15
Zerhusen, B.16
Malcolm, R.17
Varrone, Z.18
Collis, A.19
Minto, M.20
Burgess, S.21
McDaniel, L.22
Stimpson, E.23
Spriggs, F.24
Williams, J.25
Neurath, K.26
Ioime, N.27
Agee, M.28
Voss, E.29
Furtak, K.30
Renzulli, R.31
Aanensen, N.32
Carrolla, S.33
Bickelhaupt, E.34
Lazovatsky, Y.35
Dasilva, A.36
Zhong, J.37
Stanyon, C.A.38
Finley, Jr.R.L.39
White, K.P.40
Braverman, M.41
Jarvie, T.42
Gold, S.43
Leach, M.44
Knight, J.45
Shimkets, R.A.46
McKenna, M.P.47
Chant, J.48
Rothberg, J.M.49
more..
-
8
-
-
0034628508
-
A comprehensive analysis of protein-protein interactions in Saccharomyces cerevisiae
-
DOI 10.1038/35001009
-
Uetz, P., Giot, L., Cagney, G., Mansfield, T. A., Judson, R. S., Knight, J. R., Lockshon, D., Narayan, V., Srinivasan, M., Pochart, P., Qureshi-Emili, A., Li, Y., Godwin, B., Conover, D., Kalbfleisch, T., Vijayadamodar, G., Yang, M., Johnston, M., Fields, S., and Rothberg, J. M. (2000) A comprehensive analysis of protein-protein interactions in Saccharomyces cerevisiae Nature 403, 623-627 (Pubitemid 30103994)
-
(2000)
Nature
, vol.403
, Issue.6770
, pp. 623-627
-
-
Uetz, P.1
Glot, L.2
Cagney, G.3
Mansfield, T.A.4
Judson, R.S.5
Knight, J.R.6
Lockshon, D.7
Narayan, V.8
Srinivasan, M.9
Pochart, P.10
Qureshi-Emlli, A.11
Li, Y.12
Godwin, B.13
Conover, D.14
Kalbfleisch, T.15
Vijayadamodar, G.16
Yang, M.17
Johnston, M.18
Fields, S.19
Rothberg, J.M.20
more..
-
9
-
-
0035836765
-
A comprehensive two-hybrid analysis to explore the yeast protein interactome
-
Ito, T., Chiba, T., Ozawa, R., Yoshida, M., Hattori, M., and Sakaki, Y. (2001) A comprehensive two-hybrid analysis to explore the yeast protein interactome Proc. Natl. Acad. Sci. U.S.A. 98, 4569-4574
-
(2001)
Proc. Natl. Acad. Sci. U.S.A.
, vol.98
, pp. 4569-4574
-
-
Ito, T.1
Chiba, T.2
Ozawa, R.3
Yoshida, M.4
Hattori, M.5
Sakaki, Y.6
-
10
-
-
66349104770
-
PSI-2: Structural genomics to cover protein domain family space
-
Dessailly, B. H., Nair, R., Jaroszewski, L., Fajardo, J. E., Kouranov, A., Lee, D., Fiser, A., Godzik, A., Rost, B., and Orengo, C. (2009) PSI-2: structural genomics to cover protein domain family space Structure 17, 869-881
-
(2009)
Structure
, vol.17
, pp. 869-881
-
-
Dessailly, B.H.1
Nair, R.2
Jaroszewski, L.3
Fajardo, J.E.4
Kouranov, A.5
Lee, D.6
Fiser, A.7
Godzik, A.8
Rost, B.9
Orengo, C.10
-
11
-
-
0028916599
-
A hot spot of binding energy in a hormone-receptor interface
-
Clackson, T. and Wells, J. A. (1995) A hot spot of binding energy in a hormone-receptor interface Science 267, 383-386
-
(1995)
Science
, vol.267
, pp. 383-386
-
-
Clackson, T.1
Wells, J.A.2
-
12
-
-
0036469060
-
Unraveling hot spots in binding interfaces: Progress and challenges
-
DeLano, W. L. (2002) Unraveling hot spots in binding interfaces: progress and challenges Curr. Opin. Struct. Biol. 12, 14-20
-
(2002)
Curr. Opin. Struct. Biol.
