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Volumn 21, Issue 8, 2010, Pages 1389-1403

Groove binding ligands for the interaction with parallel-stranded ps-duplex DNA and triplex DNA

Author keywords

[No Author keywords available]

Indexed keywords

GENE EXPRESSION REGULATION; GENE THERAPY; LIGANDS; LOCKS (FASTENERS); TRANSCRIPTION;

EID: 77955785549     PISSN: 10431802     EISSN: 15204812     Source Type: Journal    
DOI: 10.1021/bc900247s     Document Type: Article
Times cited : (47)

References (222)
  • 1
    • 0003835009 scopus 로고
    • The molecular basis of cell structure and function
    • 2nd ed., Worth Publishers, Inc., New York.
    • Lehninger, A. L. (1970) The molecular basis of cell structure and function. In Biochemistry, 2nd ed., pp 398- 399, Worth Publishers, Inc., New York.
    • (1970) Biochemistry , pp. 398-399
    • Lehninger, A.L.1
  • 2
    • 0038497542 scopus 로고
    • Molecular structure for nucleic acids: A structure for deoxyribose nucleic acid
    • Watson, J. D. and Crick, F. H. C. (1953) Molecular structure for nucleic acids: A structure for deoxyribose nucleic acid Nature 171, 737-738
    • (1953) Nature , vol.171 , pp. 737-738
    • Watson, J.D.1    Crick, F.H.C.2
  • 3
    • 4544382587 scopus 로고    scopus 로고
    • DNA structure: Revisiting the Watson-Crick double helix
    • Bansal, M. (2003) DNA structure: Revisiting the Watson-Crick double helix Curr. Sci. 85, 1556-1563
    • (2003) Curr. Sci. , vol.85 , pp. 1556-1563
    • Bansal, M.1
  • 4
    • 0023057841 scopus 로고
    • Hairpin duplex formation of the octamer d(m5C-G-m5C-G-T-G-m5C-G) in solution. An NMR study
    • Orbons, L. P. M., van der Marcel, G. A., van Boom, A. H., and Altona, C. (1986) Hairpin duplex formation of the octamer d(m5C-G-m5C-G-T-G-m5C-G) in solution. An NMR study Nucleic Acids Res. 14, 4187-4196
    • (1986) Nucleic Acids Res. , vol.14 , pp. 4187-4196
    • Orbons, L.P.M.1    Van Der Marcel, G.A.2    Van Boom, A.H.3    Altona, C.4
  • 7
    • 0028172448 scopus 로고
    • Parallel nucleic acid helices with Hoogsteen base pairing: Symmetry and structure
    • Raghunathan, G., Miles, H. T., and Sasisekharan, V. (1994) Parallel nucleic acid helices with Hoogsteen base pairing: symmetry and structure Biopolymers 34, 1573-1581
    • (1994) Biopolymers , vol.34 , pp. 1573-1581
    • Raghunathan, G.1    Miles, H.T.2    Sasisekharan, V.3
  • 8
    • 0022779159 scopus 로고
    • Can the double helix be parallel?
    • Pattabiraman, N. (1986) Can the double helix be parallel? Biopolymers 25, 1603-1606
    • (1986) Biopolymers , vol.25 , pp. 1603-1606
    • Pattabiraman, N.1
  • 10
    • 3042681300 scopus 로고    scopus 로고
    • Information content and complexity in the high-order organization of DNA
    • Minsky, A. (2004) Information content and complexity in the high-order organization of DNA Annu. Rev. Biophys. Biomol. Struct. 33, 317-342
    • (2004) Annu. Rev. Biophys. Biomol. Struct. , vol.33 , pp. 317-342
    • Minsky, A.1
  • 11
    • 33947470407 scopus 로고
    • Formation of a three-stranded polynucleotide molecule
    • Felsenfeld, G., Davies, D. R., and Rich, A. (1957) Formation of a three-stranded polynucleotide molecule J. Am. Chem. Soc. 79, 2023-2024
    • (1957) J. Am. Chem. Soc. , vol.79 , pp. 2023-2024
    • Felsenfeld, G.1    Davies, D.R.2    Rich, A.3
  • 13
    • 0021151105 scopus 로고
    • The molecular structure of centromeres and telomeres
    • Blackburn, E. H. and Szostak, J. W. (1984) The molecular structure of centromeres and telomeres Annu. Rev. Biochem. 53, 163-194
    • (1984) Annu. Rev. Biochem. , vol.53 , pp. 163-194
    • Blackburn, E.H.1    Szostak, J.W.2
  • 14
    • 0034122135 scopus 로고    scopus 로고
    • G-quadruplex DNA as a target for drug design
    • Kerwin, S. M. (2000) G-quadruplex DNA as a target for drug design Curr. Pharm. Des. 6, 441-478
    • (2000) Curr. Pharm. Des. , vol.6 , pp. 441-478
    • Kerwin, S.M.1
  • 15
    • 0036519363 scopus 로고    scopus 로고
    • DNA and its associated processes as targets for cancer therapy
    • Hurley, L. H. (2002) DNA and its associated processes as targets for cancer therapy Nat. Rev. Cancer 2, 188-200
    • (2002) Nat. Rev. Cancer , vol.2 , pp. 188-200
    • Hurley, L.H.1
  • 17
    • 0001211098 scopus 로고
    • The molecular bases of the specificity of interaction of transcriptional proteins with genome DNA
    • (Goldberger, R., Ed.), Plenum Press, New York.
    • Von Hippel, P. H. (1979) The molecular bases of the specificity of interaction of transcriptional proteins with genome DNA. Biological regulation and development (Goldberger, R., Ed.) pp 279- 347, Plenum Press, New York.
    • (1979) Biological Regulation and Development , pp. 279-347
    • Von Hippel, P.H.1
  • 18
    • 0020012345 scopus 로고
    • Interactions between functional groups in protein-nucleic acid associations
    • Helene, C. and Lancelot, G. (1982) Interactions between functional groups in protein-nucleic acid associations Prog. Biophys. Mol. Biol. 39, 1-68
    • (1982) Prog. Biophys. Mol. Biol. , vol.39 , pp. 1-68
    • Helene, C.1    Lancelot, G.2
  • 19
    • 0030844864 scopus 로고    scopus 로고
    • Specificity and kinetics of interstrand and intrastrand bifunctional alkylation by nitrogen mustards at a G-G-C sequence
    • Bauer, G. B. and Povrik, L. F. (1997) Specificity and kinetics of interstrand and intrastrand bifunctional alkylation by nitrogen mustards at a G-G-C sequence Nucleic Acids Res. 25, 1211-1218
    • (1997) Nucleic Acids Res. , vol.25 , pp. 1211-1218
    • Bauer, G.B.1    Povrik, L.F.2
  • 20
    • 0030543690 scopus 로고    scopus 로고
    • The events that occur when cisplatin encounters cells
    • Wang, K., Lu, J., and Li, R. (1996) The events that occur when cisplatin encounters cells Coord. Chem. Rev. 151, 53-88
    • (1996) Coord. Chem. Rev. , vol.151 , pp. 53-88
    • Wang, K.1    Lu, J.2    Li, R.3
  • 21
    • 0029059542 scopus 로고
    • Nitrogen mustard inhibits transcription and translation in a cell free system
    • Masta, A., Gray, P. J., and Phillips, D. R. (1995) Nitrogen mustard inhibits transcription and translation in a cell free system Nucleic Acids Res. 23, 3508-3515
    • (1995) Nucleic Acids Res. , vol.23 , pp. 3508-3515
    • Masta, A.1    Gray, P.J.2    Phillips, D.R.3
  • 23
    • 0018659302 scopus 로고
    • The molecular bases for the action of some DNA-binding drugs
    • Neidle, S. (1981) The molecular bases for the action of some DNA-binding drugs Prog. Med. Chem. 16, 151-221
    • (1981) Prog. Med. Chem. , vol.16 , pp. 151-221
    • Neidle, S.1
  • 24
    • 0033806243 scopus 로고    scopus 로고
    • Intercalative binding of small molecules to nucleic acids
    • Graves, D. E. and Velea, L. M. (2000) Intercalative binding of small molecules to nucleic acids Curr. Org. Chem. 4, 915-929
    • (2000) Curr. Org. Chem. , vol.4 , pp. 915-929
    • Graves, D.E.1    Velea, L.M.2
  • 25
    • 0344438824 scopus 로고    scopus 로고
    • DNA and RNA structure
    • 2nd ed. (Blackburn, G. M., and and Gait, M. J., Eds.), Oxford University Press, New York.
    • Blackburn, G. M. (1996) DNA and RNA structure. Nucleic Acids in Chemistry and Biology, 2nd ed. (Blackburn, G. M., and and Gait, M. J., Eds.) pp 15- 81, Oxford University Press, New York.
