메뉴 건너뛰기




Volumn 7, Issue 5, 2010, Pages 1545-1560

Virtual screening of selective multitarget kinase inhibitors by combinatorial support vector machines

Author keywords

Anticancer; computer aided drug design; high throughput screening; kinase inhibitor; multitarget; support vector machines; virtual screening

Indexed keywords

ANTINEOPLASTIC AGENT; CYCLIN DEPENDENT KINASE 1; CYCLIN DEPENDENT KINASE 2; DUAL PHOSPHOTRANSFERASE INHIBITOR; EPIDERMAL GROWTH FACTOR RECEPTOR; FIBROBLAST GROWTH FACTOR RECEPTOR; GLYCOGEN SYNTHASE KINASE 3; PHOSPHOTRANSFERASE; PHOSPHOTRANSFERASE INHIBITOR; PLATELET DERIVED GROWTH FACTOR RECEPTOR; PROTEIN KINASE LCK; PROTEIN TYROSINE KINASE; UNCLASSIFIED DRUG; VASCULOTROPIN RECEPTOR; ZINC;

EID: 77957730447     PISSN: 15438384     EISSN: 15438392     Source Type: Journal    
DOI: 10.1021/mp100179t     Document Type: Article
Times cited : (64)

References (85)
  • 1
    • 33745075558 scopus 로고    scopus 로고
    • Multiple signaling pathways must be targeted to overcome drug resistance in cell lines derived from melanoma metastases
    • Smalley, K. S.; Haass, N. K.; Brafford, P. A.; Lioni, M.; Flaherty, K. T.; Herlyn, M. Multiple signaling pathways must be targeted to overcome drug resistance in cell lines derived from melanoma metastases Mol. Cancer Ther. 2006, 5 (5) 1136-44
    • (2006) Mol. Cancer Ther. , vol.5 , Issue.5 , pp. 1136-44
    • Smalley, K.S.1    Haass, N.K.2    Brafford, P.A.3    Lioni, M.4    Flaherty, K.T.5    Herlyn, M.6
  • 2
    • 0034785443 scopus 로고    scopus 로고
    • Identifying regulatory networks by combinatorial analysis of promoter elements
    • Pilpel, Y.; Sudarsanam, P.; Church, G. M. Identifying regulatory networks by combinatorial analysis of promoter elements Nat. Genet. 2001, 29 (2) 153-9
    • (2001) Nat. Genet. , vol.29 , Issue.2 , pp. 153-9
    • Pilpel, Y.1    Sudarsanam, P.2    Church, G.M.3
  • 3
    • 4344682660 scopus 로고    scopus 로고
    • Crosstalk of oncogenic and prostanoid signaling pathways
    • Muller, R. Crosstalk of oncogenic and prostanoid signaling pathways J. Cancer Res. Clin. Oncol. 2004, 130 (8) 429-44
    • (2004) J. Cancer Res. Clin. Oncol. , vol.130 , Issue.8 , pp. 429-44
    • Muller, R.1
  • 4
    • 33846552656 scopus 로고    scopus 로고
    • Escape from HER-family tyrosine kinase inhibitor therapy by the kinase-inactive HER3
    • Sergina, N. V.; Rausch, M.; Wang, D.; Blair, J.; Hann, B.; Shokat, K. M.; Moasser, M. M. Escape from HER-family tyrosine kinase inhibitor therapy by the kinase-inactive HER3 Nature 2007, 445 (7126) 437-41
    • (2007) Nature , vol.445 , Issue.7126 , pp. 437-41
    • Sergina, N.V.1    Rausch, M.2    Wang, D.3    Blair, J.4    Hann, B.5    Shokat, K.M.6    Moasser, M.M.7
  • 5
    • 33644545381 scopus 로고    scopus 로고
    • Validating matrix metalloproteinases as drug targets and anti-targets for cancer therapy
    • Overall, C. M.; Kleifeld, O. Validating matrix metalloproteinases as drug targets and anti-targets for cancer therapy Nat. Rev. Cancer 2006, 6, 227-39
    • (2006) Nat. Rev. Cancer , vol.6 , pp. 227-39
    • Overall, C.M.1    Kleifeld, O.2
  • 6
    • 34247480545 scopus 로고    scopus 로고
    • Molecular mechanisms of cardiotoxicity of tyrosine kinase inhibition
    • Force, T.; Krause, D. S.; Van Etten, R. A. Molecular mechanisms of cardiotoxicity of tyrosine kinase inhibition Nat. Rev. Cancer 2007, 7 (5) 332-44
    • (2007) Nat. Rev. Cancer , vol.7 , Issue.5 , pp. 332-44
    • Force, T.1    Krause, D.S.2    Van Etten, R.A.3
  • 8
    • 0029028067 scopus 로고
    • Potential mechanism for sustained antiretroviral efficacy of AZT-3TC combination therapy
