-
1
-
-
0030911051
-
Cross-intron bridging interactions in the yeast commitment complex are conserved in mammals
-
Abovich, N. and Rosbash, M. (1997). Cross-intron bridging interactions in the yeast commitment complex are conserved in mammals. Cell 89, 403-412.
-
(1997)
Cell
, vol.89
, pp. 403-412
-
-
Abovich, N.1
Rosbash, M.2
-
3
-
-
18344396487
-
Lsm proteins and RNA processing
-
Beggs, J. D. (2005). Lsm proteins and RNA processing. Biochem. Soc. Trans. 33, 433-438.
-
(2005)
Biochem. Soc. Trans.
, vol.33
, pp. 433-438
-
-
Beggs, J.D.1
-
4
-
-
33748173310
-
Functional spliceosomal A complexes can be assembled in vitro in the absence of a penta-snRNP
-
Behzadnia, N., Hartmuth, K., Will, C. L. and Lührmann, R. (2006). Functional spliceosomal A complexes can be assembled in vitro in the absence of a penta-snRNP. RNA 12, 1738-1746.
-
(2006)
RNA
, vol.12
, pp. 1738-1746
-
-
Behzadnia, N.1
Hartmuth, K.2
Will, C.L.3
Lührmann, R.4
-
5
-
-
0036591882
-
The mrna assembly line: Transcription and processing machines in the same factory
-
Bentley, D. (2002). The mrna assembly line: transcription and processing machines in the same factory. Curr. Opin. Cell. Biol. 14, 336-342.
-
(2002)
Curr. Opin. Cell. Biol.
, vol.14
, pp. 336-342
-
-
Bentley, D.1
-
6
-
-
0032521186
-
A cooperative interaction between U2AF65 and mBBP/SF1 facilitates branchpoint region recognition
-
Berglund, J. A., Abovich, N. and Rosbash, M. (1998). A cooperative interaction between U2AF65 and mBBP/SF1 facilitates branchpoint region recognition. Genes Dev. 12, 858-867.
-
(1998)
Genes Dev.
, vol.12
, pp. 858-867
-
-
Berglund, J.A.1
Abovich, N.2
Rosbash, M.3
-
7
-
-
2342539773
-
Threedimensional structure of a pre-catalytic human spliceosomal complex B
-
Boehringer, D., Makarov, E. M., Sander, B., Makarova, O. V., Kastner, B., Lührmann, R. and Stark, H. (2004). Threedimensional structure of a pre-catalytic human spliceosomal complex B. Nat. Struct. Mol. Biol. 11, 463-468.
-
(2004)
Nat. Struct. Mol. Biol.
, vol.11
, pp. 463-468
-
-
Boehringer, D.1
Makarov, E.M.2
Sander, B.3
Makarova, O.V.4
Kastner, B.5
Lührmann, R.6
Stark, H.7
-
8
-
-
44949091262
-
Comparative analysis of sequence features involved in the recognition of tandem splice sites
-
Bortfeldt, R., Schindler, S., Szafranski, K., Schuster, S. and Holste, D. (2008). Comparative analysis of sequence features involved in the recognition of tandem splice sites. BMC Genomics 9, 202.
-
(2008)
BMC Genomics
, vol.9
, pp. 202
-
-
Bortfeldt, R.1
Schindler, S.2
Szafranski, K.3
Schuster, S.4
Holste, D.5
-
9
-
-
0034716987
-
EST comparison indicates 38% of human mRNAs contain possible alternative splice forms
-
Brett, D., Hanke, J., Lehmann, G., Haase, S., Delbrück, S., Krueger, S., Reich, J. and Bork, P. (2000). EST comparison indicates 38% of human mRNAs contain possible alternative splice forms. FEBS Lett. 474, 83-86.
-
(2000)
FEBS Lett.
, vol.474
, pp. 83-86
-
-
Brett, D.1
Hanke, J.2
Lehmann, G.3
Haase, S.4
Delbrück, S.5
Krueger, S.6
Reich, J.7
Bork, P.8
-
10
-
-
0036948420
-
Allosteric cascade of spliceosome activation
-
Brow, D. A. (2002). Allosteric cascade of spliceosome activation. Annu. Rev. Genet. 36, 333-360.
-
(2002)
Annu. Rev. Genet.
, vol.36
, pp. 333-360
-
-
Brow, D.A.1
-
11
-
-
0027287852
-
A mechanism to enhance mRNA splicing fidelity: The RNA-dependent ATPase Prp16 governs usage of a discard pathway for aberrant lariat intermediates
-
Burgess, S. M. and Guthrie, C. (1993). A mechanism to enhance mRNA splicing fidelity: the RNA-dependent ATPase Prp16 governs usage of a discard pathway for aberrant lariat intermediates. Cell 73, 1377-1391.
-
(1993)
Cell
, vol.73
, pp. 1377-1391
-
-
Burgess, S.M.1
Guthrie, C.2
-
12
-
-
0032493734
-
A serine/arginine-rich domain in the human U1 70k protein is necessary and sufficient for ASF/SF2 binding
-
Cao, W. and Garcia-Blanco, M. A. (1998). A serine/arginine-rich domain in the human U1 70k protein is necessary and sufficient for ASF/SF2 binding. J. Biol. Chem. 273, 20629-20635.
-
(1998)
J. Biol. Chem.
, vol.273
, pp. 20629-20635
-
-
Cao, W.1
Garcia-Blanco, M.A.2
-
13
-
-
34548302044
-
Petri net modelling of biological networks
-
Chaouiya, C. (2007). Petri net modelling of biological networks. Brief. Bioinform. 8, 210-219.
-
(2007)
Brief. Bioinform.
