Modulation of nucleic acid structure by ligand binding: Induction of a DNA·RNA·DNA hybrid tripler by DAPI intercalation

Bioorganic and Medicinal Chemistry

Volumn 5, Issue 6, 1997, Pages 1137-1147

  Xu, Zhitao ^a   Pilch, Daniel S ^a,b,c   Srinivasan, A R ^a   Olson, Wilma K ^a   Geacintov, Nicholas E ^d   Breslauer, Kenneth J ^a,c  

^a RUTGERS UNIVERSITY   (United States)

^b RUTGERS ROBERT WOOD JOHNSON MEDICAL SCHOOL   (United States)

^c RUTGERS CANCER INSTITUTE OF NEW JERSEY   (United States)

^d NEW YORK UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

POLYADENYLIC ACID; POLYTHYMIDYLIC ACID;

CONFERENCE PAPER; DNA BINDING; DNA RNA HYBRIDIZATION; LIGAND BINDING; LINEAR DICHROISM; MODULATION; MOLECULAR MODEL; NUCLEIC ACID STRUCTURE; TRIPLE HELIX;

CALORIMETRY, DIFFERENTIAL SCANNING; CHEMISTRY, PHYSICAL; DNA; DRUG STABILITY; FLUORESCENT DYES; HEATING; INDOLES; INTERCALATING AGENTS; LIGANDS; NUCLEIC ACID CONFORMATION; NUCLEIC ACID DENATURATION; NUCLEIC ACID HYBRIDIZATION; OLIGODEOXYRIBONUCLEOTIDES; POLY A; RNA; SPECTROPHOTOMETRY, ULTRAVIOLET;

EID: 0030995593     PISSN: 09680896     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0968-0896(97)00050-3     Document Type: Conference Paper

References (70)