, vol.12
, pp. 14-20
-
-
Delano, W.L.1
-
13
-
-
0034687780
-
Estimation of the hydrophobic effect in an antigen-antibody protein-protein interface
-
Sundberg, E. J., Urrutia, M., Braden, B. C., Isern, J., Tsuchiya, D., Fields, B. A., Malchiodi, E. L., Tormo, J., Schwarz, F. P., and Mariuzza, R. A. (2000) Estimation of the hydrophobic effect in an antigen-antibody protein-protein interface Biochemistry 39, 15375-15387
-
(2000)
Biochemistry
, vol.39
, pp. 15375-15387
-
-
Sundberg, E.J.1
Urrutia, M.2
Braden, B.C.3
Isern, J.4
Tsuchiya, D.5
Fields, B.A.6
Malchiodi, E.L.7
Tormo, J.8
Schwarz, F.P.9
Mariuzza, R.A.10
-
14
-
-
13844272064
-
Magnitude of the hydrophobic effect at central versus peripheral sites in protein-protein interfaces
-
Li, Y., Huang, Y., Swaminathan, C. P., Smith-Gill, S. J., and Mariuzza, R. A. (2005) Magnitude of the hydrophobic effect at central versus peripheral sites in protein-protein interfaces Structure (Cambridge) 13, 297-307
-
(2005)
Structure (Cambridge)
, vol.13
, pp. 297-307
-
-
Li, Y.1
Huang, Y.2
Swaminathan, C.P.3
Smith-Gill, S.J.4
Mariuzza, R.A.5
-
15
-
-
11844296052
-
The modular architecture of protein-protein binding interfaces
-
Reichmann, D., Rahat, O., Albeck, S., Meged, R., Dym, O., and Schreiber, G. (2005) The modular architecture of protein-protein binding interfaces Proc. Natl. Acad. Sci. U.S.A. 102, 57-62
-
(2005)
Proc. Natl. Acad. Sci. U.S.A.
, vol.102
, pp. 57-62
-
-
Reichmann, D.1
Rahat, O.2
Albeck, S.3
Meged, R.4
Dym, O.5
Schreiber, G.6
-
16
-
-
33846925964
-
The molecular architecture of protein-protein binding sites
-
Reichmann, D., Rahat, O., Cohen, M., Neuvirth, H., and Schreiber, G. (2007) The molecular architecture of protein-protein binding sites Curr. Opin. Struct. Biol. 17, 67-76
-
(2007)
Curr. Opin. Struct. Biol.
, vol.17
, pp. 67-76
-
-
Reichmann, D.1
Rahat, O.2
Cohen, M.3
Neuvirth, H.4
Schreiber, G.5
-
17
-
-
11844249426
-
Hot regions in protein - Protein interactions: The organization and contribution of structurally conserved hot spot residues
-
Keskin, O., Ma, B., and Nussinov, R. (2005) Hot regions in protein - protein interactions: the organization and contribution of structurally conserved hot spot residues J. Mol. Biol. 345, 1281-1294
-
(2005)
J. Mol. Biol.
, vol.345
, pp. 1281-1294
-
-
Keskin, O.1
Ma, B.2
Nussinov, R.3
-
18
-
-
22244465254
-
Protein-protein interactions: Organization, cooperativity and mapping in a bottom-up Systems Biology approach
-
Keskin, O., Ma, B., Rogale, K., Gunasekaran, K., and Nussinov, R. (2005) Protein-protein interactions: organization, cooperativity and mapping in a bottom-up Systems Biology approach Phys. Biol. 2, S24-S35
-
(2005)
Phys. Biol.
, vol.2
-
-
Keskin, O.1
Ma, B.2
Rogale, K.3
Gunasekaran, K.4
Nussinov, R.5
-
19
-
-
1842507022
-
A new, structurally nonredundant, diverse data set of protein-protein interfaces and its implications
-
Keskin, O., Tsai, C. J., Wolfson, H., and Nussinov, R. (2004) A new, structurally nonredundant, diverse data set of protein-protein interfaces and its implications Protein Sci. 13, 1043-1055
-
(2004)
Protein Sci.