    • (1996) Nucleic Acids in Chemistry and Biology , pp. 15-81
    • Blackburn, G.M.1
  • 27
    • 52049116568 scopus 로고    scopus 로고
    • Medical implications of benzimidazole derivatives as drugs designed for targeting DNA and DNA associated processes
    • Bhattacharya, S. and Chaudhuri, P. (2008) Medical implications of benzimidazole derivatives as drugs designed for targeting DNA and DNA associated processes Curr. Med. Chem. 15, 1762-1777
    • (2008) Curr. Med. Chem. , vol.15 , pp. 1762-1777
    • Bhattacharya, S.1    Chaudhuri, P.2
  • 30
    • 0035042617 scopus 로고    scopus 로고
    • Recent developments in sequence selective minor groove effectors
    • Reddy, B. S., Sharma, S. K., and Lown, J. W. (2001) Recent developments in sequence selective minor groove effectors Curr. Med. Chem. 8, 475-508
    • (2001) Curr. Med. Chem. , vol.8 , pp. 475-508
    • Reddy, B.S.1    Sharma, S.K.2    Lown, J.W.3
  • 32
    • 0033887479 scopus 로고    scopus 로고
    • Designed sequence-specific minor groove ligands
    • Wemmer, D. E. (2000) Designed sequence-specific minor groove ligands Annu. Rev. Biophys. Biomol. Struct. 29, 439-461
    • (2000) Annu. Rev. Biophys. Biomol. Struct. , vol.29 , pp. 439-461
    • Wemmer, D.E.1
  • 33
    • 4143080522 scopus 로고    scopus 로고
    • Energetics of drug-DNA interactions
    • Chaires, J. B. (1997) Energetics of drug-DNA interactions Biopolymers 44, 201-215
    • (1997) Biopolymers , vol.44 , pp. 201-215
    • Chaires, J.B.1
  • 34
    • 0036647051 scopus 로고    scopus 로고
    • Thermodynamics of drug-DNA interactions
    • Haq, I. (2002) Thermodynamics of drug-DNA interactions Arch. Biochem. Biophys. 403, 1-15
    • (2002) Arch. Biochem. Biophys. , vol.403 , pp. 1-15
    • Haq, I.1
  • 37
    • 4143139849 scopus 로고    scopus 로고
    • Energetic diversity of DNA minor groove recognition by small molecules displayed through some model ligand-DNA systems
    • Lah, J. and Vesnaver, G. (2004) Energetic diversity of DNA minor groove recognition by small molecules displayed through some model ligand-DNA systems J. Mol. Biol. 342, 73-89
    • (2004) J. Mol. Biol. , vol.342 , pp. 73-89
    • Lah, J.1    Vesnaver, G.2
  • 38
    • 0034622566 scopus 로고    scopus 로고
    • Binding of distamycin A and netropsin to the 12mer DNA duplexes containing mixed AT-GC sequences with at most five or three successive at base pairs
    • Lah, J. and Vesnaver, G. (2000) Binding of distamycin A and netropsin to the 12mer DNA duplexes containing mixed AT-GC sequences with at most five or three successive AT base pairs Biochemistry 39, 9317-9326
    • (2000) Biochemistry , vol.39 , pp. 9317-9326
    • Lah, J.1    Vesnaver, G.2
  • 39
    • 33750170036 scopus 로고    scopus 로고
    • Competition of some minor groove binders for a single DNA binding site
    • Lah, J., Carl, N., Drobnak, I., Sumiga, B., and Vesnaver, G. (2006) Competition of some minor groove binders for a single DNA binding site Acta Chim. Slov. 53, 284-291
    • (2006) Acta Chim. Slov. , vol.53 , pp. 284-291
    • Lah, J.1    Carl, N.2    Drobnak, I.3    Sumiga, B.4    Vesnaver, G.5
  • 40
    • 0022587259 scopus 로고
    • Non-intercalating DNA-binding ligands: Specificity of the interaction and their tools in biophysical, biochemical and biological investigations of the genetic material
    • Zimmer, C. and Wahnert, U. (1986) Non-intercalating DNA-binding ligands: specificity of the interaction and their tools in biophysical, biochemical and biological investigations of the genetic material Prog. Biophys. Mol. Biol. 47, 31-112
    • (1986) Prog. Biophys. Mol. Biol. , vol.47 , pp. 31-112
    • Zimmer, C.1    Wahnert, U.2
  • 41
    • 0031574354 scopus 로고    scopus 로고
    • Interaction of minor groove binding ligands with long at tracts
    • Abu-Daya, A. and Fox, K. R. (1997) Interaction of minor groove binding ligands with long AT tracts Nucleic Acids Res. 25, 4962-4969
    • (1997) Nucleic Acids Res. , vol.25 , pp. 4962-4969
    • Abu-Daya, A.1    Fox, K.R.2
  • 42
    • 0035253618 scopus 로고    scopus 로고
    • Induced fit DNA recognition by a minor groove binding analogue of Hoechst 33258: Fluctuations in DNA. A tract structure investigated by NMR and molecular dynamics simulations
    • Bostock-Smith, C. E., Harris, S. A., Laughton, C. A., and Searle, M. S. (2001) Induced fit DNA recognition by a minor groove binding analogue of Hoechst 33258: fluctuations in DNA. A tract structure investigated by NMR and molecular dynamics simulations Nucleic Acids Res. 29, 693-702
    • (2001) Nucleic Acids Res. , vol.29 , pp. 693-702
    • Bostock-Smith, C.E.1    Harris, S.A.2    Laughton, C.A.3    Searle, M.S.4
  • 43
    • 0042929700 scopus 로고    scopus 로고
    • Influence on phenyl ring disubstitution on bisbenzimidazole and terbenzimidazole cytotoxicity: Synthesis and biological evaluation as radioprotectors
    • Tawar, U., Jain, A. K., Dwarakanath, B. S., Chandra, R., Singh, Y., Chaudhury, N. K., Khaitan, D., and Tandon, V. (2003) Influence on phenyl ring disubstitution on bisbenzimidazole and terbenzimidazole cytotoxicity: Synthesis and biological evaluation as radioprotectors J. Med. Chem. 46, 18, 3785-3792
    • (2003) J. Med. Chem. , vol.4618 , pp. 3785-3792
    • Tawar, U.1    Jain, A.K.2    Dwarakanath, B.S.3    Chandra, R.4    Singh, Y.5    Chaudhury, N.K.6    Khaitan, D.7    Tandon, V.8
  • 44
    • 0242667905 scopus 로고    scopus 로고
    • Minor groove binding DNA ligands with expanded A/T sequence length recognition, selective binding to bent DNA regions and enhanced fluorescent properties
    • Tawar, U., Jain, A. K., Chandra, R., Singh, Y., Dwarakanath, B. S., Chaudhury, N. K., Good, L., and Tandon, V. (2003) Minor groove binding DNA ligands with expanded A/T sequence length recognition, selective binding to bent DNA regions and enhanced fluorescent properties Biochemistry 42, 13339-13346
    • (2003) Biochemistry , vol.42 , pp. 13339-13346
    • Tawar, U.1    Jain, A.K.2    Chandra, R.3    Singh, Y.4    Dwarakanath, B.S.5    Chaudhury, N.K.6    Good, L.7    Tandon, V.8
  • 45
    • 76749131597 scopus 로고    scopus 로고
    • Evaluation of electronic effect of phenyl ring substituents on the DNA minor groove binding properties of novel bis and terbenzimidazoles: Synthesis and spectroscopic studies of ligand-DNA interaction
    • Jain, A. K., Gupta, S. K., and Tandon, V. (2009) Evaluation of electronic effect of phenyl ring substituents on the DNA minor groove binding properties of novel bis and terbenzimidazoles: Synthesis and spectroscopic studies of ligand-DNA interaction Oligonucleotides 19, 329-340
    • (2009) Oligonucleotides , vol.19 , pp. 329-340
    • Jain, A.K.1    Gupta, S.K.2    Tandon, V.3
  • 46
    • 58149101421 scopus 로고    scopus 로고
    • Design, synthesis, and DNA binding properties of photoisomerizable azobenzene-distamycin conjugates: An experimental and computational study
    • Ghosh, S., Usharani, D., Paul, A., De, S., Jemmis, E. D., and Bhattacharya, S. (2008) Design, synthesis, and DNA binding properties of photoisomerizable azobenzene-distamycin conjugates: An experimental and computational study Bioconjugate Chem. 19, 2332-2345
    • (2008) Bioconjugate Chem. , vol.19 , pp. 2332-2345
    • Ghosh, S.1    Usharani, D.2    Paul, A.3    De, S.4    Jemmis, E.D.5    Bhattacharya, S.6
  • 47
    • 55449131359 scopus 로고    scopus 로고
    • Photophysical and duplex-DNA binding properties of distamycin dimers based on 4, 4′ and 2, 2′-dialkoxyazobenzenes as the core
    • Ghosh, S., Usharani, D., De, S., Jemmis, E. D., and Bhattacharya, S. (2008) Photophysical and duplex-DNA binding properties of distamycin dimers based on 4, 4′ and 2, 2′-dialkoxyazobenzenes as the core Chem. Asian J. 3, 1949-1961
    • (2008) Chem. Asian J. , vol.3 , pp. 1949-1961
    • Ghosh, S.1    Usharani, D.2    De, S.3    Jemmis, E.D.4    Bhattacharya, S.5
  • 48
    • 0034955770 scopus 로고    scopus 로고
    • Unusual DNA binding exhibited by synthetic distamycin analogs lacking the N-terminal amide unit under high salt conditions
    • Thomas, M., Rao, A. R., Varshney, U., and Bhattacharya, S. (2001) Unusual DNA binding exhibited by synthetic distamycin analogs lacking the N-terminal amide unit under high salt conditions J. Biomol. Str. Dyn. 18, 858-871
    • (2001) J. Biomol. Str. Dyn. , vol.18 , pp. 858-871
    • Thomas, M.1    Rao, A.R.2    Varshney, U.3    Bhattacharya, S.4
  • 49
    • 20944449594 scopus 로고    scopus 로고
    • Theoretical study of molecular recognition by Hoechst 33258 derivatives
    • Kakkar, R., Suruchi, and Grover, R. (2005) Theoretical study of molecular recognition by Hoechst 33258 derivatives J. Biomol. Str. Dyn. 23, 37-47
    • (2005) J. Biomol. Str. Dyn. , vol.23 , pp. 37-47
    • Kakkar, R.1    Suruchi2    Grover, R.3
  • 50
    • 13844316469 scopus 로고    scopus 로고
    • Molecular dynamics simulations and free energy calculations of netropsin and distamycin binding to an AAAAA DNA binding site
    • Dolenc, J., Oostenbrink, C., Koller, J., and van Gunsteren, W. F. (2005) Molecular dynamics simulations and free energy calculations of netropsin and distamycin binding to an AAAAA DNA binding site Nucleic Acids Res. 33, 725-733
    • (2005) Nucleic Acids Res. , vol.33 , pp. 725-733
    • Dolenc, J.1    Oostenbrink, C.2    Koller, J.3    Van Gunsteren, W.F.4
  • 51
    • 0036845501 scopus 로고    scopus 로고
    • Distamycin analogs without leading amide at their N-termini- comparative binding properties to AT- and GC-rich DNA sequences
    • Thomas, M., Varshney, U., and Bhattacharya, S. (2002) Distamycin analogs without leading amide at their N-termini- comparative binding properties to AT- and GC-rich DNA sequences Eur. J. Org. Chem. 3604-3615
    • (2002) Eur. J. Org. Chem. , pp. 3604-3615
    • Thomas, M.1    Varshney, U.2    Bhattacharya, S.3
  • 52
    • 84961983597 scopus 로고    scopus 로고
    • An experimental and computational analysis on the differential role of the positional isomers of symmetric bis-2-(pyridyl)-1 H-benzimidazoles as DNA binding agents
    • Chaudhuri, P., Ganguly, B., and Bhattacharya, S. (2007) An experimental and computational analysis on the differential role of the positional isomers of symmetric bis-2-(pyridyl)-1 H-benzimidazoles as DNA binding agents J. Org. Chem. 72, 1912-1923
    • (2007) J. Org. Chem. , vol.72 , pp. 1912-1923
    • Chaudhuri, P.1    Ganguly, B.2    Bhattacharya, S.3
  • 53
    • 34249018852 scopus 로고    scopus 로고
    • Synthesis, DNA binding, and leishmania topoisomerase inhibition activities of a novel series of anthra[1,2 d ]imidazole-6,11-dione derivatives
    • Chaudhuri, P., Majumder, H. K., and Bhattacharya, S. (2007) Synthesis, DNA binding, and leishmania topoisomerase inhibition activities of a novel series of anthra[1,2 d ]imidazole-6,11-dione derivatives J. Med. Chem. 50, 2536-2540
    • (2007) J. Med. Chem. , vol.50 , pp. 2536-2540
    • Chaudhuri, P.1    Majumder, H.K.2    Bhattacharya, S.3
  • 54
    • 34250645435 scopus 로고    scopus 로고
    • Metal-ion-mediated tuning of duplex DNA binding by bis[2-(2-pyridyl)-1H- benzimidazole]
    • Bhattacharya, S. and Chaudhuri, P. (2007) Metal-ion-mediated tuning of duplex DNA binding by bis[2-(2-pyridyl)-1H-benzimidazole] Chem. Asian J. 2, 648-655
    • (2007) Chem. Asian J. , vol.2 , pp. 648-655
    • Bhattacharya, S.1    Chaudhuri, P.2
  • 55
    • 0030953342 scopus 로고    scopus 로고
    • Recognition of seven base pair sequences in the minor groove of DNA by ten-ring pyrrole-imidazole polyamide hairpins
    • Turner, J. M., Baird, E. E., and Dervan, P. B. (1997) Recognition of seven base pair sequences in the minor groove of DNA by ten-ring pyrrole-imidazole polyamide hairpins J. Am. Chem. Soc. 119, 7636-7644
    • (1997) J. Am. Chem. Soc. , vol.119 , pp. 7636-7644
    • Turner, J.M.1    Baird, E.E.2    Dervan, P.B.3
  • 56
    • 0034661896 scopus 로고    scopus 로고
    • Facile synthesis of oligopeptide distamycin analogs devoid of hydrogen bond donors or acceptors at the N-terminus: Sequence-specific duplex DNA binding as a function of peptide chain length
    • Bhattacharya, S. and Thomas, M. (2000) Facile synthesis of oligopeptide distamycin analogs devoid of hydrogen bond donors or acceptors at the N-terminus: Sequence-specific duplex DNA binding as a function of peptide chain length. Tetrahedron Lett. 41, 5571- 5575.
