-
1
-
-
0038237369
-
Taking geometry to its edge: Fast unbound rigid (and hingebent) docking
-
Schneidman-Duhovny D, Inbar Y, Polak V, Shatsky M, Halperin I, Benyamini H, Barzilai A, Dror O, Haspel N, Nussinov R, Wolfson HJ. Taking geometry to its edge: fast unbound rigid (and hingebent) docking. Proteins 2003;52:107-112.
-
(2003)
Proteins
, vol.52
, pp. 107-112
-
-
Schneidman-Duhovny, D.1
Inbar, Y.2
Polak, V.3
Shatsky, M.4
Halperin, I.5
Benyamini, H.6
Barzilai, A.7
Dror, O.8
Haspel, N.9
Nussinov, R.10
Wolfson, H.J.11
-
2
-
-
21644438254
-
Approaching the CAPRI challenge with an efficient geometry-based docking
-
Inbar Y, Schneidman-Duhovny D, Halperin I, Oron A, Nussinov R, Wolfson HJ. Approaching the CAPRI challenge with an efficient geometry-based docking. Proteins 2005;60:217-223.
-
(2005)
Proteins
, vol.60
, pp. 217-223
-
-
Inbar, Y.1
Schneidman-Duhovny, D.2
Halperin, I.3
Oron, A.4
Nussinov, R.5
Wolfson, H.J.6
-
3
-
-
84956979675
-
Efficient unbound docking of rigid molecules
-
Guigo R, Gusfield D, editors. Rome: Springer-Verlag
-
Duhovny D, Nussinov R, Wolfson HJ. Efficient unbound docking of rigid molecules. In Guigo R, Gusfield D, editors. Workshop on algorithms in bioinformatics. Vol. 2452. Rome: Springer-Verlag; 2002. p 185-200.
-
(2002)
Workshop on Algorithms in Bioinformatics
, vol.2452
, pp. 185-200
-
-
Duhovny, D.1
Nussinov, R.2
Wolfson, H.J.3
-
4
-
-
0029089732
-
Molecular surface complementarity at protein-protein interfaces: The critical role played by surface normals at well placed, sparse points in docking
-
Norel R, Lin SL, Wolfson HJ, Nussinov R. Molecular surface complementarity at protein-protein interfaces: the critical role played by surface normals at well placed, sparse points in docking. J Mol Biol 1995;252:263-273.
-
(1995)
J Mol Biol
, vol.252
, pp. 263-273
-
-
Norel, R.1
Lin, S.L.2
Wolfson, H.J.3
Nussinov, R.4
-
6
-
-
0032466036
-
A method for biomolecular structural recognition and docking allowing conformational flexibility
-
Sandak B, Nussinov R, Wolfson HJ. A method for biomolecular structural recognition and docking allowing conformational flexibility. J Comp Biol 1998;5:631-654.
-
(1998)
J Comp Biol
, vol.5
, pp. 631-654
-
-
Sandak, B.1
Nussinov, R.2
Wolfson, H.J.3
-
8
-
-
0026572775
-
Molecular surface recognition: Determination of geometric fit between protein and their ligands by correlation techniques
-
Katchalski-Katzir E, Shariv I, Eisenstein M, Friesem AA, Aflalo C, Vakser IA. Molecular surface recognition: determination of geometric fit between protein and their ligands by correlation techniques. Proc Natl Acad Sci USA 1992;89:2195-2199.
-
(1992)
Proc Natl Acad Sci USA
, vol.89
, pp. 2195-2199
-
-
Katchalski-Katzir, E.1
Shariv, I.2
Eisenstein, M.3
Friesem, A.A.4
Aflalo, C.5
Vakser, I.A.6
-
9
-
-
1842861590
-
Prediction of protein-protein interactions: The CAPRI experiment, its evaluation and implications
-
Méndez R, Wodak SJ. Prediction of protein-protein interactions: the CAPRI experiment, its evaluation and implications. Curr Opin Struct Biol 2004;14:242-249.
-
(2004)
Curr Opin Struct Biol
, vol.14
, pp. 242-249
-
-
Méndez, R.1
Wodak, S.J.2
-
10
-
-
0038021436
-
Assessment of blind predictions of protein-protein interactions: Current status of docking methods
-
Méndez R, Leplae R, De Maria L, Wodak SJ. Assessment of blind predictions of protein-protein interactions: current status of docking methods. Proteins 2003;52:51-67.
-
(2003)
Proteins
, vol.52
, pp. 51-67
-
-
Méndez, R.1
Leplae, R.2
De Maria, L.3
Wodak, S.J.4
-
11
-
-
0037478850
-
HPr kinase/phosphorylase, the sensor enzyme of catabolite repression in Gram-positive bacteria:structural aspects of the enzyme and the complex with its protein substrate
-
Nessler S, Fieulaine S, Poncet S, Galinier A, Deutscher J, Janin J. HPr kinase/phosphorylase, the sensor enzyme of catabolite repression in Gram-positive bacteria:structural aspects of the enzyme and the complex with its protein substrate. J Bacteriol 2003;185: 4003-4010.
-
(2003)
J Bacteriol
, vol.185
, pp. 4003-4010
-
-
Nessler, S.1
Fieulaine, S.2
Poncet, S.3
Galinier, A.4
Deutscher, J.5
Janin, J.6
-
12
-
-
0031566966
-
Modeling supra-molecular helices: Extension of the molecular surface recognition algorithm and application to the protein coat of the tobacco mosaic virus
-
Eisenstein M, Shariv I, Koren G, Friesem AA, Katchalski-Katzir E. Modeling supra-molecular helices: extension of the molecular surface recognition algorithm and application to the protein coat of the tobacco mosaic virus. J Mol Biol 1997;266:135-143.