, vol.13
, pp. 1043-1055
-
-
Keskin, O.1
Tsai, C.J.2
Wolfson, H.3
Nussinov, R.4
-
20
-
-
36749056244
-
Dissecting protein structure and function using directed evolution
-
Yuen, C. M. and Liu, D. R. (2007) Dissecting protein structure and function using directed evolution Nat. Methods 4, 995-997
-
(2007)
Nat. Methods
, vol.4
, pp. 995-997
-
-
Yuen, C.M.1
Liu, D.R.2
-
22
-
-
34648832245
-
Yeast surface display for protein engineering and characterization
-
Gai, S. A. and Wittrup, K. D. (2007) Yeast surface display for protein engineering and characterization Curr. Opin. Struct. Biol. 17, 467-473
-
(2007)
Curr. Opin. Struct. Biol.
, vol.17
, pp. 467-473
-
-
Gai, S.A.1
Wittrup, K.D.2
-
23
-
-
28844435898
-
Structural basis of affinity maturation and intramolecular cooperativity in a protein-protein interaction
-
Cho, S., Swaminathan, C. P., Yang, J., Kerzic, M. C., Guan, R., Kieke, M. C., Kranz, D. M., Mariuzza, R. A., and Sundberg, E. J. (2005) Structural basis of affinity maturation and intramolecular cooperativity in a protein-protein interaction Structure (Cambridge) 13, 1775-1787
-
(2005)
Structure (Cambridge)
, vol.13
, pp. 1775-1787
-
-
Cho, S.1
Swaminathan, C.P.2
Yang, J.3
Kerzic, M.C.4
Guan, R.5
Kieke, M.C.6
Kranz, D.M.7
Mariuzza, R.A.8
Sundberg, E.J.9
-
24
-
-
33745605781
-
Long-range cooperative binding effects in a T cell receptor variable domain
-
Moza, B., Buonpane, R. A., Zhu, P., Herfst, C. A., Rahman, A. K., McCormick, J. K., Kranz, D. M., and Sundberg, E. J. (2006) Long-range cooperative binding effects in a T cell receptor variable domain Proc. Natl. Acad. Sci. U.S.A. 103, 9867-9872
-
(2006)
Proc. Natl. Acad. Sci. U.S.A.
, vol.103
, pp. 9867-9872
-
-
Moza, B.1
Buonpane, R.A.2
Zhu, P.3
Herfst, C.A.4
Rahman, A.K.5
McCormick, J.K.6
Kranz, D.M.7
Sundberg, E.J.8
-
25
-
-
0346749508
-
Dissecting cooperative and additive binding energetics in the affinity maturation pathway of a protein-protein interface
-
Yang, J., Swaminathan, C. P., Huang, Y., Guan, R., Cho, S., Kieke, M. C., Kranz, D. M., Mariuzza, R. A., and Sundberg, E. J. (2003) Dissecting cooperative and additive binding energetics in the affinity maturation pathway of a protein-protein interface J. Biol. Chem. 278, 50412-50421
-
(2003)
J. Biol. Chem.
, vol.278
, pp. 50412-50421
-
-
Yang, J.1
Swaminathan, C.P.2
Huang, Y.3
Guan, R.4
Cho, S.5
Kieke, M.C.6
Kranz, D.M.7
Mariuzza, R.A.8
Sundberg, E.J.9
-
26
-
-
1342302339
-
Conformational changes associated with protein-protein interactions
-
Goh, C. S., Milburn, D., and Gerstein, M. (2004) Conformational changes associated with protein-protein interactions Curr. Opin. Struct. Biol. 14, 104-109
-
(2004)
Curr. Opin. Struct. Biol.
, vol.14
, pp. 104-109
-
-
Goh, C.S.1
Milburn, D.2
Gerstein, M.3
-
27
-
-
33644843079
-
Accounting for loop flexibility during protein-protein docking
-
Bastard, K., Prevost, C., and Zacharias, M. (2006) Accounting for loop flexibility during protein-protein docking Proteins 62, 956-969
-
(2006)
Proteins
, vol.62
, pp. 956-969
-
-
Bastard, K.1
Prevost, C.2
Zacharias, M.3
-
28
-
-
0037442962
-
HADDOCK: A protein-protein docking approach based on biochemical or biophysical information
-
Dominguez, C., Boelens, R., and Bonvin, A. M. (2003) HADDOCK: a protein-protein docking approach based on biochemical or biophysical information J. Am. Chem. Soc. 125, 1731-1737
-
(2003)