    • (2000) Tetrahedron Lett , vol.41 , pp. 5571-5575
    • Bhattacharya, S.1    Thomas, M.2
  • 57
    • 0034837071 scopus 로고    scopus 로고
    • Recognition of nine base pairs in the minor groove of DNA by a tripyrrole-peptide-Hoechst conjugate
    • Staz, A. L. and Bruice, T. C. (2000) Recognition of nine base pairs in the minor groove of DNA by a tripyrrole-peptide-Hoechst conjugate J. Am. Chem. Soc. 123, 2469-2477
    • (2000) J. Am. Chem. Soc. , vol.123 , pp. 2469-2477
    • Staz, A.L.1    Bruice, T.C.2
  • 58
    • 0035928647 scopus 로고    scopus 로고
    • DNA recognition by the first tail-to-tail linked distamycin-like oligopeptide dimers
    • Bhattacharya, S. and Thomas, M. (2001) DNA recognition by the first tail-to-tail linked distamycin-like oligopeptide dimers Chem. Commun. 1464-1465
    • (2001) Chem. Commun. , pp. 1464-1465
    • Bhattacharya, S.1    Thomas, M.2
  • 59
    • 2442696840 scopus 로고    scopus 로고
    • Efficient conjugation and characterization of distamycin based peptides with selected oligonucleotide stretches
    • Ghosh, S., Defrancq, E., Lhomme, J. H., Dumy, P., and Bhattacharya, S. (2004) Efficient conjugation and characterization of distamycin based peptides with selected oligonucleotide stretches Bioconjugate Chem. 15, 520-529
    • (2004) Bioconjugate Chem. , vol.15 , pp. 520-529
    • Ghosh, S.1    Defrancq, E.2    Lhomme, J.H.3    Dumy, P.4    Bhattacharya, S.5
  • 61
    • 0026744095 scopus 로고
    • Parallel stranded duplex DNA
    • Rippe, K. and Jovin, T. M. (1992) Parallel stranded duplex DNA Methods Enzymol. 211, 199-220
    • (1992) Methods Enzymol. , vol.211 , pp. 199-220
    • Rippe, K.1    Jovin, T.M.2
  • 62
    • 0042784255 scopus 로고    scopus 로고
    • A novel parallel-stranded DNA duplex with non-canonical A-T and G-C base pairing in synthetic dodacamers
    • Saha, T. and Roy, K. B. (1999) A novel parallel-stranded DNA duplex with non-canonical A-T and G-C base pairing in synthetic dodacamers Curr. Sci. 77, 436-453
    • (1999) Curr. Sci. , vol.77 , pp. 436-453
    • Saha, T.1    Roy, K.B.2
  • 63
    • 0027365615 scopus 로고
    • A Novel DNA duplex: A parallel stranded DNA helix with Hoogsteen base pairing
    • Liu, K., Miles, H. T, Frazier, J., and Sasisekharan, V. (1993) A Novel DNA duplex: A parallel stranded DNA helix with Hoogsteen base pairing Biochemistry 32, 11802-11809
    • (1993) Biochemistry , vol.32 , pp. 11802-11809
    • Liu, K.1    Miles, H.T.2    Frazier, J.3    Sasisekharan, V.4
  • 64
    • 77955780905 scopus 로고    scopus 로고
    • The discovery of triple stranded nucleic acids
    • Springer-Verlag, New York.
    • Soyfer, V. N. and Potaman, V. N. (1996) The discovery of triple stranded nucleic acids. In Triple-Helical Nucleic Acids pp 1- 46, Springer-Verlag, New York.
    • (1996) Triple-Helical Nucleic Acids , pp. 1-46
    • Soyfer, V.N.1    Potaman, V.N.2
  • 65
    • 0024305926 scopus 로고
    • Substrate properties of 25-nt parallel-stranded linear DNA duplexes
    • Rippe, K. and Jovin, T. M. (1989) Substrate properties of 25-nt parallel-stranded linear DNA duplexes Biochemistry 28, 9542-9549
    • (1989) Biochemistry , vol.28 , pp. 9542-9549
    • Rippe, K.1    Jovin, T.M.2
  • 66
    • 0024805843 scopus 로고
    • Parallel DNA: Generation of a duplex between two Drosophila sequences in vitro
    • Tchurikov, N. A., Chernov, B. K., Golov, Y. B., and Nechipurenko, Y. D. (1989) Parallel DNA: generation of a duplex between two Drosophila sequences in vitro FEBS Lett. 257, 415-418
    • (1989) FEBS Lett. , vol.257 , pp. 415-418
    • Tchurikov, N.A.1    Chernov, B.K.2    Golov, Y.B.3    Nechipurenko, Y.D.4
  • 67
    • 0025793352 scopus 로고
    • The hydrogen-bonding structure in parallel-stranded duplex DNA is reverse-Watson-Crick
    • Otto, C., Thomas, G. A., Rippe, K., Jovin, T. M., and Peticolas, W. L. (1991) The hydrogen-bonding structure in parallel-stranded duplex DNA is reverse-Watson-Crick Biochemistry 30, 3062-3069
    • (1991) Biochemistry , vol.30 , pp. 3062-3069
    • Otto, C.1    Thomas, G.A.2    Rippe, K.3    Jovin, T.M.4    Peticolas, W.L.5
  • 69
    • 0000403995 scopus 로고
    • The crystal and molecular structure of a hydrogen bonded complex between 1-methylthymene and 9-methyl thymine
    • Hoogsteen, K. (1963) The crystal and molecular structure of a hydrogen bonded complex between 1-methylthymene and 9-methyl thymine Acta Crystallogr. 16, 907-916
    • (1963) Acta Crystallogr. , vol.16 , pp. 907-916
    • Hoogsteen, K.1
  • 70
    • 0026554887 scopus 로고
    • Quadruplex structure of Oxitrycha telomeric DNA oligonucleotides
    • Smith, F. W. and Feigon, J. (1992) Quadruplex structure of Oxitrycha telomeric DNA oligonucleotides Nature 356, 126-131
    • (1992) Nature , vol.356 , pp. 126-131
    • Smith, F.W.1    Feigon, J.2
  • 71
    • 0029097232 scopus 로고
    • Formation of a parallel-stranded DNA homoduplex by (CGA) repeat oligonucleotides
    • Suda, T., Mishima, Y., Asakura, H., and Kominami, R. (1995) Formation of a parallel-stranded DNA homoduplex by (CGA) repeat oligonucleotides Nucleic Acid Res. 23, 3771-3777
    • (1995) Nucleic Acid Res. , vol.23 , pp. 3771-3777
    • Suda, T.1    Mishima, Y.2    Asakura, H.3    Kominami, R.4
  • 75
    • 0024407937 scopus 로고
    • Helix-coil transition of parallel-stranded DNA. Thermodynamics of hairpin and linear duplex oligonucleotides
    • Ramsing, N. B., Rippe, K., and Jovin, T. M. (1989) Helix-coil transition of parallel-stranded DNA. Thermodynamics of hairpin and linear duplex oligonucleotides Biochemistry 28, 9528-9535
    • (1989) Biochemistry , vol.28 , pp. 9528-9535
    • Ramsing, N.B.1    Rippe, K.2    Jovin, T.M.3
  • 76
    • 0024974072 scopus 로고
    • Solution structure of the parallel-stranded duplex oligonucleotide α-d(TCTAAAC)-βd(AGATTTG)via complete relaxation matrix analysis of the NOE effects and molecular mechanics calculations
    • Lancelot, G., Guesnet, J. L., and Vovelle, F. (1989) Solution structure of the parallel-stranded duplex oligonucleotide α-d(TCTAAAC)- βd(AGATTTG)via complete relaxation matrix analysis of the NOE effects and molecular mechanics calculations Biochemistry 28, 7871-7878
    • (1989) Biochemistry , vol.28 , pp. 7871-7878
    • Lancelot, G.1    Guesnet, J.L.2    Vovelle, F.3
  • 77
    • 0015506395 scopus 로고
    • Polydenylate polyuridylate helices with non-Watson-Crick hydrogen bonding
    • Ishikawa, F., Frazier, J., Howard, F. B., and Miles, H. T. (1972) Polydenylate polyuridylate helices with non-Watson-Crick hydrogen bonding J. Mol. Biol. 70, 475-490
    • (1972) J. Mol. Biol. , vol.70 , pp. 475-490
    • Ishikawa, F.1    Frazier, J.2    Howard, F.B.3    Miles, H.T.4
  • 78
    • 0031660471 scopus 로고    scopus 로고
    • Structural studies of a stable parallel-stranded duplex incorporating isoguanine:cytocine and isocytocine:guanine base pairs by nuclear magnetic resonance spectroscopy
    • Yang, X.-L., Sugiyama, H., Ikeda, S., Saito, I., and Wang, A. H. J. (1998) Structural studies of a stable parallel-stranded duplex incorporating isoguanine:cytocine and isocytocine:guanine base pairs by nuclear magnetic resonance spectroscopy Biophys. J. 75, 1163-1171
    • (1998) Biophys. J. , vol.75 , pp. 1163-1171
    • Yang, X.-L.1    Sugiyama, H.2    Ikeda, S.3    Saito, I.4    Wang, A.H.J.5
  • 79
    • 0023280221 scopus 로고
    • Double helices with parallel strands are formed by nuclease resistant oligo-[α]-deoxynucleotides covalently linked to an intercalating agent with complementary oligo-[β]-deoxynucleotides
    • Praseuth, D., Chassignol, M., Takasugi, M., Doan, T. L., Thuong, N. T., and Helene, C. (1987) Double helices with parallel strands are formed by nuclease resistant oligo-[α]-deoxynucleotides covalently linked to an intercalating agent with complementary oligo-[β]-deoxynucleotides J. Mol. Biol. 196, 939-942
    • (1987) J. Mol. Biol. , vol.196 , pp. 939-942
    • Praseuth, D.1    Chassignol, M.2    Takasugi, M.3    Doan, T.L.4    Thuong, N.T.5    Helene, C.6
  • 81
    • 0002039753 scopus 로고
    • (Eckstein, F., and and Lilley, D. M., Eds.), Springer-Verlag, Berlin.
    • Jovin, T. M. (1991) In Nucleic Acids and Molecular Biology Vol. (Eckstein, F., and and Lilley, D. M., Eds.), pp 25- 52, Vol 5, Springer-Verlag, Berlin.