-
(1997)
J Mol Biol
, vol.266
, pp. 135-143
-
-
Eisenstein, M.1
Shariv, I.2
Koren, G.3
Friesem, A.A.4
Katchalski-Katzir, E.5
-
13
-
-
0344980718
-
Construction of molecular assemblies via docking: Modeling of tetramers with D2 symmetry
-
Berchanski A, Eisenstein M. Construction of molecular assemblies via docking: modeling of tetramers with D2 symmetry. Proteins 2003;53:817-829.
-
(2003)
Proteins
, vol.53
, pp. 817-829
-
-
Berchanski, A.1
Eisenstein, M.2
-
14
-
-
0019397313
-
Generalizing the Hough transform to detect arbitrary shapes
-
Ballard DH. Generalizing the Hough transform to detect arbitrary shapes. Pattern Recognit 1981;13:111-122.
-
(1981)
Pattern Recognit
, vol.13
, pp. 111-122
-
-
Ballard, D.H.1
-
15
-
-
0026301147
-
Generalizing the generalized Hough transform
-
Wolfson HJ. Generalizing the generalized Hough transform. Pattern Recognit Lett 1991;12:565-573.
-
(1991)
Pattern Recognit Lett
, vol.12
, pp. 565-573
-
-
Wolfson, H.J.1
-
16
-
-
0036149480
-
Soft protein-protein docking in internal coordinates
-
Fernandez-Recio J, Totrov M, Abagyan R. Soft protein-protein docking in internal coordinates. Protein Sci 2002;11:280-291.
-
(2002)
Protein Sci
, vol.11
, pp. 280-291
-
-
Fernandez-Recio, J.1
Totrov, M.2
Abagyan, R.3
-
17
-
-
0038161052
-
Protein-protein docking with simultaneous optimization of rigid-body displacement and side-chain conformations
-
Gray JJ, Moughan S, Schueler-Furman O, Kuhlman B, Rohl CA, Baker D. Protein-protein docking with simultaneous optimization of rigid-body displacement and side-chain conformations. J Mol Biol 2003;331:281-299.
-
(2003)
J Mol Biol
, vol.331
, pp. 281-299
-
-
Gray, J.J.1
Moughan, S.2
Schueler-Furman, O.3
Kuhlman, B.4
Rohl, C.A.5
Baker, D.6
-
19
-
-
0027976930
-
Molecular surface representation by sparse critical points
-
Lin SL, Nussinov R, Fischer D, Wolfson HJ. Molecular surface representation by sparse critical points. Proteins 1994;18:94-101.
-
(1994)
Proteins
, vol.18
, pp. 94-101
-
-
Lin, S.L.1
Nussinov, R.2
Fischer, D.3
Wolfson, H.J.4
-
21
-
-
2442510419
-
BioInfo3D: A suite of tools for structural bioinformatics
-
Shatsky M, Dror O, Schneidman-Duhovny D, Nussinov R, Wolfson HJ. BioInfo3D: a suite of tools for structural bioinformatics. Nucleic Acids Res 2004;32:W503-W507.
-
(2004)
Nucleic Acids Res
, vol.32
-
-
Shatsky, M.1
Dror, O.2
Schneidman-Duhovny, D.3
Nussinov, R.4
Wolfson, H.J.5
-
22
-
-
17644378441
-
Structure of the native and inactive LicT PRD from B. subtilis
-
Graille M, Zhou CZ, Receveur V, Collinet B, Declerck N, van Tilbeurgh H. Structure of the native and inactive LicT PRD from B. subtilis. J Biol Chem 2005;280:14780-14789.
-
(2005)
J Biol Chem
, vol.280
, pp. 14780-14789
-
-
Graille, M.1
Zhou, C.Z.2
Receveur, V.3
Collinet, B.4
Declerck, N.5
Van Tilbeurgh, H.6
-
23
-
-
1842526097
-
Structure of a flavivirus envelope glycoprotein in its low-ph-induced membrane fusion conformation
-
Bressanelli S, Stiasny K, Allison SL, Stura EA, Duquerroy S, Lescar J, Heinz FX, Rey FA. Structure of a flavivirus envelope glycoprotein in its low-ph-induced membrane fusion conformation. EMBO J 2004;23:728-738.
-
(2004)
EMBO J
, vol.23
, pp. 728-738
-
-
Bressanelli, S.1
Stiasny, K.2
Allison, S.L.3
Stura, E.A.4
Duquerroy, S.5
Lescar, J.6
Heinz, F.X.7
Rey, F.A.8
-
24
-
-
19944407103
-
The structural basis of the thermostability of SP1, a novel plant (Populus tremula) boiling stable protein
-
Dgany O, Gonzalez A, Sofer O, Wang W, Zolotnitsky G, Wolf A, Shoham Y, Altman A, Wolf SG, Shoseyov O, Almog O. The structural basis of the thermostability of SP1, a novel plant (Populus tremula) boiling stable protein. J Biol Chem 2004;279: 51516-51523.
-
(2004)
J Biol Chem
, vol.279
, pp. 51516-51523
-
-
Dgany, O.1
Gonzalez, A.2
Sofer, O.3
Wang, W.4
Zolotnitsky, G.5
Wolf, A.6
Shoham, Y.7
Altman, A.8
Wolf, S.G.9
Shoseyov, O.10
Almog, O.11
|