    • Larder, B. A.; Kemp, S. D.; Harrigan, P. R. Potential mechanism for sustained antiretroviral efficacy of AZT-3TC combination therapy Science 1995, 269 (5224) 696-9
    • (1995) Science , vol.269 , Issue.5224 , pp. 696-9
    • Larder, B.A.1    Kemp, S.D.2    Harrigan, P.R.3
  • 9
    • 58149380196 scopus 로고    scopus 로고
    • Recent advances in the development of multi-kinase inhibitors
    • Krug, M.; Hilgeroth, A. Recent advances in the development of multi-kinase inhibitors Mini-Rev. Med. Chem. 2008, 8 (13) 1312-27
    • (2008) Mini-Rev. Med. Chem. , vol.8 , Issue.13 , pp. 1312-27
    • Krug, M.1    Hilgeroth, A.2
  • 10
    • 34548843943 scopus 로고    scopus 로고
    • A comparison of physicochemical property profiles of marketed oral drugs and orally bioavailable anti-cancer protein kinase inhibitors in clinical development
    • Gill, A. L.; Verdonk, M.; Boyle, R. G.; Taylor, R. A comparison of physicochemical property profiles of marketed oral drugs and orally bioavailable anti-cancer protein kinase inhibitors in clinical development Curr. Top. Med. Chem. 2007, 7 (14) 1408-22
    • (2007) Curr. Top. Med. Chem. , vol.7 , Issue.14 , pp. 1408-22
    • Gill, A.L.1    Verdonk, M.2    Boyle, R.G.3    Taylor, R.4
  • 11
    • 11144323163 scopus 로고    scopus 로고
    • Virtual screening of chemical libraries
    • Shoichet, B. K. Virtual screening of chemical libraries Nature 2004, 432 (7019) 862-5
    • (2004) Nature , vol.432 , Issue.7019 , pp. 862-5
    • Shoichet, B.K.1
  • 13
    • 47349107115 scopus 로고    scopus 로고
    • Evaluation of virtual screening performance of support vector machines trained by sparsely distributed active compounds
    • Ma, X. H.; Wang, R.; Yang, S. Y.; Li, Z. R.; Xue, Y.; Wei, Y. C.; Low, B. C.; Chen, Y. Z. Evaluation of virtual screening performance of support vector machines trained by sparsely distributed active compounds J. Chem. Inf. Model. 2008, 48 (6) 1227-37
    • (2008) J. Chem. Inf. Model. , vol.48 , Issue.6 , pp. 1227-37
    • Ma, X.H.1    Wang, R.2    Yang, S.Y.3    Li, Z.R.4    Xue, Y.5    Wei, Y.C.6    Low, B.C.7    Chen, Y.Z.8
  • 14
    • 44949229188 scopus 로고    scopus 로고
    • Development and experimental validation of a docking strategy for the generation of kinase-targeted libraries
    • Gozalbes, R.; Simon, L.; Froloff, N.; Sartori, E.; Monteils, C.; Baudelle, R. Development and experimental validation of a docking strategy for the generation of kinase-targeted libraries J. Med. Chem. 2008, 51 (11) 3124-32
    • (2008) J. Med. Chem. , vol.51 , Issue.11 , pp. 3124-32
    • Gozalbes, R.1    Simon, L.2    Froloff, N.3    Sartori, E.4    Monteils, C.5    Baudelle, R.6
  • 16
    • 58149114911 scopus 로고    scopus 로고
    • Kinase-Targeted Library Design through the Application of the PharmPrint Methodology
    • Deanda, F.; Stewart, E. L.; Reno, M. J.; Drewry, D. H. Kinase-Targeted Library Design through the Application of the PharmPrint Methodology J. Chem. Inf. Model. 2008, 48 (12) 2395-403
    • (2008) J. Chem. Inf. Model. , vol.48 , Issue.12 , pp. 2395-403
    • Deanda, F.1    Stewart, E.L.2    Reno, M.J.3    Drewry, D.H.4
  • 17
    • 20444489197 scopus 로고    scopus 로고
    • Classifying "kinase inhibitor-likeness" by using machine-learning methods
    • Briem, H.; Gunther, J. Classifying "kinase inhibitor-likeness" by using machine-learning methods ChemBioChem 2005, 6 (3) 558-66
    • (2005) ChemBioChem , vol.6 , Issue.3 , pp. 558-66
    • Briem, H.1    Gunther, J.2
  • 18
    • 45749146280 scopus 로고    scopus 로고
    • Discovery of novel small-molecule inhibitors of human epidermal growth factor receptor-2: Combined ligand and target-based approach