    • (1991) Nucleic Acids and Molecular Biology Vol. , vol.5 , pp. 25-52
    • Jovin, T.M.1
  • 82
    • 33646191395 scopus 로고    scopus 로고
    • 1 (D) and actinomin to base modified oligonucleotide with parallel chain orientation
    • 1 (D) and actinomin to base modified oligonucleotide with parallel chain orientation Bioorg. Med. Chem. 14, 4089-4100
    • (2006) Bioorg. Med. Chem. , vol.14 , pp. 4089-4100
    • Le, H.1    Peng, X.2    Leonard, P.3    Seela, F.4
  • 83
    • 0027487232 scopus 로고
    • Structure and drug interactions of parallel-stranded DNA studied by infrared spectroscopy and fluorescence
    • Fritzsche, H., Akhebat, A., Taillandier, E., Rippe, K., and Jovin, T. M. (1993) Structure and drug interactions of parallel-stranded DNA studied by infrared spectroscopy and fluorescence Nucleic Acids Res. 21, 5085-5091
    • (1993) Nucleic Acids Res. , vol.21 , pp. 5085-5091
    • Fritzsche, H.1    Akhebat, A.2    Taillandier, E.3    Rippe, K.4    Jovin, T.M.5
  • 85
    • 61349139374 scopus 로고    scopus 로고
    • Benzimidazoles: A minor groove binding ligand mediated stabilization of triple helix
    • Jain, A. K., Tawar, U., Gupta, S. K., Dogra, S. K., and Tandon, V. (2009) Benzimidazoles: A minor groove binding ligand mediated stabilization of triple helix Oligonucleotides 19, 53-62
    • (2009) Oligonucleotides , vol.19 , pp. 53-62
    • Jain, A.K.1    Tawar, U.2    Gupta, S.K.3    Dogra, S.K.4    Tandon, V.5
  • 86
    • 0023619361 scopus 로고
    • Sequence specific cleavage of double helical DNA by triple helix formation
    • Moser, H. E. and Dervan, P. B. (1987) Sequence specific cleavage of double helical DNA by triple helix formation Science 238, 645-650
    • (1987) Science , vol.238 , pp. 645-650
    • Moser, H.E.1    Dervan, P.B.2
  • 87
    • 0026349087 scopus 로고
    • The anti-gene strategy: Control of gene expression by triplex forming oligonucleotides
    • Helene, C. (1991) The anti-gene strategy: control of gene expression by triplex forming oligonucleotides Anti Cancer Drug Des. 6, 569-584
    • (1991) Anti Cancer Drug Des. , vol.6 , pp. 569-584
    • Helene, C.1
  • 88
    • 0035404317 scopus 로고    scopus 로고
    • Triplex-forming molecules: From concepts to applications
    • Faria, M. and Giovannangeli, C. (2001) Triplex-forming molecules: from concepts to applications J. Gene Med. 3, 299-310
    • (2001) J. Gene Med. , vol.3 , pp. 299-310
    • Faria, M.1    Giovannangeli, C.2
  • 89
    • 0036889091 scopus 로고    scopus 로고
    • The use of synthetic oligonucleotides as protein inhibitors and anticode drugs in cancer therapy: Accomplishments and limitations
    • Faria, M. and Ulrich, H. (2002) The use of synthetic oligonucleotides as protein inhibitors and anticode drugs in cancer therapy: accomplishments and limitations Curr. Cancer Drug Targeting 2, 355-368
    • (2002) Curr. Cancer Drug Targeting , vol.2 , pp. 355-368
    • Faria, M.1    Ulrich, H.2
  • 90
    • 0035475787 scopus 로고    scopus 로고
    • Triplex forming oligonucleotides: Sequence-specific tools for gene targeting
    • Knauert, M. P. and Glazer, P. M. (2001) Triplex forming oligonucleotides: sequence-specific tools for gene targeting Hum. Mol. Genet. 10, 2243-2251
    • (2001) Hum. Mol. Genet. , vol.10 , pp. 2243-2251
    • Knauert, M.P.1    Glazer, P.M.2
  • 91
    • 0036120314 scopus 로고    scopus 로고
    • Triplex-forming oligonucleotides: Principles and applications
    • Vasquez, K. M. and Glazer, P. M. (2002) Triplex-forming oligonucleotides: principles and applications Q. Rev. Biophys. 35, 89-107
    • (2002) Q. Rev. Biophys. , vol.35 , pp. 89-107
    • Vasquez, K.M.1    Glazer, P.M.2
  • 92
    • 0024298583 scopus 로고
    • Specificity in formation of triple-stranded nucleic acid helical complexes: Studies with agarose-linked polyribonucleotide affinity columns
    • Letai, A. G., Palladino, M. A., Fromm, E., Rizzo, V., and Fresco, J. R. (1988) Specificity in formation of triple-stranded nucleic acid helical complexes: studies with agarose-linked polyribonucleotide affinity columns Biochemistry 27, 9108-9112
    • (1988) Biochemistry , vol.27 , pp. 9108-9112
    • Letai, A.G.1    Palladino, M.A.2    Fromm, E.3    Rizzo, V.4    Fresco, J.R.5
  • 93
    • 0031893854 scopus 로고    scopus 로고
    • Triplex-directed modification of genes and gene activity
    • Vasquez, K. M. and Wilson, J. H. (1998) Triplex-directed modification of genes and gene activity Trends Biochem. Sci. 23, 4-9
    • (1998) Trends Biochem. Sci. , vol.23 , pp. 4-9
    • Vasquez, K.M.1    Wilson, J.H.2
  • 94
    • 0027494882 scopus 로고
    • Relative specificities in binding of Watson-Crick base pairs by third strand residues in a DNA pyrimidine triplex motif
    • Fossella, J. A., Kim, Y. J., Shih, H., Richards, E. G., and Fresco, J. R. (1993) Relative specificities in binding of Watson-Crick base pairs by third strand residues in a DNA pyrimidine triplex motif Nucleic Acids Res. 21, 4511-4515
    • (1993) Nucleic Acids Res. , vol.21 , pp. 4511-4515
    • Fossella, J.A.1    Kim, Y.J.2    Shih, H.3    Richards, E.G.4    Fresco, J.R.5
  • 95
    • 0014414243 scopus 로고
    • Specificity of the three stranded complex formation between double stranded DNA and single stranded RNAcontaining repeating nucleotide sequences
    • Morgan, A. R. and Wells, R. D. (1968) Specificity of the three stranded complex formation between double stranded DNA and single stranded RNAcontaining repeating nucleotide sequences J. Mol. Biol. 37, 63-80
    • (1968) J. Mol. Biol. , vol.37 , pp. 63-80
    • Morgan, A.R.1    Wells, R.D.2
  • 96
    • 0029914981 scopus 로고    scopus 로고
    • Sequence specificity of triplex DNA formation: Analysis by a combinatorial approach, restriction endonuclease protection selection and amplification
    • Hardenbol, P. and Van Dyke, M. W. (1996) Sequence specificity of triplex DNA formation: analysis by a combinatorial approach, restriction endonuclease protection selection and amplification Proc. Natl. Acad. Sci. U.S.A. 93, 2811-2816
    • (1996) Proc. Natl. Acad. Sci. U.S.A. , vol.93 , pp. 2811-2816
    • Hardenbol, P.1    Van Dyke, M.W.2
  • 97
    • 0025817256 scopus 로고
    • Second structural motif for recognition of DNA by oligonucleotide directed triple helix formation
    • Beal, P. A. and Dervan, P. B. (1991) Second structural motif for recognition of DNA by oligonucleotide directed triple helix formation Science 251, 1360-1363
    • (1991) Science , vol.251 , pp. 1360-1363
    • Beal, P.A.1    Dervan, P.B.2
  • 98
    • 0035339967 scopus 로고    scopus 로고
    • Stabilization of TG- and AG-containing triplexes by triplex binding ligands
    • Keppler, M. D., Neidle, S., and Fox, K. R. (2001) Stabilization of TG- and AG-containing triplexes by triplex binding ligands Nucleic Acids Res. 29, 1935-1942
    • (2001) Nucleic Acids Res. , vol.29 , pp. 1935-1942
    • Keppler, M.D.1    Neidle, S.2    Fox, K.R.3
  • 104
    • 0027467782 scopus 로고
    • Sequence limitations of triple helix formation by alternate-strand recognition
    • Jayasena, S. D. and Johnston, B. H. (1993) Sequence limitations of triple helix formation by alternate-strand recognition Biochemistry 32, 2800-2807
    • (1993) Biochemistry , vol.32 , pp. 2800-2807
    • Jayasena, S.D.1    Johnston, B.H.2
  • 106
    • 0016304026 scopus 로고
    • Structures for the polynucleotide complexes poly(dA).poly(dT) and poly(dT) . poly(dA) . poly(dT)
    • Aruott, S. and Selsing, E. (1974) Structures for the polynucleotide complexes poly(dA) . poly(dT) and poly(dT) . poly(dA) . poly(dT) J. Mol. Biol. 88, 509-512
    • (1974) J. Mol. Biol. , vol.88 , pp. 509-512
    • Aruott, S.1    Selsing, E.2
  • 107
    • 0029127668 scopus 로고
    • Symmetry and structure of RNA and DNA triple helices
    • Raghunathan, G., Miles, H. T., and Sasisekharan, V. (1995) Symmetry and structure of RNA and DNA triple helices Biopolymers 36, 333-343
    • (1995) Biopolymers , vol.36 , pp. 333-343
    • Raghunathan, G.1    Miles, H.T.2    Sasisekharan, V.3
  • 108
    • 0030251336 scopus 로고    scopus 로고
    • Structure of Py. Pu. Py DNA triple helices. Fourier transforms of fiber-type X-Ray diffraction of single crystals
    • Liu, K., Sasisekharan, V., Miles, H. T., and Raghunathan, G. (1996) Structure of Py. Pu. Py DNA triple helices. Fourier transforms of fiber-type X-Ray diffraction of single crystals Biopolymers 39, 573-589
    • (1996) Biopolymers , vol.39 , pp. 573-589
    • Liu, K.1    Sasisekharan, V.2    Miles, H.T.3    Raghunathan, G.4
  • 110
    • 0033969740 scopus 로고    scopus 로고
    • Crystallization and preliminary crystallographic study of triple-helical DNA
    • Han, Z.-J., Rhee, S., Liu, K., Miles, H. T., and Davies, D. R. (2000) Crystallization and preliminary crystallographic study of triple-helical DNA Acta Crystallogr., Sect. D 56, 104-105
    • (2000) Acta Crystallogr., Sect. D , vol.56 , pp. 104-105
    • Han, Z.-J.1    Rhee, S.2    Liu, K.3    Miles, H.T.4    Davies, D.R.5
  • 112
    • 0025027735 scopus 로고
    • Single-strand DNA triple-helix formation
    • Haner, R. and Dervan, P. B. (1990) Single-strand DNA triple-helix formation Biochemistry 29, 9761-9765
    • (1990) Biochemistry , vol.29 , pp. 9761-9765
    • Haner, R.1    Dervan, P.B.2
  • 113
    • 0027464045 scopus 로고
    • Symmetry and molecular structure of a DNA triple helix
    • Raghunathan, G., Mires, H. T., and Sasisekharan, V (1993) Symmetry and molecular structure of a DNA triple helix Biochemistry 32, 455-462
    • (1993) Biochemistry , vol.32 , pp. 455-462
    • Raghunathan, G.1    Mires, H.T.2    Sasisekharan, V.3
  • 114
    • 0027918138 scopus 로고    scopus 로고
    • Solution structure of a purine.purine.pyrimidine DNA triplex containing G.GC and T.AT triples
    • Radhakrishnan, I. and Patel, D. J. Solution structure of a purine.purine.pyrimidine DNA triplex containing G.GC and T.AT triples. Structure 1, 135- 152.
