Parallel-stranded duplex DNA containing dA-dU base pairs

Biopolymers

Volumn 38, Issue 2, 1996, Pages 209-220

  Förtsch, Ingo ^a   Fritzsche, Hartmut ^a   Birch Hirschfeld, Eckhard ^b   Evertsz, Elisabeth ^c   Klement, Reinhard ^c   Jovin, Thomas M ^c   Zimmer, Christoph ^a  

^a FRIEDRICH SCHILLER UNIVERSITY JENA   (Germany)

^b FRITZ LIPMANN INSTITUTE   (Germany)

^c MAX PLANCK INSTITUTE FOR BIOPHYSICAL CHEMISTRY   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

DOUBLE STRANDED DNA; NUCLEASE;

ARTICLE; BASE PAIRING; DNA CONFORMATION; ENERGY TRANSFER; MATHEMATICAL ANALYSIS; MOLECULAR STABILITY; NUCLEIC ACID BASE SUBSTITUTION; STRUCTURE ANALYSIS; THERMODYNAMICS;

BASE COMPOSITION; BASE SEQUENCE; BINDING SITES; DEOXYRIBONUCLEASES; DNA; MODELS, MOLECULAR; MOLECULAR SEQUENCE DATA; NUCLEIC ACID CONFORMATION; PYRENES; SPECTROMETRY, FLUORESCENCE; SPECTRUM ANALYSIS;

EID: 0030060839     PISSN: 00063525     EISSN: None     Source Type: Journal    
DOI: 10.1002/(sici)1097-0282(199602)38:2<209::aid-bip7>3.0.co;2-z     Document Type: Article

References (34)

1. Ramsing, N. B. & Jovin, T. M. (1988) Nucleic Acids Res. 16, 6659-6676.
2. Rippe, K., Ramsing, N. B. & Jovin, T. M. (1989) Biochemistry 28, 9536-9541.
3. Ramsing, N. B., Rippe, K. & Jovin, T. M. (1989) Biochemistry 28, 9528-9535.
4. Rippe, K. & Jovin, T. M. (1989) Biochemistry 28, 9542-9549.
5. Rippe, K., Ramsing, N. B., Klement, R. & Jovin, T. M. (1990) J. Biomol. Struct. Dynam. 7, 1199-1209.
6. Rippe, K. & Jovin, T. M. (1992) Methods Enzymol 211, 199-220.
7. van de Sande, J. H., Ramsing, N. B., German, M. W., Elhorst, W., Kalisch, B. W., v. Kitzing, E., Pon, R. T., Clegg, R. M. & Jovin, T. M. (1988) Science 241, 551-557.
8. Otto, C, Thomas, G. A., Rippe, K., Jovin, T. M. & Peticolas, W. L. (1991) Biochemistry 30, 3062-3069.
9. Fritzsche, H., Akhebat, A., Taillandier, E., Rippe, K. & Jovin, T. M. (1993) Nucleic Acids Res. 21, 5085-5091.
10. Pattabiraman, N. (1986) Biopolymers 25, 1603-1606.
11. Kuryavyi, V. V. (1987) Molek. Biol. (Russ.) 21, 1486-1496.
12. Rippe, K., Fritsch, V., Westhof, E. & Jovin, T. M. (1992)EMBO J. 11, 3777-3786.
13. Rentzeperis, D., Rippe, K., Jovin, T. M. & Marky, L. A. (1992) J. Am. Chem. Soc. 114, 5926-5928.
14. Tchurikov, N. A., Shchyolkina, A. K., Borissova, O.F. & Chernov, B. K. (1992) FEBS Lett. 297, 233-236.
15. Shchyolkina, A. K., Borissova, O. F., Chernov, B. K. & Tchurikov, N. A. (1994) J. Biomol. Struct. Dynam. 11, 1237-1249.
16. Garcia, A. E., Soumpasis, D. M. & Jovin, T. M. (1994) Biophys. J. 66, 1742-1755.
17. Evertsz, E. M., Rippe, K. & Jovin, T. M. (1994) Nucleic Acids Res. 22, 3293-3303.
18. Robinson, H., van Boom, J. H. & Wang, A. H.-J. (1994) J. Am. Chem. Soc. 116, 1565-1566.
19. Liu, K., Miles, H. T., Frazier, J. & Sasisekharan, V. (1993)Biochemistry 32, 11802-11809.
20. Kang, C. H., Berger, I., Lockshin, C., Ratliff, R., Moyzis, R. & Rich, A. (1994) Proc. Natl Acad. Sci. USA 91, 11636-11640.
21. Gehring, K., Leroy, J.-L. & Guéron, M. (1993) Nature 363, 561-565.
22. Pearlman, D. A., Case, D. A., Caldwell, J. C., Seibel, G. L., Singh, U. C, Weiner, P. & Kollman, P. A. (1991) AMBER 4.0, University of California, San Francisco.
23. Connoly, M. L. (1983) Science 221, 709-713.
24. Soumpasis, D. M. & Tung, C. S. (1988) J. Biomol. Struct. Dynam, 6, 397-420.
25. Zmudzka, B., Bollum, F. J. & Shugar, D. (1969) J. Mol. Biol. 46, 169-183.
26. Fasman, G. D., Ed. (1975) Handbook of Biochemistry and Molecular Biology, 3rd Ed., Nucleic Acids-Vol. I. CRC Press, Cleveland, OH, p. 575.
27. Dapprich, J. (1994) Ph.D. thesis, Georg-August University, Göttingen, Germany.
28. Jovin, T. M., Rippe, K., Ramsing, N. B., Klement, R., Elhorst, W. & Vojtišková, M. (1990) in Structure & Methods, Vol. 3: DNA & RNA, Sarma, R. H. & Sarma, M. H., Eds., Adenine Press, Schenectady, NY,pp. 155-174.
29. Zimmer, Ch., Kakiuchi, N. & Guschlbauer, W. (1982) Nucleic Acids Res. 10, 1721-1732.
30. Steely, H. T., Gray, D. M. & Ratliff, R. L. (1986) Nucleic Acids Res. 24, 10071-10090.
31. Gray, D. M., Ratliff, R. L. & Vaughan, M. R. (1992) Methods Enzymol. 211, 389-406.
32. Campbell, V. W. & Jackson, D. A. (1979) J. Biol. Chem. 255, 3726-3735.
33. Sucle, D., Lahm, A. & Oefer, C. (1988) Nature 332, 464-468.
34. Seeman, N. C., Rosenberg, J. M. & Rich, A. (1976) Proc. Natl. Acad. Sci. USA 73, 804-808.