    • Gundla, R.; Kazemi, R.; Sanam, R.; Muttineni, R.; Sarma, J. A.; Dayam, R.; Neamati, N. Discovery of novel small-molecule inhibitors of human epidermal growth factor receptor-2: combined ligand and target-based approach J. Med. Chem. 2008, 51 (12) 3367-77
    • (2008) J. Med. Chem. , vol.51 , Issue.12 , pp. 3367-77
    • Gundla, R.1    Kazemi, R.2    Sanam, R.3    Muttineni, R.4    Sarma, J.A.5    Dayam, R.6    Neamati, N.7
  • 19
    • 58749107670 scopus 로고    scopus 로고
    • Unified QSAR approach to antimicrobials. 4. Multi-target QSAR modeling and comparative multi-distance study of the giant components of antiviral drug-drug complex networks
    • Prado-Prado, F. J.; de la Vega, O. M.; Uriarte, E.; Ubeira, F. M.; Chou, K. C.; Gonzalez-Diaz, H. Unified QSAR approach to antimicrobials. 4. Multi-target QSAR modeling and comparative multi-distance study of the giant components of antiviral drug-drug complex networks Bioorg. Med. Chem. 2009, 17 (2) 569-75
    • (2009) Bioorg. Med. Chem. , vol.17 , Issue.2 , pp. 569-75
    • Prado-Prado, F.J.1    De La Vega, O.M.2    Uriarte, E.3    Ubeira, F.M.4    Chou, K.C.5    Gonzalez-Diaz, H.6
  • 20
    • 56049119878 scopus 로고    scopus 로고
    • In silico drug profiling of the human kinome based on a molecular marker for cross reactivity
    • Zhang, X.; Fernandez, A. In silico drug profiling of the human kinome based on a molecular marker for cross reactivity Mol. Pharmaceutics 2008, 5 (5) 728-38
    • (2008) Mol. Pharmaceutics , vol.5 , Issue.5 , pp. 728-38
    • Zhang, X.1    Fernandez, A.2
  • 21
    • 43049157546 scopus 로고    scopus 로고
    • A support vector machines approach for virtual screening of active compounds of single and multiple mechanisms from large libraries at an improved hit-rate and enrichment factor
    • Han, L. Y.; Ma, X. H.; Lin, H. H.; Jia, J.; Zhu, F.; Xue, Y.; Li, Z. R.; Cao, Z. W.; Ji, Z. L.; Chen, Y. Z. A support vector machines approach for virtual screening of active compounds of single and multiple mechanisms from large libraries at an improved hit-rate and enrichment factor J. Mol. Graphics Model. 2008, 26 (8) 1276-86
    • (2008) J. Mol. Graphics Model. , vol.26 , Issue.8 , pp. 1276-86
    • Han, L.Y.1    Ma, X.H.2    Lin, H.H.3    Jia, J.4    Zhu, F.5    Xue, Y.6    Li, Z.R.7    Cao, Z.W.8    Ji, Z.L.9    Chen, Y.Z.10
  • 24
    • 21644442451 scopus 로고    scopus 로고
    • Recent developments related to the EGFR as a target for cancer chemotherapy
    • Speake, G.; Holloway, B.; Costello, G. Recent developments related to the EGFR as a target for cancer chemotherapy Curr. Opin. Pharmacol. 2005, 5 (4) 343-9
    • (2005) Curr. Opin. Pharmacol. , vol.5 , Issue.4 , pp. 343-9
    • Speake, G.1    Holloway, B.2    Costello, G.3
  • 25
    • 34547922452 scopus 로고    scopus 로고
    • Targeting the function of the HER2 oncogene in human cancer therapeutics
    • Moasser, M. M. Targeting the function of the HER2 oncogene in human cancer therapeutics Oncogene 2007, 26 (46) 6577-92
    • (2007) Oncogene , vol.26 , Issue.46 , pp. 6577-92
    • Moasser, M.M.1
  • 26
    • 34548850080 scopus 로고    scopus 로고
    • Molecular design and clinical development of VEGFR kinase inhibitors
    • Zhong, H.; Bowen, J. P. Molecular design and clinical development of VEGFR kinase inhibitors Curr. Top. Med. Chem. 2007, 7 (14) 1379-93
    • (2007) Curr. Top. Med. Chem. , vol.7 , Issue.14 , pp. 1379-93
    • Zhong, H.1    Bowen, J.P.2
  • 27
    • 33847355253 scopus 로고    scopus 로고
    • The platelet-derived growth factor receptor as a therapeutic target
    • Lewis, N. L. The platelet-derived growth factor receptor as a therapeutic target Curr. Oncol. Rep. 2007, 9 (2) 89-95
    • (2007) Curr. Oncol. Rep. , vol.9 , Issue.2 , pp. 89-95
    • Lewis, N.L.1
  • 28
    • 34447253095 scopus 로고    scopus 로고