    • Structure , vol.1 , pp. 135-152
    • Radhakrishnan, I.1    Patel, D.J.2
  • 115
    • 0027444623 scopus 로고
    • Nuclear magnetic resonance structural studies of A . at base triple alignments in intramolecular purine . purine . pyrimidine DNA triplexes in solution
    • Radhakrishnan, I., de los Santos, C., and Patel, D. J. (1993) Nuclear magnetic resonance structural studies of A . AT base triple alignments in intramolecular purine . purine . pyrimidine DNA triplexes in solution J. Mol. Biol. 234, 188-197
    • (1993) J. Mol. Biol. , vol.234 , pp. 188-197
    • Radhakrishnan, I.1    De Los Santos, C.2    Patel, D.J.3
  • 116
    • 0020081313 scopus 로고
    • Homocopolymer sequences in the spacer of sea urchin histone gene repeat are sensitive to S1 nuclease
    • Hentehel, C. C. (1982) Homocopolymer sequences in the spacer of sea urchin histone gene repeat are sensitive to S1 nuclease Nature 295, 714-716
    • (1982) Nature , vol.295 , pp. 714-716
    • Hentehel, C.C.1
  • 118
    • 0024510279 scopus 로고
    • Topology and formation of triple stranded H-DNA
    • Htun, H. and Dahlberg, J. E. (1989) Topology and formation of triple stranded H-DNA Science 243, 1571-1576
    • (1989) Science , vol.243 , pp. 1571-1576
    • Htun, H.1    Dahlberg, J.E.2
  • 119
    • 0025945566 scopus 로고
    • Binding of ethidium bromide to a DNA triple helix. Evidence for intercalation
    • Panas Scaria, P. V. and Shafer, R. H. (1991) Binding of ethidium bromide to a DNA triple helix. Evidence for intercalation J. Biol. Chem. 266, 5417-5423
    • (1991) J. Biol. Chem. , vol.266 , pp. 5417-5423
    • Panas Scaria, P.V.1    Shafer, R.H.2
  • 120
    • 0033557144 scopus 로고    scopus 로고
    • Chromosomal mutations induced by triplex-forming oligonucleotides in mammalian cells
    • Vasquez, K. M., Wang, G., Havre, P. A., and Glazer, P. M. (1999) Chromosomal mutations induced by triplex-forming oligonucleotides in mammalian cells Nucleic Acids Res. 27, 1176-1181
    • (1999) Nucleic Acids Res. , vol.27 , pp. 1176-1181
    • Vasquez, K.M.1    Wang, G.2    Havre, P.A.3    Glazer, P.M.4
  • 122
    • 0037445157 scopus 로고    scopus 로고
    • Site-specific mutagenesis by triple-helix forming oligonucleotides containing a reactive nucleoside analogue
    • Nagatsugi, F., Sasaki, S., Miller, P. S., and Seidman, M. M. (2003) Site-specific mutagenesis by triple-helix forming oligonucleotides containing a reactive nucleoside analogue Nucleic Acids Res. 31 e31=
    • (2003) Nucleic Acids Res. , vol.31
    • Nagatsugi, F.1    Sasaki, S.2    Miller, P.S.3    Seidman, M.M.4
  • 123
    • 0029912788 scopus 로고    scopus 로고
    • Recombination induced by triple-helix-targeted DNA damage in mammalian cells
    • Faruqi, A. F., Seidman, M. M., Segal, D. J., Carroll, D., and Glazer, P. M. (1996) Recombination induced by triple-helix-targeted DNA damage in mammalian cells Mol. Cell. Biol. 16, 6820-6828
    • (1996) Mol. Cell. Biol. , vol.16 , pp. 6820-6828
    • Faruqi, A.F.1    Seidman, M.M.2    Segal, D.J.3    Carroll, D.4    Glazer, P.M.5
  • 124
    • 0034255524 scopus 로고    scopus 로고
    • High-frequency intrachromosomal gene conversion induced by triplex-forming oligonucleotides microinjected into mouse cells
    • Luo, Z., Macris, M. A., Faruqi, A. F., and Glazer, P. M. (2000) High-frequency intrachromosomal gene conversion induced by triplex-forming oligonucleotides microinjected into mouse cells Proc. Natl. Acad. Sci. U.S.A. 97, 9003-9008
    • (2000) Proc. Natl. Acad. Sci. U.S.A. , vol.97 , pp. 9003-9008
    • Luo, Z.1    MacRis, M.A.2    Faruqi, A.F.3    Glazer, P.M.4
  • 125
    • 0033597251 scopus 로고    scopus 로고
    • Targeted correction of an episomal gene in mammalian cells by a short DNA fragment tethered to a triplex-forming oligonucleotide
    • Chan, P. P., Lin, M., Faruqi, A. F., Powell, J., Seidman, M. M., and Glazer, P. M. (1999) Targeted correction of an episomal gene in mammalian cells by a short DNA fragment tethered to a triplex-forming oligonucleotide J. Biol. Chem. 274, 11541-11548
    • (1999) J. Biol. Chem. , vol.274 , pp. 11541-11548
    • Chan, P.P.1    Lin, M.2    Faruqi, A.F.3    Powell, J.4    Seidman, M.M.5    Glazer, P.M.6
  • 126
    • 0032874955 scopus 로고    scopus 로고
    • Correction of chromosomal point mutations in human cells with bifunctional oligonucleotides
    • Culver, K. W., Hsieh, W. T., Huyen, Y, Chen, V, Liu, J, Khripine, Y, and Khorlin, A. (1999) Correction of chromosomal point mutations in human cells with bifunctional oligonucleotides Nat. Biotechnol. 17, 989-993
    • (1999) Nat. Biotechnol. , vol.17 , pp. 989-993
    • Culver, K.W.1    Hsieh, W.T.2    Huyen, Y.3    Chen, V.4    Liu, J.5    Khripine, Y.6    Khorlin, A.7
  • 127
    • 0036479132 scopus 로고    scopus 로고
    • Design and optimization of camptothecin conjugates of triple helix-forming oligonucleotides for sequence-specific DNA cleavage by Topoisomerase i
    • Arimondo, P. B., Boutorine, A., Baldeyrou, B., Bailly, C., Kuwahara, M., Hecht, S. M., Sun, J.-S., Garestier, T., and Helene, C. (2002) Design and optimization of camptothecin conjugates of triple helix-forming oligonucleotides for sequence-specific DNA cleavage by Topoisomerase I J. Biol. Chem. 277, 3132-3140
    • (2002) J. Biol. Chem. , vol.277 , pp. 3132-3140
    • Arimondo, P.B.1    Boutorine, A.2    Baldeyrou, B.3    Bailly, C.4    Kuwahara, M.5    Hecht, S.M.6    Sun, J.-S.7    Garestier, T.8    Helene, C.9
  • 128
    • 0000778306 scopus 로고
    • Sequence-specific double-strand alkylation and cleavage of DNA mediated by triple-helix formation
    • Povsic, T. J., Strobel, S. A., and Dervan, P. B. (1992) Sequence-specific double-strand alkylation and cleavage of DNA mediated by triple-helix formation J. Am. Chem. Soc. 114, 5934-5941
    • (1992) J. Am. Chem. Soc. , vol.114 , pp. 5934-5941
    • Povsic, T.J.1    Strobel, S.A.2    Dervan, P.B.3
  • 129
    • 0026348013 scopus 로고
    • Site-specific cleavage of human chromosome 4 mediated by triple-helix formation
    • Strobel, S. A., Doucette-Stamm, L. A., Riba, L., Housman, D. E., and Dervan, P. B. (1991) Site-specific cleavage of human chromosome 4 mediated by triple-helix formation Science 254, 1639-1642
    • (1991) Science , vol.254 , pp. 1639-1642
    • Strobel, S.A.1    Doucette-Stamm, L.A.2    Riba, L.3    Housman, D.E.4    Dervan, P.B.5
  • 130
    • 0037995432 scopus 로고    scopus 로고
    • A bis-alkylating triplex forming oligonucleotide inhibits intracellular reporter gene expression and prevents triplex unwinding due to helicase activity
    • Ziemba, A J., Reed, M. W., Raney, K. D., Byrd, A. B., and Ebbinghaus, S. W. (2003) A bis-alkylating triplex forming oligonucleotide inhibits intracellular reporter gene expression and prevents triplex unwinding due to helicase activity Biochemistry 42, 5013-5024
    • (2003) Biochemistry , vol.42 , pp. 5013-5024
    • Ziemba, A.J.1    Reed, M.W.2    Raney, K.D.3    Byrd, A.B.4    Ebbinghaus, S.W.5
  • 131
    • 85046527842 scopus 로고    scopus 로고
    • A new family of sequence-specific DNA-cleaving agents directed by triple-helical structures: Benzopyridoindole-EDTA conjugates
    • Marchand, C., Nguyen, C. H., Ward, B., Sun, J.-S., Bisagni, E., Garestier, T., and Helene, C. (2000) A new family of sequence-specific DNA-cleaving agents directed by triple-helical structures: benzopyridoindole- EDTA conjugates Chem.- Eur. J. 6, 1559-1563
    • (2000) Chem.- Eur. J. , vol.6 , pp. 1559-1563
    • Marchand, C.1    Nguyen, C.H.2    Ward, B.3    Sun, J.-S.4    Bisagni, E.5    Garestier, T.6    Helene, C.7
  • 132
    • 37049088235 scopus 로고
    • Ambient oxygen activating water soluble cobalt-salen complex for DNA cleavage
    • Bhattacharya, S. and Mandal, S. S. (1995) Ambient oxygen activating water soluble cobalt-salen complex for DNA cleavage J. Chem. Soc. Chem. Commun. 2489-2490
    • (1995) J. Chem. Soc. Chem. Commun. , pp. 2489-2490
    • Bhattacharya, S.1    Mandal, S.S.2
  • 133
    • 0029954761 scopus 로고    scopus 로고
    • DNA cleavage by intercalatable cobalt-bispicolylamine complexes activated by visible light
    • Bhattacharya, S. and Mandal, S. S. (1996) DNA cleavage by intercalatable cobalt-bispicolylamine complexes activated by visible light Chem. Commun. 1515-1516
    • (1996) Chem. Commun. , pp. 1515-1516
    • Bhattacharya, S.1    Mandal, S.S.2
  • 134
    • 0031281732 scopus 로고    scopus 로고
    • Role of the central metal ion and ligand charge in the DNA binding and modification by metallosalen complexes
    • Mandal, S. S., Varshney, U., and Bhattacharya, S. (1997) Role of the central metal ion and ligand charge in the DNA binding and modification by metallosalen complexes Bioconjugate Chem. 8, 798-812
    • (1997) Bioconjugate Chem. , vol.8 , pp. 798-812
    • Mandal, S.S.1    Varshney, U.2    Bhattacharya, S.3
  • 135
    • 0001386899 scopus 로고
    • Sequence-specific cleavage of single-stranded DNA: Oligodeoxynucleotide- EDTA.Fe(II)
    • Dreyer, G. B. and Dervan, P. B. (1985) Sequence-specific cleavage of single-stranded DNA: Oligodeoxynucleotide-EDTA.Fe(II) Proc. Natl. Acad. Sci. U.S.A. 82, 968-972
    • (1985) Proc. Natl. Acad. Sci. U.S.A. , vol.82 , pp. 968-972
    • Dreyer, G.B.1    Dervan, P.B.2
  • 136
    • 0030248405 scopus 로고    scopus 로고
    • Metal-ion dependent oxidative DNA cleavage by transition metal complex of a new water soluble salen derivative
    • Mandal, S. S., Kumar, N. V., Varshney, U., and Bhattacharya, S. (1996) Metal-ion dependent oxidative DNA cleavage by transition metal complex of a new water soluble salen derivative J. Inorg. Biochem. 63, 265-272
    • (1996) J. Inorg. Biochem. , vol.63 , pp. 265-272
    • Mandal, S.S.1    Kumar, N.V.2    Varshney, U.3    Bhattacharya, S.4
  • 137
    • 0036236762 scopus 로고    scopus 로고
    • Sequence-specific gene cleavage in intact mammalian cells by 125I-labeled triplex-forming oligonucleotides conjugated with nuclear localization signal peptide
    • Sedelnikova, O. A., Karamychev, V. N., Panyutin, I. G., and Neumann, R. D. (2002) Sequence-specific gene cleavage in intact mammalian cells by 125I-labeled triplex-forming oligonucleotides conjugated with nuclear localization signal peptide Antisense Nucleic Acid Drug Dev. 12, 43-49
    • (2002) Antisense Nucleic Acid Drug Dev. , vol.12 , pp. 43-49
    • Sedelnikova, O.A.1    Karamychev, V.N.2    Panyutin, I.G.3    Neumann, R.D.4
  • 138
    • 1542456344 scopus 로고    scopus 로고
    • Photochemotherapy and photodynamic therapy
    • (Freedberg, I. M., Eizen, A. Z., Wolff, K., Austen, K. F., Goldsmith, L. A., and, and Katz, S. I., Eds.), McGraw-Hill, New York.
    • Honigsmann, H., Szeimies, R. M., Knobler, R., Fitzpatrick, T. B., Pathak, M. A., and Wolff, K. (2003) Photochemotherapy and photodynamic therapy. Fitzpatricks dermatology in general medicine (Freedberg, I. M., Eizen, A. Z., Wolff, K., Austen, K. F., Goldsmith, L. A., and, and Katz, S. I., Eds.) pp 2477- 2493, McGraw-Hill, New York.