J. Am. Chem. Soc.
, vol.125
, pp. 1731-1737
-
-
Dominguez, C.1
Boelens, R.2
Bonvin, A.M.3
-
29
-
-
21644463278
-
Geometry-based flexible and symmetric protein docking
-
Schneidman-Duhovny, D., Inbar, Y., Nussinov, R., and Wolfson, H. J. (2005) Geometry-based flexible and symmetric protein docking Proteins 60, 224-231
-
(2005)
Proteins
, vol.60
, pp. 224-231
-
-
Schneidman-Duhovny, D.1
Inbar, Y.2
Nussinov, R.3
Wolfson, H.J.4
-
30
-
-
15244355250
-
The relationship between the flexibility of proteins and their conformational states on forming protein-protein complexes with an application to protein-protein docking
-
Smith, G. R., Sternberg, M. J., and Bates, P. A. (2005) The relationship between the flexibility of proteins and their conformational states on forming protein-protein complexes with an application to protein-protein docking J. Mol. Biol. 347, 1077-1101
-
(2005)
J. Mol. Biol.
, vol.347
, pp. 1077-1101
-
-
Smith, G.R.1
Sternberg, M.J.2
Bates, P.A.3
-
31
-
-
34548861782
-
Protein-protein docking with backbone flexibility
-
Wang, C., Bradley, P., and Baker, D. (2007) Protein-protein docking with backbone flexibility J. Mol. Biol. 373, 503-519
-
(2007)
J. Mol. Biol.
, vol.373
, pp. 503-519
-
-
Wang, C.1
Bradley, P.2
Baker, D.3
-
32
-
-
0037742533
-
Hot spots in Tcf4 for the interaction with beta-catenin
-
Fasolini, M., Wu, X., Flocco, M., Trosset, J. Y., Oppermann, U., and Knapp, S. (2003) Hot spots in Tcf4 for the interaction with beta-catenin J. Biol. Chem. 278, 21092-21098
-
(2003)
J. Biol. Chem.
, vol.278
, pp. 21092-21098
-
-
Fasolini, M.1
Wu, X.2
Flocco, M.3
Trosset, J.Y.4
Oppermann, U.5
Knapp, S.6
-
33
-
-
0033613207
-
Mapping of a DNA binding region of the PI-sceI homing endonuclease by affinity cleavage and alanine-scanning mutagenesis
-
Hu, D., Crist, M., Duan, X., and Gimble, F. S. (1999) Mapping of a DNA binding region of the PI-sceI homing endonuclease by affinity cleavage and alanine-scanning mutagenesis Biochemistry 38, 12621-12628
-
(1999)
Biochemistry
, vol.38
, pp. 12621-12628
-
-
Hu, D.1
Crist, M.2
Duan, X.3
Gimble, F.S.4
-
34
-
-
0035823601
-
Role of the T cell receptor ligand affinity in T cell activation by bacterial superantigens
-
Andersen, P. S., Geisler, C., Buus, S., Mariuzza, R. A., and Karjalainen, K. (2001) Role of the T cell receptor ligand affinity in T cell activation by bacterial superantigens J. Biol. Chem. 276, 33452-33457
-
(2001)
J. Biol. Chem.
, vol.276
, pp. 33452-33457
-
-
Andersen, P.S.1
Geisler, C.2
Buus, S.3
Mariuzza, R.A.4
Karjalainen, K.5
-
35
-
-
0031059866
-
Processing X-ray diffraction data collected in oscillation mode
-
Otwinowski, Z. and Minor, W. (1997) Processing X-ray diffraction data collected in oscillation mode Methods Enzymol. 276, 307-326
-
(1997)
Methods Enzymol.
, vol.276
, pp. 307-326
-
-
Otwinowski, Z.1
Minor, W.2
-
36
-
-
0028103275
-
The CCP4 suite: Programs for protein crystallography
-
CCP4 ()
-
CCP4 (1994) The CCP4 suite: programs for protein crystallography Acta Crystallogr., Sect. D: Biol. Crystallogr. 50, 760-763
-
(1994)
Acta Crystallogr., Sect. D: Biol. Crystallogr.