1. Wells, R. D.; Collier, D. A.; Hanvey, J. C.; Shimizu, M.; Wohlrab, F. FASEB. J. 1988, 2, 2939.
2. Hélène, C.; Toulmé, J.-J. Biochim. Biophys. Acta 1990, 1049, 99.
3. Hélène, C.; Sun, J.-S.; François, J.-C.; Saison-Behmoaras, T.; Montenay-Garestier, T.; Asseline, U.; Thuong, N. T. In Structure & Methods, Volume 1: Human Genome Initiative & DNA Recombination; Sarma, R. H.; Sarma, M. H., Eds.; Adenine: Schenectady, 1990; p 51.
4. Hélène, C.; François, J.-C.; Giovannangeli, C.; Saison-Behmoaras, T.; Asseline, U.; Thuong, N. T. In Molecular Basis of Specificity in Nucleic Acid-Drug Interactions; Pullman, B.; Jortner, J., Eds.; Kluwer Academic: Netherlands, 1990; p 291.
5. Hélène, C. Anti-Cancer Drug Des. 1991, 6, 569.
6. Thuong, N. T.; Hélène, C. Angew. Chem. Int. Ed. Engl. 1993, 32, 666.
7. Radhakrishnan, I.; Patel, D. J. Biochemistry 1994, 33, 11405.
8. Hélène, C.; Thuong, N. T.; Harel-Bellan, A. Ann. N.Y. Acad. Sci. 1992, 660, 27.
9. Minton, K. W. J. Exp. Pathol. 1985, 2, 135.
10. Cooney, M.; Czernuszewicz, G.; Postel, E. H.; Flint, S. J.; Hogan, M. E. Science 1988, 241, 456.
11. Birg, F.; Praseuth, D.; Zerial, A.; Thuong, N. T.; Asseline, U.; Le Doan, T.; Hélène, C. Nucleic Acids Res. 1990, 18, 2901.
12. Kohwi, Y.; Kohwi-Shigematsu, T. Genes Devel. 1991, 5, 2547.
13. Duval-Valentin, G.; Thuong, N. T.; Hélène, C. Proc. Natl. Acad. Sci. U.S.A. 1992, 89, 504.
14. Maher III, L. J.; Dervan, P. B.; Wold, B. Biochemistry 1992, 31, 70.
15. Grigoriev, M.; Praseuth, D.; Robin, P.; Hemar, A.; Saison-Behmoaras, T.; Dautry-Varsat, A.; Thuong, N. T.; Hélène, C.; Harel-Bellan, A. J. Biol. Chem. 1992, 267, 3389.
16. Volkmann, S.; Dannull, J.; Moelling, K. Biochimie 1993, 75, 71.
17. Skoog, J. U.; Maher III, L. J. Nucleic Acids Res. 1993, 21, 2131.
18. Moser, H. E.; Dervan, P. B. Science 1987, 238, 645.
19. Strobel, S. A.; Moser, H. E.; Dervan, P. B. J. Am. Chem. Soc. 1988, 110, 7927.
20. Boidot-Forget, M.; Chassignol, M.; Takasugi, M.; Thuong, N. T.; Hélène, C. Gene 1988, 72, 361.
21. François, J.-C.; Saison-Behmoaras, T.; Barbier, C.; Chassignol, M.; Thuong, N. T.; Hélène, C. Proc. Natl. Acad. Sci. U.S.A. 1989, 86, 9702.
22. François, J.-C.; Saison-Behmoaras, T.; Chassignol, M.; Thuong, N. T.; Hélène, C. J. Biol. Chem. 1989, 264, 5891.
23. Hélène, C.; Thuong, N. T.; Saison-Behmoaras, T.; François, J.-C. Trends Biotech. 1989, 7, 310.
24. Perrouault, L.; Asseline, U.; Rivalle, C.; Thuong, N. T.; Bisagni, E.; Giovannangeli, C.; Le Doan, T.; Hélène, C. Nature (London) 1990, 344, 358.
25. Strobel, S. A.; Doucette-Stamm, L. A.; Riba, L.; Housman, D. E.; Dervan, P. B. Science 1991, 254, 1639.
26. Shimizu, M.; Inoue, H.; Ohtsuka, E. Biochemistry 1994, 33, 606.
27. Roberts, R. W.; Crothers, D. M. Science 1992, 258, 1463.
28. Han, H.; Dervan, P. B. Proc. Natl. Acad. Sci. U.S.A. 1993, 90, 3806.
29. Escudé, C.; François, J.-C.; Sun, J.-S.; Ott, G.; Sprinzl, M.; Garestier, T.; Hélène, C. Nucleic Acids Res. 1993, 21, 5547.
30. Pilch, D. S.; Breslauer, K. J. Proc. Natl. Acad. Sci. U.S.A. 1994, 91, 9332.
31. Job, P. Ann. Chim., Fr. 1928, 9, 113.
32. Riley, M.; Maling, B.; Chamberlin, M. J. J. Mol. Biol. 1966, 20, 359.