    • (2003) Fitzpatricks Dermatology in General Medicine , pp. 2477-2493
    • Honigsmann, H.1    Szeimies, R.M.2    Knobler, R.3    Fitzpatrick, T.B.4    Pathak, M.A.5    Wolff, K.6
  • 140
    • 0033611529 scopus 로고    scopus 로고
    • Cancer genetics: Tumor suppressor meets oncogene
    • Fearon, E. R. and Dang, C. V. (1999) Cancer genetics: tumor suppressor meets oncogene Curr. Biol. 9, R62-R65
    • (1999) Curr. Biol. , vol.9
    • Fearon, E.R.1    Dang, C.V.2
  • 142
    • 0034159993 scopus 로고    scopus 로고
    • Understanding oligonucleotide-mediated inhibition of gene expression in Xenopus laevis oocytes
    • Bailey, C. and Weeks, D. L. (2000) Understanding oligonucleotide-mediated inhibition of gene expression in Xenopus laevis oocytes Nucleic Acids Res. 28, 1154-1161
    • (2000) Nucleic Acids Res. , vol.28 , pp. 1154-1161
    • Bailey, C.1    Weeks, D.L.2
  • 145
    • 0000834165 scopus 로고
    • Molecular recognition by circular oligonucleotides: Increasing the selectivity of DNA binding
    • Kool, E. (1991) Molecular recognition by circular oligonucleotides: increasing the selectivity of DNA binding J. Am. Chem. Soc. 113, 6265-6266
    • (1991) J. Am. Chem. Soc. , vol.113 , pp. 6265-6266
    • Kool, E.1
  • 146
    • 11944257696 scopus 로고
    • Structural effects in the recognition of DNA by circular oligonucleotides
    • Prakash, G. and Kool, E. (1992) Structural effects in the recognition of DNA by circular oligonucleotides J. Am. Chem. Soc. 114, 523-529
    • (1992) J. Am. Chem. Soc. , vol.114 , pp. 523-529
    • Prakash, G.1    Kool, E.2
  • 148
    • 0142009650 scopus 로고    scopus 로고
    • Thermodynamic and kinetic stability of intermolecular triple helices containing different proportions of CGC and TAT triplets
    • James, P. L., Brown, T., and Fox, K. R. (2003) Thermodynamic and kinetic stability of intermolecular triple helices containing different proportions of CGC and TAT triplets Nucleic Acids Res. 31, 5598-5606
    • (2003) Nucleic Acids Res. , vol.31 , pp. 5598-5606
    • James, P.L.1    Brown, T.2    Fox, K.R.3
  • 149
    • 0036803090 scopus 로고    scopus 로고
    • Design and Structural analysis of hairpin-TFO for transcriptional activation of genes in S. cerevisiae
    • Ghosh, M. K., Katyal, A., Brahmachari, V., and Chandra, R. (2002) Design and Structural analysis of hairpin-TFO for transcriptional activation of genes in S. cerevisiae J. Biomol. Str. Dyn. 20, 265-274
    • (2002) J. Biomol. Str. Dyn. , vol.20 , pp. 265-274
    • Ghosh, M.K.1    Katyal, A.2    Brahmachari, V.3    Chandra, R.4
  • 150
    • 0028206493 scopus 로고
    • Divalent metal cations upon coordination on the N-7 of purines differentially stabilize the PyPuPu DNA triplex due to unequal Hoogsteen type hydrogen bond
    • Potaman, V. N. and Soyfer, V. N. (1994) Divalent metal cations upon coordination on the N-7 of purines differentially stabilize the PyPuPu DNA triplex due to unequal Hoogsteen type hydrogen bond J. Biomol. Str. Dyn. 11, 1035-1040
    • (1994) J. Biomol. Str. Dyn. , vol.11 , pp. 1035-1040
    • Potaman, V.N.1    Soyfer, V.N.2
  • 151
    • 0025823653 scopus 로고
    • Polyamines favor DNA triplex formation at neutral pH
    • Hampel, K. J., Crosson, P., and Lee, J. S. (1991) Polyamines favor DNA triplex formation at neutral pH Biochemistry 30, 4455-4459
    • (1991) Biochemistry , vol.30 , pp. 4455-4459
    • Hampel, K.J.1    Crosson, P.2    Lee, J.S.3
  • 152
    • 0027405575 scopus 로고
    • Plasmid dimerization mediated by triplex formation between polypyrimidine-polypurine repeats
    • Hampel, K. J., Burkholder, G. D., and Lee, J. S. (1993) Plasmid dimerization mediated by triplex formation between polypyrimidine-polypurine repeats Biochemistry 32, 1072-1077
    • (1993) Biochemistry , vol.32 , pp. 1072-1077
    • Hampel, K.J.1    Burkholder, G.D.2    Lee, J.S.3
  • 154
    • 0021769970 scopus 로고
    • Poly(pyrimidine). poly (purine) synthetic DNAs containing 5- methylcytosine form stable triplexes at neutral pH
    • Lee, J. S., Woodsworth, M. L., Latimer, L. J. P., and Morgan, A. R. (1984) Poly(pyrimidine). poly (purine) synthetic DNAs containing 5- methylcytosine form stable triplexes at neutral pH Nucleic Acid Res. 12, 6603-6614
    • (1984) Nucleic Acid Res. , vol.12 , pp. 6603-6614
    • Lee, J.S.1    Woodsworth, M.L.2    Latimer, L.J.P.3    Morgan, A.R.4
  • 155
    • 0024357372 scopus 로고
    • Inhibition of DNA binding protines by oligonucleotide directed triple helix formation
    • Maher III, L. J., Wold, B. O., and Dervan, P. B. (1989) Inhibition of DNA binding protines by oligonucleotide directed triple helix formation Science 245, 725-730
    • (1989) Science , vol.245 , pp. 725-730
    • Maher Iii, L.J.1    Wold, B.O.2    Dervan, P.B.3
  • 157
    • 0027245412 scopus 로고
    • 7, 8-Dihydro-8-oxoadenine as a replacement for cytosine in the third strand of triple helixes. Triplex formation without hypochromicity
    • Jetter, M. C. and Hobbs, F. W. (1993) 7, 8-Dihydro-8-oxoadenine as a replacement for cytosine in the third strand of triple helixes. Triplex formation without hypochromicity Biochemistry 32, 3249-3254
    • (1993) Biochemistry , vol.32 , pp. 3249-3254
    • Jetter, M.C.1    Hobbs, F.W.2
  • 158
    • 1642631504 scopus 로고
    • Design of a non-natural deoxyribonucleoside for recognition of GC base pairs by oligonucleotide-directed triple helix formation
    • Koh, J. S. and Dervan, P. B. (1992) Design of a non-natural deoxyribonucleoside for recognition of GC base pairs by oligonucleotide-directed triple helix formation J. Am. Chem. Soc. 114, 1470-1478
    • (1992) J. Am. Chem. Soc. , vol.114 , pp. 1470-1478
    • Koh, J.S.1    Dervan, P.B.2
  • 159
    • 67849097706 scopus 로고    scopus 로고
    • Silver ion unusually stabilizes the structure of a parallel-motif DNA triplex
    • Ihara, T., Ishii, T., Araki, N., Wilson, A. W., and Akinori Jyo, A. (2009) Silver ion unusually stabilizes the structure of a parallel-motif DNA triplex J. Am. Chem. Soc. 131, 3836-3827
    • (2009) J. Am. Chem. Soc. , vol.131 , pp. 3836-3827
    • Ihara, T.1    Ishii, T.2    Araki, N.3    Wilson, A.W.4    Akinori Jyo, A.5
  • 160
    • 62549100065 scopus 로고    scopus 로고
    • DNA triplex formation with 5-dimethylaminopropargyl deoxyuridine
    • Rusling, D. A., Peng, G., Srinivasan, N., Fox, K. R., and Brown, T. (2009) DNA triplex formation with 5-dimethylaminopropargyl deoxyuridine Nucleic Acids Res. 37, 1288-1296
    • (2009) Nucleic Acids Res. , vol.37 , pp. 1288-1296
    • Rusling, D.A.1    Peng, G.2    Srinivasan, N.3    Fox, K.R.4    Brown, T.5
  • 161
    • 0002855393 scopus 로고
    • Oligonucleotide analogs with a polyamide backbone
    • (Crooke, S. T., and and Lebleu, B., Eds.), CRC Press, Boca Raton, FL.
    • Nielsen, P. E., Egholm, M., Berg, R. H., and Buchardt, O. (1993) Oligonucleotide analogs with a polyamide backbone. In Antisense Research and Applications (Crooke, S. T., and and Lebleu, B., Eds.) pp 363- 373, CRC Press, Boca Raton, FL.
    • (1993) Antisense Research and Applications , pp. 363-373
    • Nielsen, P.E.1    Egholm, M.2    Berg, R.H.3    Buchardt, O.4
  • 162
    • 0035369053 scopus 로고    scopus 로고
    • Solid-phase synthesis of ologopurine deoxynucleic guanidine (DNG) and analysis of binding with DNA oligomers
    • Linkletter, B. A., Szabo, I. E., and Bruice, T. C. (2001) Solid-phase synthesis of ologopurine deoxynucleic guanidine (DNG) and analysis of binding with DNA oligomers Nucleic Acids Res. 29, 2370-2376
    • (2001) Nucleic Acids Res. , vol.29 , pp. 2370-2376
    • Linkletter, B.A.1    Szabo, I.E.2    Bruice, T.C.3
  • 163
    • 0035951767 scopus 로고    scopus 로고
    • 2′- O, 4′-C-Methylene bridged nucleic acid modification promotes pyrimidine motif triplex DNA formation at physiological pH. Thermodynamic and kinetic studies
    • Torigoe, H., Hani, Y., Sekiguchi, M., Obika, S., and Imanishi, T. (2001) 2′- O, 4′-C-Methylene bridged nucleic acid modification promotes pyrimidine motif triplex DNA formation at physiological pH. Thermodynamic and kinetic studies J. Biol. Chem. 276, 2354-2360
    • (2001) J. Biol. Chem. , vol.276 , pp. 2354-2360
    • Torigoe, H.1    Hani, Y.2    Sekiguchi, M.3    Obika, S.4    Imanishi, T.5
  • 164
    • 36849035783 scopus 로고    scopus 로고
    • Perspectives on chemistry and therapeutic applications of locked nucleic acid (LNA)
    • Kaur, H., Babu, B. R., and Maiti, S. (2007) Perspectives on chemistry and therapeutic applications of locked nucleic acid (LNA) Chem. Rev. 107, 4672-4697
    • (2007) Chem. Rev. , vol.107 , pp. 4672-4697
    • Kaur, H.1    Babu, B.R.2    Maiti, S.3
  • 165
    • 33745887308 scopus 로고    scopus 로고
    • DNA major groove binders: Triple helix-forming oligonucleotides, triple helix-specific DNA ligands and cleaving agents
    • Escude, C. and Sun, J.-S. (2005) DNA major groove binders: Triple helix-forming oligonucleotides, triple helix-specific DNA ligands and cleaving agents Top. Curr. Chem. 253, 109-148
    • (2005) Top. Curr. Chem. , vol.253 , pp. 109-148
    • Escude, C.1    Sun, J.-S.2
  • 167
    • 37148999065 scopus 로고    scopus 로고
    • Kinetic studies on the formation of DNA triplexes containing the nucleoside analogue 2′- O-(2-aminoethyl)-5-(3-amino-1-propynyl)uridine
    • Rusling, D. A., Broughton-Head, V. J., Tuck, A., Khairallah, H., Osborne, S. D., Brown, T., and Fox, K. R. (2008) Kinetic studies on the formation of DNA triplexes containing the nucleoside analogue 2′- O-(2-aminoethyl)-5-(3- amino-1-propynyl)uridine Org. Biomol. Chem. 6, 122-129
    • (2008) Org. Biomol. Chem. , vol.6 , pp. 122-129
    • Rusling, D.A.1    Broughton-Head, V.J.2    Tuck, A.3    Khairallah, H.4    Osborne, S.D.5    Brown, T.6    Fox, K.R.7
  • 168
    • 0037908884 scopus 로고    scopus 로고
    • Synthesis of 3′-3′-linked oligonucleotides branched by a pentaerythritol linker and the thermal stabilities of the triplexes with single-stranded DNA or RNA
    • Ueno, Y., Shibata, A., Matsuda, A., and Kitade, Y. (2003) Synthesis of 3′-3′-linked oligonucleotides branched by a pentaerythritol linker and the thermal stabilities of the triplexes with single-stranded DNA or RNA Bioconjugate Chem 14, 684-689
    • (2003) Bioconjugate Chem , vol.14 , pp. 684-689
    • Ueno, Y.1    Shibata, A.2    Matsuda, A.3    Kitade, Y.4
  • 169
    • 0027451316 scopus 로고
    • DNA Triple-helix specific intercalators as antigene enhancers: Unfused aromatic cations?