    • Fibroblast growth factors/fibroblast growth factor receptors as targets for the development of anti-angiogenesis strategies
    • Rusnati, M.; Presta, M. Fibroblast growth factors/fibroblast growth factor receptors as targets for the development of anti-angiogenesis strategies Curr. Pharm. Des. 2007, 13 (20) 2025-44
    • (2007) Curr. Pharm. Des. , vol.13 , Issue.20 , pp. 2025-44
    • Rusnati, M.1    Presta, M.2
  • 29
    • 45849109148 scopus 로고    scopus 로고
    • SRC family kinases as potential therapeutic targets for malignancies and immunological disorders
    • Benati, D.; Baldari, C. T. SRC family kinases as potential therapeutic targets for malignancies and immunological disorders Curr. Med. Chem. 2008, 15 (12) 1154-65
    • (2008) Curr. Med. Chem. , vol.15 , Issue.12 , pp. 1154-65
    • Benati, D.1    Baldari, C.T.2
  • 30
    • 33644830944 scopus 로고    scopus 로고
    • Targeting the cell cycle: A new approach to cancer therapy
    • Schwartz, G. K.; Shah, M. A. Targeting the cell cycle: a new approach to cancer therapy J. Clin. Oncol. 2005, 23 (36) 9408-21
    • (2005) J. Clin. Oncol. , vol.23 , Issue.36 , pp. 9408-21
    • Schwartz, G.K.1    Shah, M.A.2
  • 31
    • 46749128127 scopus 로고    scopus 로고
    • Glycogen synthase kinase-3 (GSK-3) inhibitors reach the clinic
    • Medina, M.; Castro, A. Glycogen synthase kinase-3 (GSK-3) inhibitors reach the clinic Curr. Opin. Drug Discovery Dev. 2008, 11 (4) 533-43
    • (2008) Curr. Opin. Drug Discovery Dev. , vol.11 , Issue.4 , pp. 533-43
    • Medina, M.1    Castro, A.2
  • 33
    • 33750991346 scopus 로고    scopus 로고
    • Benchmarking sets for molecular docking
    • Huang, N.; Shoichet, B. K.; Irwin, J. J. Benchmarking sets for molecular docking J. Med. Chem. 2006, 49 (23) 6789-801
    • (2006) J. Med. Chem. , vol.49 , Issue.23 , pp. 6789-801
    • Huang, N.1    Shoichet, B.K.2    Irwin, J.J.3
  • 35
    • 77952756796 scopus 로고    scopus 로고
    • Classification and Virtual Screening of Androgen Receptor Antagonists
    • Li, J.; Gramatica, P. Classification and Virtual Screening of Androgen Receptor Antagonists J. Chem. Inf. Model. 2010, 50, 861-74
    • (2010) J. Chem. Inf. Model. , vol.50 , pp. 861-74
    • Li, J.1    Gramatica, P.2
  • 36
    • 33846161653 scopus 로고    scopus 로고
    • Virtual screening for PPAR modulators using a probabilistic neural network
    • Derksen, S.; Rau, O.; Schneider, P.; Schubert-Zsilavecz, M.; Schneider, G. Virtual screening for PPAR modulators using a probabilistic neural network ChemMedChem 2006, 1 (12) 1346-50
    • (2006) ChemMedChem , vol.1 , Issue.12 , pp. 1346-50
    • Derksen, S.1    Rau, O.2    Schneider, P.3    Schubert-Zsilavecz, M.4    Schneider, G.5
  • 37
    • 13844312649 scopus 로고    scopus 로고
    • ZINC-a free database of commercially available compounds for virtual screening
    • Irwin, J. J.; Shoichet, B. K. ZINC-a free database of commercially available compounds for virtual screening J. Chem. Inf. Model. 2005, 45 (1) 177-82
    • (2005) J. Chem. Inf. Model. , vol.45 , Issue.1 , pp. 177-82
    • Irwin, J.J.1    Shoichet, B.K.2
  • 38
    • 1642323740 scopus 로고    scopus 로고
    • Protein kinase inhibitors: Insights into drug design from structure
    • Noble, M. E.; Endicott, J. A.; Johnson, L. N. Protein kinase inhibitors: insights into drug design from structure Science 2004, 303 (5665) 1800-5
    • (2004) Science , vol.303 , Issue.5665 , pp. 1800-5
    • Noble, M.E.1    Endicott, J.A.2    Johnson, L.N.3
  • 39
    • 0141727550 scopus 로고    scopus 로고
    • Design of EGFR kinase inhibitors: A ligand-based approach and its confirmation with structure-based studies