, vol.50
, pp. 760-763
-
-
-
37
-
-
3543012707
-
Crystallography and NMR system: A new software suite for macromolecular structure determination
-
Brunger, A. T., Adams, P. D., Clore, G. M., DeLano, W. L., Gros, P., Grosse-Kunstleve, R. W., Jiang, J. S., Kuszewski, J., Nilges, M., Pannu, N. S., Read, R. J., Rice, L. M., Simonson, T., and Warren, G. L. (1998) Crystallography and NMR system: a new software suite for macromolecular structure determination Acta Crystallogr. D54, 905-921
-
(1998)
Acta Crystallogr.
, vol.54
, pp. 905-921
-
-
Brunger, A.T.1
Adams, P.D.2
Clore, G.M.3
Delano, W.L.4
Gros, P.5
Grosse-Kunstleve, R.W.6
Jiang, J.S.7
Kuszewski, J.8
Nilges, M.9
Pannu, N.S.10
Read, R.J.11
Rice, L.M.12
Simonson, T.13
Warren, G.L.14
-
38
-
-
0032790081
-
XtalView/Xfit - A versatile program for manipulating atomic coordinates and electron density
-
McRee, D. E. (1999) XtalView/Xfit-a versatile program for manipulating atomic coordinates and electron density J. Struct. Biol. 125, 156-165
-
(1999)
J. Struct. Biol.
, vol.125
, pp. 156-165
-
-
McRee, D.E.1
-
39
-
-
0034610977
-
Mapping the energy of superantigen Staphylococcus enterotoxin C3 recognition of an alpha/beta T cell receptor using alanine scanning mutagenesis
-
Churchill, H. R., Andersen, P. S., Parke, E. A., Mariuzza, R. A., and Kranz, D. M. (2000) Mapping the energy of superantigen Staphylococcus enterotoxin C3 recognition of an alpha/beta T cell receptor using alanine scanning mutagenesis J. Exp. Med. 191, 835-846
-
(2000)
J. Exp. Med.
, vol.191
, pp. 835-846
-
-
Churchill, H.R.1
Andersen, P.S.2
Parke, E.A.3
Mariuzza, R.A.4
Kranz, D.M.5
-
40
-
-
0029985104
-
Crystal structure of a T-cell receptor beta-chain complexed with a superantigen
-
Fields, B. A., Malchiodi, E. L., Li, H., Ysern, X., Stauffacher, C. V., Schlievert, P. M., Karjalainen, K., and Mariuzza, R. A. (1996) Crystal structure of a T-cell receptor beta-chain complexed with a superantigen Nature 384, 188-192
-
(1996)
Nature
, vol.384
, pp. 188-192
-
-
Fields, B.A.1
Malchiodi, E.L.2
Li, H.3
Ysern, X.4
Stauffacher, C.V.5
Schlievert, P.M.6
Karjalainen, K.7
Mariuzza, R.A.8
-
41
-
-
0035853281
-
High affinity T cell receptors from yeast display libraries block T cell activation by superantigens
-
Kieke, M. C., Sundberg, E., Shusta, E. V., Mariuzza, R. A., Wittrup, K. D., and Kranz, D. M. (2001) High affinity T cell receptors from yeast display libraries block T cell activation by superantigens J. Mol. Biol. 307, 1305-1315
-
(2001)
J. Mol. Biol.
, vol.307
, pp. 1305-1315
-
-
Kieke, M.C.1
Sundberg, E.2
Shusta, E.V.3
Mariuzza, R.A.4
Wittrup, K.D.5
Kranz, D.M.6
-
42
-
-
37049178741
-
The staphylococcal enterotoxins and their relatives
-
Marrack, P. and Kappler, J. (1990) The staphylococcal enterotoxins and their relatives Science 248, 705-711
-
(1990)
Science
, vol.248
, pp. 705-711
-
-
Marrack, P.1
Kappler, J.2
-
43
-
-
0034780632
-
Toxic shock syndrome and bacterial superantigens: An update
-
McCormick, J. K., Yarwood, J. M., and Schlievert, P. M. (2001) Toxic shock syndrome and bacterial superantigens: an update Annu. Rev. Microbiol. 55, 77-104
-
(2001)
Annu. Rev. Microbiol.