    • Wilson, W. D., Tanious, F. A., Mizan, S., Yao, S., Kiselyov, A. S., Zon, G., and Strekowski, L. (1993) DNA Triple-helix specific intercalators as antigene enhancers: unfused aromatic cations? Biochemistry 32, 10614-10621
    • (1993) Biochemistry , vol.32 , pp. 10614-10621
    • Wilson, W.D.1    Tanious, F.A.2    Mizan, S.3    Yao, S.4    Kiselyov, A.S.5    Zon, G.6    Strekowski, L.7
  • 170
    • 0028609271 scopus 로고
    • Effect of a triplex-binding ligand on parallel and anti-parallel DNA triple helixes using short unmodified and acridine-linked oligonucleotides
    • Cassidy, S. A., Strekowski, L., Wilson, W. D., and Fox, K. R. (1994) Effect of a triplex-binding ligand on parallel and anti-parallel DNA triple helixes using short unmodified and acridine-linked oligonucleotides Biochemistry 33, 15338-15347
    • (1994) Biochemistry , vol.33 , pp. 15338-15347
    • Cassidy, S.A.1    Strekowski, L.2    Wilson, W.D.3    Fox, K.R.4
  • 171
    • 62549131251 scopus 로고    scopus 로고
    • Discovery of novel triple helical DNA intercalators by an integrated virtual and actual screening platform
    • Holt, P. A., Ragazzon, P., Strekowski, L., Chaires, J. B., and Trent, J. O. (2009) Discovery of novel triple helical DNA intercalators by an integrated virtual and actual screening platform Nucleic Acids Res. 37, 1280-1287
    • (2009) Nucleic Acids Res. , vol.37 , pp. 1280-1287
    • Holt, P.A.1    Ragazzon, P.2    Strekowski, L.3    Chaires, J.B.4    Trent, J.O.5
  • 173
    • 34248531512 scopus 로고    scopus 로고
    • Ligand binding mode to duplex and triplex DNA assessed by combining electrospray tandem mass spectrometry and molecular modeling
    • Rosu, F., Nguyen, C-H, De Pauw, E., and Gabelica, V. (2007) Ligand binding mode to duplex and triplex DNA assessed by combining electrospray tandem
    • (2007) J. Am. Soc. Mass Spectrom. , vol.18 , pp. 1052-1062
    • Rosu, F.1    Nguyen, C.-H.2    De Pauw, E.3    Gabelica, V.4
  • 175
    • 0032750623 scopus 로고    scopus 로고
    • Triple helix formation and the antigene strategy for sequence-specific control of gene expression
    • Praseuth, D., Guieysse, A. L., and Helene, C. (1999) Triple helix formation and the antigene strategy for sequence-specific control of gene expression Biochim. Biophys. Acta 1489, 181-206
    • (1999) Biochim. Biophys. Acta , vol.1489 , pp. 181-206
    • Praseuth, D.1    Guieysse, A.L.2    Helene, C.3
  • 178
    • 33947637918 scopus 로고    scopus 로고
    • Triple-helix mediated excimer and exciplex formation
    • Trkulja, I. and Haner, R. (2007) Triple-helix mediated excimer and exciplex formation Bioconjugate Chem. 18, 289-292
    • (2007) Bioconjugate Chem. , vol.18 , pp. 289-292
    • Trkulja, I.1    Haner, R.2
  • 179
    • 0034123587 scopus 로고    scopus 로고
    • Targeting multi-stranded DNA structures
    • Jenkins, T. C. (2000) Targeting multi-stranded DNA structures Curr. Med. Chem. 7, 99-115
    • (2000) Curr. Med. Chem. , vol.7 , pp. 99-115
    • Jenkins, T.C.1
  • 180
    • 0028107012 scopus 로고
    • Ligand induced formation of nucleic acid triple helices
    • Pilch, D. S. and Breslauer, K. J. (1994) Ligand induced formation of nucleic acid triple helices Proc. Natl. Acad. Sci. U.S.A. 91, 9332-9336
    • (1994) Proc. Natl. Acad. Sci. U.S.A. , vol.91 , pp. 9332-9336
    • Pilch, D.S.1    Breslauer, K.J.2
  • 181
    • 0028880359 scopus 로고
    • Berenil binding to higher ordered nucleic acid structures: Complexation with a DNA and RNA triple helix
    • Pilch, D. S., Kirolos, M. A., and Breslauer, K J. (1995) Berenil binding to higher ordered nucleic acid structures: complexation with a DNA and RNA triple helix Biochemistry 34, 16107-16124
    • (1995) Biochemistry , vol.34 , pp. 16107-16124
    • Pilch, D.S.1    Kirolos, M.A.2    Breslauer, K.J.3
  • 182
    • 0026721049 scopus 로고
    • Drug binding to higher ordered DNA structures: Netropsin complexation with a nucleic acid triple helix
    • Park, Y. W. and Breslauer, K. J. (1992) Drug binding to higher ordered DNA structures: netropsin complexation with a nucleic acid triple helix Proc. Natl. Acad. Sci. U.S.A. 92, 6653-6657
    • (1992) Proc. Natl. Acad. Sci. U.S.A. , vol.92 , pp. 6653-6657
    • Park, Y.W.1    Breslauer, K.J.2
  • 183
    • 0026442471 scopus 로고
    • Binding of netropsin to a DNA triple helix
    • Durand, M., Thuong, N. T., and Maurizot, J. C. (1992) Binding of netropsin to a DNA triple helix J. Biol. Chem. 267, 24394-24399
    • (1992) J. Biol. Chem. , vol.267 , pp. 24394-24399
    • Durand, M.1    Thuong, N.T.2    Maurizot, J.C.3
  • 184
    • 0028174987 scopus 로고
    • Interaction of Hoechst 33258 with a DNA triple helix
    • Durand, M., Thuong, N. T., and Maurizot, J. C. (1994) Interaction of Hoechst 33258 with a DNA triple helix Biochemie 76, 181-186
    • (1994) Biochemie , vol.76 , pp. 181-186
    • Durand, M.1    Thuong, N.T.2    Maurizot, J.C.3
  • 186
    • 0000448918 scopus 로고
    • Ligand binding to the Hoogsteen-WC groove of TAT base triplets: Thermodynamic contribution of the thymine methyl group
    • Rentzeperis, D. and Marky, L. A. (1995) Ligand binding to the Hoogsteen-WC groove of TAT base triplets: thermodynamic contribution of the thymine methyl group J. Am. Chem. Soc. 117, 5423-5424
    • (1995) J. Am. Chem. Soc. , vol.117 , pp. 5423-5424
    • Rentzeperis, D.1    Marky, L.A.2
  • 189
    • 0022587259 scopus 로고
    • Non-intercalating DNA-binding ligands: Specificity of the interaction and their use as tools in biophysical, biochemical and biological investigations of the genetic materials
    • Zimmer, Ch. and Wahnert, U. (1986) Non-intercalating DNA-binding ligands: specificity of the interaction and their use as tools in biophysical, biochemical and biological investigations of the genetic materials Prog. Biophys. Mol. Biol. 41, 31-112
    • (1986) Prog. Biophys. Mol. Biol. , vol.41 , pp. 31-112
    • Zimmer, Ch.1    Wahnert, U.2
  • 190
    • 0027998326 scopus 로고
    • Berenil complexation with a nucleic acid triple helix
    • Durand, M., Thuong, N. T., and Maurizot, J. C. (1994) Berenil complexation with a nucleic acid triple helix J. Biomol. Struct. Dyn. 11, 1191-1202
    • (1994) J. Biomol. Struct. Dyn. , vol.11 , pp. 1191-1202
    • Durand, M.1    Thuong, N.T.2    Maurizot, J.C.3
  • 191
    • 0028446579 scopus 로고
    • The interaction of intercalators and groove-binding agents with DNA triple-helical structures: The influence of ligand structure, DNA backbone modifications and sequence
    • Wilson, W. D., Mizan, S., Tanious, F. A., and Yao, S. (1994) The interaction of intercalators and groove-binding agents with DNA triple-helical structures: the influence of ligand structure, DNA backbone modifications and sequence J. Mol. Recognit. 7, 89-98
    • (1994) J. Mol. Recognit. , vol.7 , pp. 89-98
    • Wilson, W.D.1    Mizan, S.2    Tanious, F.A.3    Yao, S.4
  • 192
    • 0030032804 scopus 로고    scopus 로고
    • Influence of GC and at specific DNA minor groove binding drugs on intermolecular triplex formation in the human c-Ki-ras promoter
    • Vigneswaran, N., Mayfield, C. A., Rodu, B., James, R., Kim, H.-G., and Miller, D. M. (1996) Influence of GC and AT specific DNA minor groove binding drugs on intermolecular triplex formation in the human c-Ki-ras promoter Biochemistry 35, 1106-1114
    • (1996) Biochemistry , vol.35 , pp. 1106-1114
    • Vigneswaran, N.1    Mayfield, C.A.2    Rodu, B.3    James, R.4    Kim, H.-G.5    Miller, D.M.6
  • 193
    • 0027989641 scopus 로고
    • DNase i footprinting of triple helix formation at polypurine tracts by acridine-linked oligopyrimidines: Stringency, structural changes and interaction with minor groove binding ligands
    • Stonehouse, T. J. and Fox, K. R. (1994) DNase I footprinting of triple helix formation at polypurine tracts by acridine-linked oligopyrimidines: stringency, structural changes and interaction with minor groove binding ligands Biochim. Biophys. Acta 1218, 322-330
    • (1994) Biochim. Biophys. Acta , vol.1218 , pp. 322-330
    • Stonehouse, T.J.1    Fox, K.R.2
  • 194
    • 0030995593 scopus 로고    scopus 로고
    • Modulation of nucleic acid structure by ligand binding: Induction of a DNA.RNA.DNA hybrid triplex by DAPI intercalation
    • Xu, Z., Pilch, D. S., Srinivasan, A. R., Olson, W. K., Geacintov, N. E., and Breslauer, K. J. (1997) Modulation of nucleic acid structure by ligand binding: Induction of a DNA.RNA.DNA hybrid triplex by DAPI intercalation Bioorg. Med. Chem. 5, 1137-1147
    • (1997) Bioorg. Med. Chem. , vol.5 , pp. 1137-1147
    • Xu, Z.1    Pilch, D.S.2    Srinivasan, A.R.3    Olson, W.K.4    Geacintov, N.E.5    Breslauer, K.J.6
  • 196
    • 0032212207 scopus 로고    scopus 로고
    • Circular dichroism and UV melting studies on formation of an intramolecular triplex containing parallel T*A:T and G*G:C triplets: Netropsin complexation with the triplex
    • Gondeau, C., Maurizot, J. C., and Durand, M. (1998) Circular dichroism and UV melting studies on formation of an intramolecular triplex containing parallel T*A:T and G*G:C triplets: netropsin complexation with the triplex Nucleic Acids Res. 26, 4996-5003
    • (1998) Nucleic Acids Res. , vol.26 , pp. 4996-5003
    • Gondeau, C.1    Maurizot, J.C.2    Durand, M.3
  • 197
    • 0028142863 scopus 로고
    • Influence of drug binding on DNA hydration: Acoustic and densitometric characterizations of netropsin binding to the Poly(dA-dT)*Poly(dA-dT) and Poly (dA)*Poly (dT) duplexes and the Poly (dT).Poly (dA)*Poly(dT) triplex at 25 °c
    • Chalikian, T. V., Plum, G. E., Sarvazyan, A. P., and Breslauer, K. J. (1994) Influence of drug binding on DNA hydration: acoustic and densitometric characterizations of netropsin binding to the Poly(dA-dT)vPoly(dA-dT) and Poly (dA)*Poly (dT) duplexes and the Poly (dT).Poly (dA)*Poly(dT) triplex at 25 °C Biochemistry 33, 8629-8640
    • (1994) Biochemistry , vol.33 , pp. 8629-8640
    • Chalikian, T.V.1    Plum, G.E.2    Sarvazyan, A.P.3    Breslauer, K.J.4
  • 198
    • 0031854969 scopus 로고    scopus 로고