    • Vema, A.; Panigrahi, S. K.; Rambabu, G.; Gopalakrishnan, B.; Sarma, J. A.; Desiraju, G. R. Design of EGFR kinase inhibitors: a ligand-based approach and its confirmation with structure-based studies Bioorg. Med. Chem. 2003, 11 (21) 4643-53
    • (2003) Bioorg. Med. Chem. , vol.11 , Issue.21 , pp. 4643-53
    • Vema, A.1    Panigrahi, S.K.2    Rambabu, G.3    Gopalakrishnan, B.4    Sarma, J.A.5    Desiraju, G.R.6
  • 40
    • 33947594733 scopus 로고    scopus 로고
    • Pharmacophore modeling and in silico screening for new KDR kinase inhibitors
    • Yu, H.; Wang, Z.; Zhang, L.; Zhang, J.; Huang, Q. Pharmacophore modeling and in silico screening for new KDR kinase inhibitors Bioorg. Med. Chem. Lett. 2007, 17 (8) 2126-33
    • (2007) Bioorg. Med. Chem. Lett. , vol.17 , Issue.8 , pp. 2126-33
    • Yu, H.1    Wang, Z.2    Zhang, L.3    Zhang, J.4    Huang, Q.5
  • 46
    • 2942521736 scopus 로고    scopus 로고
    • Benzamides and benzamidines as specific inhibitors of epidermal growth factor receptor and v-Src protein tyros ine kinases
    • Asano, T.; Yoshikawa, T.; Usui, T.; Yamamoto, H.; Yamamoto, Y.; Uehara, Y.; Nakamura, H. Benzamides and benzamidines as specific inhibitors of epidermal growth factor receptor and v-Src protein tyros ine kinases Bioorg. Med. Chem. 2004, 12 (13) 3529-42
    • (2004) Bioorg. Med. Chem. , vol.12 , Issue.13 , pp. 3529-42
    • Asano, T.1    Yoshikawa, T.2    Usui, T.3    Yamamoto, H.4    Yamamoto, Y.5    Uehara, Y.6    Nakamura, H.7
  • 47
    • 38749091306 scopus 로고    scopus 로고
    • 2D Autocorrelation, CoMFA, and CoMSIA modeling of protein tyrosine kinases' inhibition by substituted pyrido[2,3-d]pyrimidine derivatives
    • Caballero, J.; Fernandez, M.; Saavedra, M.; Gonzalez-Nilo, F. D. 2D Autocorrelation, CoMFA, and CoMSIA modeling of protein tyrosine kinases' inhibition by substituted pyrido[2,3-d]pyrimidine derivatives Bioorg. Med. Chem. 2008, 16 (2) 810-21
    • (2008) Bioorg. Med. Chem. , vol.16 , Issue.2 , pp. 810-21
    • Caballero, J.1    Fernandez, M.2    Saavedra, M.3    Gonzalez-Nilo, F.D.4
  • 48
    • 33846108633 scopus 로고    scopus 로고
    • BindingDB: A web-accessible database of experimentally determined protein-ligand binding affinities
    • Liu, T.; Lin, Y.; Wen, X.; Jorissen, R. N.; Gilson, M. K. BindingDB: a web-accessible database of experimentally determined protein-ligand binding affinities Nucleic Acids Res. 2007, 35 (Database issue) D198-201
    • (2007) Nucleic Acids Res. , vol.35 , Issue.DATABASE ISSUE , pp. 198-201
    • Liu, T.1    Lin, Y.2    Wen, X.3    Jorissen, R.N.4    Gilson, M.K.5
  • 49
    • 0042202919 scopus 로고    scopus 로고
    • Chemography: The art of navigating in chemical space
    • Oprea, T. I.; Gottfries, J. Chemography: the art of navigating in chemical space J. Comb. Chem 2001, 3 (2) 157-66
    • (2001) J. Comb. Chem , vol.3 , Issue.2 , pp. 157-66
    • Oprea, T.I.1    Gottfries, J.2
  • 50
    • 34247194965 scopus 로고    scopus 로고
    • Virtual Exploration of the Chemical Universe up to 11 Atoms of C, N, O, F: Assembly of 26.4 Million Structures (110.9 Million Stereoisomers) and Analysis for New Ring Systems, Stereochemistry, Physicochemical Properties, Compound Classes, and Drug Discovery
    • Fink, T.; Reymond, J.-L. Virtual Exploration of the Chemical Universe up to 11 Atoms of C, N, O, F: Assembly of 26.4 Million Structures (110.9 Million Stereoisomers) and Analysis for New Ring Systems, Stereochemistry, Physicochemical Properties, Compound Classes, and Drug Discovery J. Chem. Inf. Model. 2007, 47 (2) 342-53
    • (2007) J. Chem. Inf. Model. , vol.47 , Issue.2 , pp. 342-53
    • Fink, T.1    Reymond, J.-L.2
  • 52
    • 33244482848 scopus 로고    scopus 로고