, vol.55
, pp. 77-104
-
-
McCormick, J.K.1
Yarwood, J.M.2
Schlievert, P.M.3
-
44
-
-
0036467503
-
So many ways of getting in the way: Diversity in the molecular architecture of superantigen-dependent T-cell signaling complexes
-
Sundberg, E. J., Li, Y., and Mariuzza, R. A. (2002) So many ways of getting in the way: diversity in the molecular architecture of superantigen-dependent T-cell signaling complexes Curr. Opin. Immunol. 14, 36-44
-
(2002)
Curr. Opin. Immunol.
, vol.14
, pp. 36-44
-
-
Sundberg, E.J.1
Li, Y.2
Mariuzza, R.A.3
-
45
-
-
0037151107
-
Zinc-mediated dimerization and its effect on activity and conformation of staphylococcal enterotoxin type C
-
Chi, Y. I., Sadler, I., Jablonski, L. M., Callantine, S. D., Deobald, C. F., Stauffacher, C. V., and Bohach, G. A. (2002) Zinc-mediated dimerization and its effect on activity and conformation of staphylococcal enterotoxin type C J. Biol. Chem. 277, 22839-22846
-
(2002)
J. Biol. Chem.
, vol.277
, pp. 22839-22846
-
-
Chi, Y.I.1
Sadler, I.2
Jablonski, L.M.3
Callantine, S.D.4
Deobald, C.F.5
Stauffacher, C.V.6
Bohach, G.A.7
-
46
-
-
0041333127
-
Structural, energetic and functional analysis of a protein-protein interface at distinct stages of affinity maturation
-
Sundberg, E. J., Andersen, P. S., Schlievert, P. M., Karjalainen, K., and Mariuzza, R. A. (2003) Structural, energetic and functional analysis of a protein-protein interface at distinct stages of affinity maturation Structure 11, 1151-1161
-
(2003)
Structure
, vol.11
, pp. 1151-1161
-
-
Sundberg, E.J.1
Andersen, P.S.2
Schlievert, P.M.3
Karjalainen, K.4
Mariuzza, R.A.5
-
48
-
-
0026684671
-
Use of liquid hydrocarbon and amide transfer data to estimate contributions to thermodynamic functions of protein folding from the removal of nonpolar and polar surface from water
-
Spolar, R. S., Livingstone, J. R., and Record, M. T., Jr. (1992) Use of liquid hydrocarbon and amide transfer data to estimate contributions to thermodynamic functions of protein folding from the removal of nonpolar and polar surface from water Biochemistry 31, 3947-3955
-
(1992)
Biochemistry
, vol.31
, pp. 3947-3955
-
-
Spolar, R.S.1
Livingstone, J.R.2
Record, Jr.M.T.3
-
49
-
-
0028820703
-
Denaturant m values and heat capacity changes: Relation to changes in accessible surface areas of protein unfolding
-
Myers, J. K., Pace, C. N., and Scholtz, J. M. (1995) Denaturant m values and heat capacity changes: relation to changes in accessible surface areas of protein unfolding Protein Sci. 4, 2138-2148
-
(1995)
Protein Sci.
, vol.4
, pp. 2138-2148
-
-
Myers, J.K.1
Pace, C.N.2
Scholtz, J.M.3
-
51
-
-
0026756702
-
Thermodynamics of structural stability and cooperative folding behavior in proteins
-
Murphy, K. P. and Freire, E. (1992) Thermodynamics of structural stability and cooperative folding behavior in proteins Adv. Protein Chem. 43, 313-361
-
(1992)
Adv. Protein Chem.
, vol.43
, pp. 313-361
-
-
Murphy, K.P.1
Freire, E.2
-
52
-
-
0002638463
-
Heat capacity and entropy changes in processes involving proteins
-
Sturtevant, J. M. (1977) Heat capacity and entropy changes in processes involving proteins Proc. Natl. Acad. Sci. U.S.A. 74, 2236-2240
-
(1977)
Proc. Natl. Acad. Sci. U.S.A.