33. Chou, W.-Y. Ph.D. Thesis, Rutgers - The State University of New Jersey, New Brunswick, 1990.
34. Breslauer, K. J.; Freire, E.; Straume, M. Meth. Enzymol. 1992, 211, 533.
35. Pilch, D. S.; Kirolos, M. A.; Breslauer, K. J. Biochemistry 1995, 34, 16107.
36. Marky, L. A.; Snyder, J. G.; Remeta, D.; Breslauer, K. J. J. Biomol. Struct. Dyn. 1983, 1, 487.
37. Marky, L. A.; Snyder, J. G.; Breslauer, K. J. Nucleic Acids Res. 1983, 11, 5701.
38. Chou, W. Y.; Marky, L. A.; Zaunczkowski, D.; Breslauer, K. J. J. Biomol. Struct. Dyn. 1987, 5, 345.
39. Park, Y.-W.; Breslauer, K. J. Proc. Natl. Acad. Sci. U.S.A. 1992, 89, 6653.
40. Park, Y.-W. Ph.D. Thesis, Rutgers - The State University of New Jersey, New Brunswick, 1992.
41. Pilch, D. S.; Kirolos, M. A.; Liu, X.; Plum, G. E.; Breslauer, K. J. Biochemistry 1995, 34, 9962.
42. Nordén, B. Appl. Spectrosc. Rev. 1978, 14, 157.
43. Wilson, R. W.; Schellman, J. A. Biopolymers 1978, 17, 1235.
44. Geacintov, N. E.; Ibanez, V.; Rougée, M.; Bensasson, R. V. Biochemistry 1987, 26, 3087.
45. Wilson, W. D.; Tanious, F. A.; Barton, H. J.; Jones, R. L.; Fox, K.; Wydra, R. L.; Strekowski, L. Biochemistry 1990, 29, 8452.
46. Tanious, F. A.; Veal, J. M.; Buczak, H.; Ratmeyer, L. S.; Wilson, W. D. Biochemistry 1992, 31, 3103.
47. Sehlstedt, U.; Kim, S. K.; Nordén, B. J. Am. Chem. Soc. 1993, 115, 12258.
48. Kim, H.-K.; Kim, J.-M.; Kim, S. K.; Rodger, A.; Nordén, B. Biochemistry 1996, 35, 1187.
49. Eriksson, S.; Kim, S. K.; Kubista, M.; Nordén, B. Biochemistry 1993, 32, 2987.
50. Bloomfield, V. A.; Crothers, D. M.; Tinoco Jr., I. Physical Chemistry of Nucleic Acids; Harper pp 442-445.
51. Stein, C. A.; Cohen, J. S. Cancer Res. 1988, 48, 2659.
52. Toulmé, J.-J.; Hélène, C. Gene 1988, 72, 51.
53. Kohlstaedt, L. A.; Wang, J.; Friedman, J. M.; Rice, P. A.; Steitz, T. A. Science 1992, 256, 1783.
54. Marky, L. A.; Breslauer, K. J. Biopolymers 1987, 26, 1601.
55. Breslauer, K. J. In Thermodynamic Data for Biochemistry and Biotechnology; Heinz, H.-J., Eds.; Springer: New York, 1986; pp 402-427.
56. Breslauer, K. J. In Methods in Molecular Biology, Vol. 26: Protocols for Oligonucleotide Conjugates; Agrawal, S., Eds.; Humana: Totowa, 1994; pp 347-372.
57. Breslauer, K. J. Meth. Enzymol. 1995, 259, 221.
58. Srinivasan, A. R.; Olson, W. K. J. Biomol. Struct. Dyn. 1987, 4, 895.
59. Srinivasan, A. R.; Olson, W. K. Nucleic Acids Res. 1997, submitted.
60. Arnott, S.; Bond, P. J.; Selsing, E.; Smith, P. J. C. Nucleic Acids Res. 1976, 3, 2459.
61. Berman, H. M.; Young, P. R. Annu. Rev. Biophys. Bioeng. 1981, 10, 87.
62. Crawford, L. V.; Waring, M. J. J. Mol. Biol. 1967, 25, 23.
63. Bauer, W.; Vinograd, J. J. Mol. Biol. 1968, 33, 141.
64. Keller, W. Proc. Natl. Acad. Sci. U.S.A. 1975, 72, 4876.
65. Larsen, T. A.; Goodsell, D. S.; Cascio, D.; Grzeskowiak, K.; Dickerson, R. E. J. Biomol. Struct. Dyn. 1989, 7, 477.
66. Pearlman, D. A.; Kim, S.-H. J. Mol. Biol. 1990, 211, 171.
67. Stewart, J. J. P. J. Comput. Chem. 1989, 10, 209.
68. Manning, G. S. Q. Rev. Biophys. 1978, 11, 179.
69. Record, M. T., Jr.; Anderson, C. F.; Lohman, T. M. Q. Rev. Biophys. 1978, 11, 103.
70. Srinivasan, A. R.; Olson, W. K. Fed. Proc. 1980, 39, 2199.