    • Enrichment of high-throughput screening data with increasing levels of noise using support vector machines, recursive partitioning, and laplacian-modified naive bayesian classifiers
    • Glick, M.; Jenkins, J. L.; Nettles, J. H.; Hitchings, H.; Davies, J. W. Enrichment of high-throughput screening data with increasing levels of noise using support vector machines, recursive partitioning, and laplacian-modified naive bayesian classifiers J. Chem. Inf. Model. 2006, 46 (1) 193-200
    • (2006) J. Chem. Inf. Model. , vol.46 , Issue.1 , pp. 193-200
    • Glick, M.1    Jenkins, J.L.2    Nettles, J.H.3    Hitchings, H.4    Davies, J.W.5
  • 53
    • 4444273205 scopus 로고    scopus 로고
    • Assessment of prediction confidence and domain extrapolation of two structure-activity relationship models for predicting estrogen receptor binding activity
    • Tong, W.; Xie, Q.; Hong, H.; Shi, L.; Fang, H.; Perkins, R. Assessment of prediction confidence and domain extrapolation of two structure-activity relationship models for predicting estrogen receptor binding activity Environ. Health Perspect. 2004, 112 (12) 1249-1254
    • (2004) Environ. Health Perspect. , vol.112 , Issue.12 , pp. 1249-1254
    • Tong, W.1    Xie, Q.2    Hong, H.3    Shi, L.4    Fang, H.5    Perkins, R.6
  • 54
    • 34247644786 scopus 로고    scopus 로고
    • Assessing potency of c-Jun N-terminal kinase 3 (JNK3) inhibitors using 2D molecular descriptors and binary QSAR methodology
    • Ijjaali, I.; Petitet, F.; Dubus, E.; Barberan, O.; Michel, A. Assessing potency of c-Jun N-terminal kinase 3 (JNK3) inhibitors using 2D molecular descriptors and binary QSAR methodology Bioorg. Med. Chem. 2007, 15 (12) 4256-64
    • (2007) Bioorg. Med. Chem. , vol.15 , Issue.12 , pp. 4256-64
    • Ijjaali, I.1    Petitet, F.2    Dubus, E.3    Barberan, O.4    Michel, A.5
  • 55
    • 4043091303 scopus 로고    scopus 로고
    • Prediction of P-glycoprotein substrates by a support vector machine approach
    • Xue, Y.; Yap, C. W.; Sun, L. Z.; Cao, Z. W.; Wang, J. F.; Chen, Y. Z. Prediction of P-glycoprotein substrates by a support vector machine approach J. Chem. Inf. Comput. Sci. 2004, 44 (4) 1497-505
    • (2004) J. Chem. Inf. Comput. Sci. , vol.44 , Issue.4 , pp. 1497-505
    • Xue, Y.1    Yap, C.W.2    Sun, L.Z.3    Cao, Z.W.4    Wang, J.F.5    Chen, Y.Z.6
  • 57
    • 10244252786 scopus 로고    scopus 로고
    • Systematic benchmarking of microarray data classification: Assessing the role of non-linearity and dimensionality reduction
    • Pochet, N.; De Smet, F.; Suykens, J. A.; De Moor, B. L. Systematic benchmarking of microarray data classification: assessing the role of non-linearity and dimensionality reduction Bioinformatics 2004, 20, 3185-95
    • (2004) Bioinformatics , vol.20 , pp. 3185-95
    • Pochet, N.1    De Smet, F.2    Suykens, J.A.3    De Moor, B.L.4
  • 58
    • 27544442586 scopus 로고    scopus 로고
    • Analysis of recursive gene selection approaches from microarray data
    • Li, F.; Yang, Y. Analysis of recursive gene selection approaches from microarray data Bioinformatics 2005, 21, 3741-3747
    • (2005) Bioinformatics , vol.21 , pp. 3741-3747
    • Li, F.1    Yang, Y.2
  • 59
    • 33845870927 scopus 로고    scopus 로고
    • In silico prediction of pregnane X receptor activators by machine learning approaches
    • Ung, C. Y.; Li, H.; Yap, C. W.; Chen, Y. Z. In silico prediction of pregnane X receptor activators by machine learning approaches Mol. Pharmacol. 2007, 71 (1) 158-68
    • (2007) Mol. Pharmacol. , vol.71 , Issue.1 , pp. 158-68
    • Ung, C.Y.1    Li, H.2    Yap, C.W.3    Chen, Y.Z.4
  • 62
    • 66249088724 scopus 로고    scopus 로고
    • Comparative Analysis of Machine Learning Methods in Ligand Based Virtual Screening of Large Compound Libraries