, vol.74
, pp. 2236-2240
-
-
Sturtevant, J.M.1
-
53
-
-
1042298819
-
Heat capacity effects of water molecules and ions at a protein-DNA interface
-
Bergqvist, S., Williams, M. A., O'Brien, R., and Ladbury, J. E. (2004) Heat capacity effects of water molecules and ions at a protein-DNA interface J. Mol. Biol. 336, 829-842
-
(2004)
J. Mol. Biol.
, vol.336
, pp. 829-842
-
-
Bergqvist, S.1
Williams, M.A.2
O'Brien, R.3
Ladbury, J.E.4
-
54
-
-
0029860343
-
Water-mediated protein-DNA interactions: The relationship of thermodynamics to structural detail
-
Morton, C. J. and Ladbury, J. E. (1996) Water-mediated protein-DNA interactions: the relationship of thermodynamics to structural detail Protein Sci. 5, 2115-2118
-
(1996)
Protein Sci.
, vol.5
, pp. 2115-2118
-
-
Morton, C.J.1
Ladbury, J.E.2
-
55
-
-
0028283502
-
A thermodynamic study of the trp repressor-operator interaction
-
Ladbury, J. E., Wright, J. G., Sturtevant, J. M., and Sigler, P. B. (1994) A thermodynamic study of the trp repressor-operator interaction J. Mol. Biol. 238, 669-681
-
(1994)
J. Mol. Biol.
, vol.238
, pp. 669-681
-
-
Ladbury, J.E.1
Wright, J.G.2
Sturtevant, J.M.3
Sigler, P.B.4
-
56
-
-
36749075510
-
Incorporating biochemical information and backbone flexibility in RosettaDock for CAPRI rounds 6-12
-
Chaudhury, S., Sircar, A., Sivasubramanian, A., Berrondo, M., and Gray, J. J. (2007) Incorporating biochemical information and backbone flexibility in RosettaDock for CAPRI rounds 6-12 Proteins 69, 793-800
-
(2007)
Proteins
, vol.69
, pp. 793-800
-
-
Chaudhury, S.1
Sircar, A.2
Sivasubramanian, A.3
Berrondo, M.4
Gray, J.J.5
-
57
-
-
0038161052
-
Protein-protein docking with simultaneous optimization of rigid-body displacement and side-chain conformations
-
Gray, J. J., Moughon, S., Wang, C., Schueler-Furman, O., Kuhlman, B., Rohl, C. A., and Baker, D. (2003) Protein-protein docking with simultaneous optimization of rigid-body displacement and side-chain conformations J. Mol. Biol. 331, 281-299
-
(2003)
J. Mol. Biol.
, vol.331
, pp. 281-299
-
-
Gray, J.J.1
Moughon, S.2
Wang, C.3
Schueler-Furman, O.4
Kuhlman, B.5
Rohl, C.A.6
Baker, D.7
-
58
-
-
0036291145
-
Predicting changes in the stability of proteins and protein complexes: A study of more than 1000 mutations
-
Guerois, R., Nielsen, J. E., and Serrano, L. (2002) Predicting changes in the stability of proteins and protein complexes: a study of more than 1000 mutations J. Mol. Biol. 320, 369-387
-
(2002)
J. Mol. Biol.
, vol.320
, pp. 369-387
-
-
Guerois, R.1
Nielsen, J.E.2
Serrano, L.3
-
59
-
-
58149247893
-
Predicting free energy changes using structural ensembles
-
Benedix, A., Becker, C. M., de Groot, B. L., Caflisch, A., and Bockmann, R. A. (2009) Predicting free energy changes using structural ensembles Nat. Methods 6, 3-4
-
(2009)
Nat. Methods
, vol.6
, pp. 3-4
-
-
Benedix, A.1
Becker, C.M.2
De Groot, B.L.3
Caflisch, A.4
Bockmann, R.A.5
-
60
-
-
65249187243
-
MM-PBSA captures key role of intercalating water molecules at a protein-protein interface
-
Wong, S., Amaro, R. E., and McCammon, J. A. (2009) MM-PBSA captures key role of intercalating water molecules at a protein-protein interface J. Chem. Theory Comput. 5, 422-429
-
(2009)
J. Chem. Theory Comput.
, vol.5
, pp. 422-429
-
-
Wong, S.1
Amaro, R.E.2
McCammon, J.A.3
|