    • Structure-dependent effects of minor groove binders on the DNA triple helix motif poly(dA).2poly(dT): Influence of antitumor active non-intercalative bisquaternary ammonium heterocycles
    • Fortsch, I., Baguley, B., and Zimmer, C. (1998) Structure-dependent effects of minor groove binders on the DNA triple helix motif poly(dA).2poly(dT): influence of antitumor active non-intercalative bisquaternary ammonium heterocycles Anti-Cancer Drug Des. 13, 417-429
    • (1998) Anti-Cancer Drug Des. , vol.13 , pp. 417-429
    • Fortsch, I.1    Baguley, B.2    Zimmer, C.3
  • 199
    • 0030451151 scopus 로고    scopus 로고
    • Different effects of non-intercalative antitumor drugs on triple helix stability: SN-18071 promotes triple helix formation
    • Fortsch, I., Birch-Hirschfild, E., Schutz, H, and Zimmer, C. (1996) Different effects of non-intercalative antitumor drugs on triple helix stability: SN-18071 promotes triple helix formation J. Biomol. Struct. Dyn. 14, 317-329
    • (1996) J. Biomol. Struct. Dyn. , vol.14 , pp. 317-329
    • Fortsch, I.1    Birch-Hirschfild, E.2    Schutz, H.3    Zimmer, C.4
  • 200
    • 0033958577 scopus 로고    scopus 로고
    • Preferential binding of 3, 3′-diethyloxadicarbocyanine to triplex DNA
    • Ren, J. and Chaires, J. B. (2000) Preferential binding of 3, 3′-diethyloxadicarbocyanine to triplex DNA J. Am. Chem. Soc. 122, 424-425
    • (2000) J. Am. Chem. Soc. , vol.122 , pp. 424-425
    • Ren, J.1    Chaires, J.B.2
  • 201
    • 0028869131 scopus 로고
    • Stabilization of triple-helical nucleic acids by basic oligopeptides
    • Potaman, V. N. and Sinden, R. R. (1995) Stabilization of triple-helical nucleic acids by basic oligopeptides Biochemistry 34, 14885-14892
    • (1995) Biochemistry , vol.34 , pp. 14885-14892
    • Potaman, V.N.1    Sinden, R.R.2
  • 202
    • 0027051914 scopus 로고
    • Site-specific covalent duocarmycin A-intramolecular DNA triplex complex
    • Lin, C. H. and Patel, D. J. (1992) Site-specific covalent duocarmycin A-intramolecular DNA triplex complex J. Am. Chem. Soc. 114, 10658-10660
    • (1992) J. Am. Chem. Soc. , vol.114 , pp. 10658-10660
    • Lin, C.H.1    Patel, D.J.2
  • 203
    • 0027534081 scopus 로고
    • Methyl green A DNA major-groove binding drug
    • Kim, S. K. and Norden, B. (1993) Methyl green A DNA major-groove binding drug FEBS Lett. 315, 61-64
    • (1993) FEBS Lett. , vol.315 , pp. 61-64
    • Kim, S.K.1    Norden, B.2
  • 205
    • 0026316202 scopus 로고
    • Structure of the pure-spermine form of Z-DNA (magnesium free) at 1-A resolution
    • Egli, M., Williams, L. D., Gao, Q., and Rich, A. (1991) Structure of the pure-spermine form of Z-DNA (magnesium free) at 1-A resolution Biochemistry 30, 11388-11402
    • (1991) Biochemistry , vol.30 , pp. 11388-11402
    • Egli, M.1    Williams, L.D.2    Gao, Q.3    Rich, A.4
  • 206
    • 0027743418 scopus 로고
    • Selectivity of polyamines in triplex DNA stabilization
    • Thomas, T. and Thomas, T. J. (1993) Selectivity of polyamines in triplex DNA stabilization Biochemistry 32, 14068-14074
    • (1993) Biochemistry , vol.32 , pp. 14068-14074
    • Thomas, T.1    Thomas, T.J.2
  • 207
    • 0030585344 scopus 로고    scopus 로고
    • DNA Triple helix stabilization by bisguanidinyl analogues of biogenic polyamines
    • Pallan, P. S. and Ganesh, K. N. (1996) DNA Triple helix stabilization by bisguanidinyl analogues of biogenic polyamines Biophys. Biochem. Res. Commun. 222, 416-420
    • (1996) Biophys. Biochem. Res. Commun. , vol.222 , pp. 416-420
    • Pallan, P.S.1    Ganesh, K.N.2
  • 208
    • 0034605181 scopus 로고    scopus 로고
    • DNA triple helix stabilization by aminoglycoside antibiotics
    • Arya, D. P. and Coffee, R. L. (2000) DNA triple helix stabilization by aminoglycoside antibiotics Bioorg. Med. Chem. Lett. 10, 1897-1899
    • (2000) Bioorg. Med. Chem. Lett. , vol.10 , pp. 1897-1899
    • Arya, D.P.1    Coffee, R.L.2
  • 209
    • 0034833770 scopus 로고    scopus 로고
    • Aminoglycoside-nucleic acid interactions: Remarkable stabilization of DNA and RNA triple helices by neomycin
    • Arya, D. P., Coffee, R. L., Jr., Willis, B., and Abramovitch, A. I., (2001) Aminoglycoside-nucleic acid interactions: remarkable stabilization of DNA and RNA triple helices by neomycin J. Am. Chem. Soc. 123, 5385-5395
    • (2001) J. Am. Chem. Soc. , vol.123 , pp. 5385-5395
    • Arya, D.P.1    Coffee Jr., R.L.2    Willis, B.3    Abramovitch, A.I.4
  • 210
    • 0037414294 scopus 로고    scopus 로고
    • Neomycin binding to Watson-Hoogsteen (W-H) DNA triplex groove: A model
    • Arya, D. P., Micovic, L., Charles, I., Jr., Willis, B., and Xue, L. (2003) Neomycin binding to Watson-Hoogsteen (W-H) DNA triplex groove: A model J. Am. Chem. Soc. 125, 3733-3744
    • (2003) J. Am. Chem. Soc. , vol.125 , pp. 3733-3744
    • Arya, D.P.1    Micovic, L.2    Charles Jr., I.3    Willis, B.4    Xue, L.5
  • 211
    • 0037033436 scopus 로고    scopus 로고
    • Pyrene-neomycin conjugate: Dual recognition of a DNA triple helix
    • Xue, L., Charles, I., and Arya, D. P. (2002) Pyrene-neomycin conjugate: dual recognition of a DNA triple helix Chem. Commun. 70-71
    • (2002) Chem. Commun. , pp. 70-71
    • Xue, L.1    Charles, I.2    Arya, D.P.3
  • 212
    • 0038682830 scopus 로고    scopus 로고
    • Combining the best in triplex recognition: Synthesis and nucleic acid binding of a BQQ-neomycin conjugate
    • Arya, D. P., Xue, L., and Tennant, P. (2003) Combining the best in triplex recognition: Synthesis and nucleic acid binding of a BQQ-neomycin conjugate J. Am. Chem. Soc. 125, 8070-8071
    • (2003) J. Am. Chem. Soc. , vol.125 , pp. 8070-8071
    • Arya, D.P.1    Xue, L.2    Tennant, P.3
  • 213
    • 0037029803 scopus 로고    scopus 로고
    • Synthesis of aminoglycoside-DNA conjugates
    • Charles, I., Xue, L., and Arya, D. P. (2002) Synthesis of aminoglycoside-DNA conjugates Bioorg. Med. Chem. Lett. 12, 1259-1262
    • (2002) Bioorg. Med. Chem. Lett. , vol.12 , pp. 1259-1262
    • Charles, I.1    Xue, L.2    Arya, D.P.3
  • 214
    • 0141919831 scopus 로고    scopus 로고
    • Reaching into the major groove of B-DNA: Synthesis and nucleic acid binding of a neomycin-Hoechst 33258 conjugate
    • Arya, D. P. and Willis, B. (2003) Reaching into the major groove of B-DNA: Synthesis and nucleic acid binding of a neomycin-Hoechst 33258 conjugate J. Am. Chem. Soc. 125, 12398-12399
    • (2003) J. Am. Chem. Soc. , vol.125 , pp. 12398-12399
    • Arya, D.P.1    Willis, B.2
  • 215
    • 22144496837 scopus 로고    scopus 로고
    • Recognition of triple helical nucleic acids by aminoglycosides
    • Xi, H. and Arya, D. P. (2005) Recognition of triple helical nucleic acids by aminoglycosides Curr. Med. Chem. Anti-cancer Agents 5, 327-538
    • (2005) Curr. Med. Chem. Anti-cancer Agents , vol.5 , pp. 327-538
    • Xi, H.1    Arya, D.P.2
  • 216
    • 0027451487 scopus 로고
    • Polyamine-linked oligonucleotides for DNA triple helix formation
    • Tung, C. H., Breslauer, K. J., and Stein, S. (1993) Polyamine-linked oligonucleotides for DNA triple helix formation Nucleic Acids Res. 21, 5489-5494
    • (1993) Nucleic Acids Res. , vol.21 , pp. 5489-5494
    • Tung, C.H.1    Breslauer, K.J.2    Stein, S.3
  • 217
    • 0030013003 scopus 로고    scopus 로고
    • Cooperative triple-helix formation via a minor groove dimerization domain
    • Szewczyk, J. W., Baird, E. E., and Derven, P. B. (1996) Cooperative triple-helix formation via a minor groove dimerization domain J. Am. Chem. Soc. 118, 6778-6779
    • (1996) J. Am. Chem. Soc. , vol.118 , pp. 6778-6779
    • Szewczyk, J.W.1    Baird, E.E.2    Derven, P.B.3
  • 218
    • 0030875197 scopus 로고    scopus 로고
    • DNA triplex stabilization using a tethered minor groove binding Hoechst analogue
    • Robles, J. and McLaughlin, L. W. (1997) DNA triplex stabilization using a tethered minor groove binding Hoechst analogue J. Am. Chem. Soc. 119, 6014-6021
    • (1997) J. Am. Chem. Soc. , vol.119 , pp. 6014-6021
    • Robles, J.1    McLaughlin, L.W.2
  • 219
    • 33747095383 scopus 로고    scopus 로고
    • Triple helix stabilization by covalently linked DNA-bisbenzimidazole conjugate synthesized by maleimide-thiol coupling chemistry
    • Jain, A. K., Awasthi, S. K., and Tandon, V. (2006) Triple helix stabilization by covalently linked DNA-bisbenzimidazole conjugate synthesized by maleimide-thiol coupling chemistry Bioorg. Med. Chem. 14, 6444-6452
    • (2006) Bioorg. Med. Chem. , vol.14 , pp. 6444-6452
    • Jain, A.K.1    Awasthi, S.K.2    Tandon, V.3
  • 220
    • 1642374335 scopus 로고    scopus 로고
    • Solid phase synthesis of positively charged deoxynucleic guanidine (DNG) tethering a Hoechst 33258 analogue: Triplex and duplex stabilization by simultaneous minor groove binding
    • Reddy, P. M. and Bruice, T. C. (2004) Solid phase synthesis of positively charged deoxynucleic guanidine (DNG) tethering a Hoechst 33258 analogue: triplex and duplex stabilization by simultaneous minor groove binding J. Am. Chem. Soc. 125, 3736-3747
    • (2004) J. Am. Chem. Soc. , vol.125 , pp. 3736-3747
    • Reddy, P.M.1    Bruice, T.C.2
  • 221
    • 12344301295 scopus 로고    scopus 로고
    • Extended target sequence specificity of PNA-minor-groove binder conjugates
    • Nielsen, P. E., Frederiksen, K., and Behrens, C. (2005) Extended target sequence specificity of PNA-minor-groove binder conjugates ChemBioChem 6, 66-68
    • (2005) ChemBioChem , vol.6 , pp. 66-68
    • Nielsen, P.E.1    Frederiksen, K.2    Behrens, C.3
  • 222
    • 0035263734 scopus 로고    scopus 로고
    • Stabilization of DNA triple helices using conjugates of oligonucleotides and synthetic ligands
    • Sinyakov, A. N., Ryabinin, V. A., Grimm, G. N., and Boutorine, A. S. (2001) Stabilization of DNA triple helices using conjugates of oligonucleotides and synthetic ligands Mol. Biol. (Moscow) 35, 251-260
    • (2001) Mol. Biol. (Moscow) , vol.35 , pp. 251-260
    • Sinyakov, A.N.1    Ryabinin, V.A.2    Grimm, G.N.3    Boutorine, A.S.4


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