    • Ma, X. H.; Jia, J.; Zhu, F.; Xue, Y.; Li, Z. R.; Chen, Y. Z. Comparative Analysis of Machine Learning Methods in Ligand Based Virtual Screening of Large Compound Libraries Comb. Chem. High Throughput Screen. 2009, 12 (4) 344-57
    • (2009) Comb. Chem. High Throughput Screen. , vol.12 , Issue.4 , pp. 344-57
    • Ma, X.H.1    Jia, J.2    Zhu, F.3    Xue, Y.4    Li, Z.R.5    Chen, Y.Z.6
  • 63
    • 34247343346 scopus 로고    scopus 로고
    • Surflex-Dock 2.1: Robust performance from ligand energetic modeling, ring flexibility, and knowledge-based search
    • Jain, A. N. Surflex-Dock 2.1: robust performance from ligand energetic modeling, ring flexibility, and knowledge-based search J. Comput.-Aided Mol. Des. 2007, 21 (5) 281-306
    • (2007) J. Comput.-Aided Mol. Des. , vol.21 , Issue.5 , pp. 281-306
    • Jain, A.N.1
  • 64
    • 33750991346 scopus 로고    scopus 로고
    • Benchmarking sets for molecular docking
    • Huang, N.; Shoichet, B. K.; Irwin, J. J. Benchmarking sets for molecular docking J. Med. Chem. 2006, 49 (23) 6789-801
    • (2006) J. Med. Chem. , vol.49 , Issue.23 , pp. 6789-801
    • Huang, N.1    Shoichet, B.K.2    Irwin, J.J.3
  • 65
    • 33745595051 scopus 로고    scopus 로고
    • Minimizing false positives in kinase virtual screens
    • Perola, E. Minimizing false positives in kinase virtual screens Proteins 2006, 64 (2) 422-35
    • (2006) Proteins , vol.64 , Issue.2 , pp. 422-35
    • Perola, E.1
  • 66
    • 41549114720 scopus 로고    scopus 로고
    • Maximum common binding modes (MCBM): Consensus docking scoring using multiple ligand information and interaction fingerprints
    • Renner, S.; Derksen, S.; Radestock, S.; Morchen, F. Maximum common binding modes (MCBM): consensus docking scoring using multiple ligand information and interaction fingerprints J. Chem. Inf. Model. 2008, 48 (2) 319-32
    • (2008) J. Chem. Inf. Model. , vol.48 , Issue.2 , pp. 319-32
    • Renner, S.1    Derksen, S.2    Radestock, S.3    Morchen, F.4
  • 67
    • 70349373859 scopus 로고    scopus 로고
    • Combining docking with pharmacophore filtering for improved virtual screening
    • Peach, M. L.; Nicklaus, M. C. Combining docking with pharmacophore filtering for improved virtual screening J. Cheminf. 2009, 1 (1) 6
    • (2009) J. Cheminf. , vol.1 , Issue.1 , pp. 6
    • Peach, M.L.1    Nicklaus, M.C.2
  • 68
    • 34248995307 scopus 로고    scopus 로고
    • Vascular endothelial growth factor (VEGF) in autoimmune diseases
    • Carvalho, J. F.; Blank, M.; Shoenfeld, Y. Vascular endothelial growth factor (VEGF) in autoimmune diseases J. Clin. Immunol. 2007, 27 (3) 246-56
    • (2007) J. Clin. Immunol. , vol.27 , Issue.3 , pp. 246-56
    • Carvalho, J.F.1    Blank, M.2    Shoenfeld, Y.3
  • 70
    • 0026341684 scopus 로고
    • Platelet-derived growth factors and heparin-binding (fibroblast) growth factors in the synovial tissue pathology of rheumatoid arthritis
    • Remmers, E. F.; Sano, H.; Wilder, R. L. Platelet-derived growth factors and heparin-binding (fibroblast) growth factors in the synovial tissue pathology of rheumatoid arthritis Semin. Arthritis Rheum. 1991, 21 (3) 191-9
    • (1991) Semin. Arthritis Rheum. , vol.21 , Issue.3 , pp. 191-9
    • Remmers, E.F.1    Sano, H.2    Wilder, R.L.3
  • 71
    • 49649092618 scopus 로고    scopus 로고
    • Small molecule inhibitors of Lck: The search for specificity within a kinase family
    • Meyn, M. A.; Smithgall, T. E. Small molecule inhibitors of Lck: the search for specificity within a kinase family Mini-Rev. Med. Chem. 2008, 8 (6) 628-37
    • (2008) Mini-Rev. Med. Chem. , vol.8 , Issue.6 , pp. 628-37
    • Meyn, M.A.1    Smithgall, T.E.2
  • 72
    • 44149090296 scopus 로고    scopus 로고
    • Role of platelet-derived growth factors in physiology and medicine
    • Andrae, J.; Gallini, R.; Betsholtz, C. Role of platelet-derived growth factors in physiology and medicine Genes Dev. 2008, 22 (10) 1276-312
    • (2008) Genes Dev. , vol.22 , Issue.10 , pp. 1276-312
    • Andrae, J.1    Gallini, R.2    Betsholtz, C.3
  • 73
    • 33746802496 scopus 로고    scopus 로고
    • Inhibition of fibroblast growth factor receptor signaling attenuates atherosclerosis in apolipoprotein E-deficient mice
    • Raj, T.; Kanellakis, P.; Pomilio, G.; Jennings, G.; Bobik, A.; Agrotis, A. Inhibition of fibroblast growth factor receptor signaling attenuates atherosclerosis in apolipoprotein E-deficient mice Arterioscler. Thromb. Vasc. Biol. 2006, 26 (8) 1845-51
    • (2006) Arterioscler. Thromb. Vasc. Biol. , vol.26 , Issue.8 , pp. 1845-51
    • Raj, T.1    Kanellakis, P.2    Pomilio, G.3    Jennings, G.4    Bobik, A.5    Agrotis, A.6
  • 74
    • 0033787348 scopus 로고    scopus 로고
    • Cyclin-dependent kinase and protein kinase C inhibitors: A novel class of antineoplastic agents in clinical development
    • Kaubisch, A.; Schwartz, G. K. Cyclin-dependent kinase and protein kinase C inhibitors: a novel class of antineoplastic agents in clinical development Cancer J. 2000, 6 (4) 192-212
    • (2000) Cancer J. , vol.6 , Issue.4 , pp. 192-212
    • Kaubisch, A.1    Schwartz, G.K.2
  • 75
    • 10744228214 scopus 로고    scopus 로고
    • Synthesis and biological evaluation of novel macrocyclic bis-7-azaindolylmaleimides as potent and highly selective glycogen synthase kinase-3 beta (GSK-3 beta) inhibitors
    • Shen, L.; Prouty, C.; Conway, B. R.; Westover, L.; Xu, J. Z.; Look, R. A.; Chen, X.; Beavers, M. P.; Roberts, J.; Murray, W. V.; Demarest, K. T.; Kuo, G. H. Synthesis and biological evaluation of novel macrocyclic bis-7-azaindolylmaleimides as potent and highly selective glycogen synthase kinase-3 beta (GSK-3 beta) inhibitors Bioorg. Med. Chem. 2004, 12 (5) 1239-55
    • (2004) Bioorg. Med. Chem. , vol.12 , Issue.5 , pp. 1239-55
    • Shen, L.1    Prouty, C.2    Conway, B.R.3    Westover, L.4    Xu, J.Z.5    Look, R.A.6    Chen, X.7    Beavers, M.P.8    Roberts, J.9    Murray, W.V.10    Demarest, K.T.11    Kuo, G.H.12
  • 81
    • 50249148317 scopus 로고    scopus 로고
    • Redesigning kinase inhibitors to enhance specificity
    • Crespo, A.; Zhang, X.; Fernandez, A. Redesigning kinase inhibitors to enhance specificity J. Med. Chem. 2008, 51 (16) 4890-8
    • (2008) J. Med. Chem. , vol.51 , Issue.16 , pp. 4890-8
    • Crespo, A.1    Zhang, X.2    Fernandez, A.3
  • 83
    • 0345720252 scopus 로고
    • Additive Methods in Molecular Polarizability
    • Miller, K. J. Additive Methods in Molecular Polarizability J. Am. Chem. Soc. 1990, 112, 8533-42
    • (1990) J. Am. Chem. Soc. , vol.112 , pp. 8533-42
    • Miller, K.J.1
  • 84
    • 0024715163 scopus 로고
    • Topological Organic Chemistry. 1. Graph Theory and Topological Indices of Alkanes
    • Schultz, H. P. Topological Organic Chemistry. 1. Graph Theory and Topological Indices of Alkanes J. Chem. Inf. Comput. Sci. 1989, 29, 227-8
    • (1989) J. Chem. Inf. Comput. Sci. , vol.29 , pp. 227-8
    • Schultz, H.P.1
  • 85
    • 0029404240 scopus 로고
    • Electrotopological State Indices for Atom Types: A Novel Combination of Electronic, Topological and Valence State Information
    • Hall, L. H.; Kier, L. B. Electrotopological State Indices for Atom Types: A Novel Combination of Electronic, Topological and Valence State Information J. Chem. Inf. Comput. Sci. 1995, 35, 1039-45
    • (1995) J. Chem. Inf. Comput. Sci. , vol.35 , pp. 1039-45
    • Hall, L.H.1    Kier, L.B.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.