, vol.8
, pp. 210-219
-
-
Chaouiya, C.1
-
14
-
-
0035105921
-
Specific alterations of U1-C protein or U1 small nuclear RNA can eliminate the requirement of Prp28p, an essential DEAD box splicing factor
-
Chen, J. Y.-F., Stands, L., Staley, J. P., Jackups, R. R., Latus, L. J. and Chang, T.-H. (2001). Specific alterations of U1-C protein or U1 small nuclear RNA can eliminate the requirement of Prp28p, an essential DEAD box splicing factor. Mol. Cell. 7, 227-232.
-
(2001)
Mol. Cell.
, vol.7
, pp. 227-232
-
-
Chen, J.Y.-F.1
Stands, L.2
Staley, J.P.3
Jackups, R.R.4
Latus, L.J.5
Chang, T.-H.6
-
15
-
-
34547647038
-
Proteomic analysis of in vivo-assembled pre-mRNA splicing complexes expands the catalog of participating factors
-
Chen, Y.-I. G., Moore, R. E., Ge, H. Y., Young, M. K., Lee, T. D. and Stevens, S. W. (2007). Proteomic analysis of in vivo-assembled pre-mRNA splicing complexes expands the catalog of participating factors. Nucleic Acids Res. 35, 3928-3944.
-
(2007)
Nucleic Acids Res.
, vol.35
, pp. 3928-3944
-
-
Chen, Y.-I.G.1
Moore, R.E.2
Ge, H.Y.3
Young, M.K.4
Lee, T.D.5
Stevens, S.W.6
-
16
-
-
0000490505
-
A review of classification
-
Cormack, R. M. (1971). A review of classification. J. R. Stat. Soc. 134, 321-367.
-
(1971)
J. R. Stat. Soc.
, vol.134
, pp. 321-367
-
-
Cormack, R.M.1
-
17
-
-
0029089334
-
A U6 snRNA:pre-mRNA interaction can be rate-limiting for U1-independent splicing
-
Crispino, J. D. and Sharp, P. A. (1995). A U6 snRNA:pre-mRNA interaction can be rate-limiting for U1-independent splicing. Genes Dev. 9, 2314-2323.
-
(1995)
Genes Dev.
, vol.9
, pp. 2314-2323
-
-
Crispino, J.D.1
Sharp, P.A.2
-
18
-
-
0029949594
-
Cis-acting elements distinct from the 5' splice site promote U1-independent pre-mRNA splicing
-
Crispino, J. D., Mermoud, J. E., Lamond, A. I. and Sharp, P. A. (1996). Cis-acting elements distinct from the 5' splice site promote U1-independent pre-mRNA splicing. RNA 2, 664-673.
-
(1996)
RNA
, vol.2
, pp. 664-673
-
-
Crispino, J.D.1
Mermoud, J.E.2
Lamond, A.I.3
Sharp, P.A.4
-
19
-
-
0033636518
-
Functional association of U2 snRNP with the ATP-independent spliceosomal complex e
-
Das, R., Zhou, Z. and Reed, R. (2000). Functional association of U2 snRNP with the ATP-independent spliceosomal complex E. Mol. Cell. 5, 779-787.
-
(2000)
Mol. Cell.
, vol.5
, pp. 779-787
-
-
Das, R.1
Zhou, Z.2
Reed, R.3
-
20
-
-
0033838148
-
The RNA-binding protein TIA-1 is a novel mammalian splicing regulator acting through intron sequences adjacent to a 5' splice site
-
Del Gatto-Konczak, F., Bourgeois, C. F., Le Guiner, C., Kister, L., Gesnel, M.-C., St Évenin, J. and Breathnach, R. (2000). The RNA-binding protein TIA-1 is a novel mammalian splicing regulator acting through intron sequences adjacent to a 5' splice site. Mol. Cell. Biol. 20, 6287-6299
-
(2000)
Mol. Cell. Biol.
, vol.20
, pp. 6287-6299
-
-
Del Gatto-Konczak, F.1
Bourgeois, C.F.2
Le Guiner, C.3
Kister, L.4
Gesnel, M.-C.5
St Évenin, J.6
Breathnach, R.7
-
21
-
-
33846665912
-
The 5' end of U2 snRNA is in close proximity to U1 and functional sites of the pre-mRNA in early spliceosomal complexes
-
Dönmez, G., Hartmuth, K., Kastner, B., Will, C. L. and Lührmann, R. (2007). The 5' end of U2 snRNA is in close proximity to U1 and functional sites of the pre-mRNA in early spliceosomal complexes. Mol. Cell. 25, 399-411.
-
(2007)
Mol. Cell.
, vol.25
, pp. 399-411
-
-
Dönmez, G.1
Hartmuth, K.2
Kastner, B.3
Will, C.L.4
Lührmann, R.5
-
22
-
-
0037026523
-
The U1 snRNP protein U1C recognizes the 5' splice site in the absence of base pairing
-
Du, H. and Rosbash, M. (2002). The U1 snRNP protein U1C recognizes the 5' splice site in the absence of base pairing. Nature 419, 86-90.
-
(2002)
Nature
, vol.419
, pp. 86-90
-
-
Du, H.1
Rosbash, M.2
-
23
-
-
33645212088
-
U2 snRNA-protein contacts in purified human 17S U2 snRNPs and in spliceosomal A and B complexes
-
Dybkov, O., Will, C. L., Deckert, J., Behzadnia, N., Hartmuth, K. and Lührmann, R. (2006). U2 snRNA-protein contacts in purified human 17S U2 snRNPs and in spliceosomal A and B complexes. Mol. Cell. Biol. 26, 2803-2816.
-
(2006)
Mol. Cell. Biol.
, vol.26
, pp. 2803-2816
-
-
Dybkov, O.1
Will, C.L.2
Deckert, J.3
Behzadnia, N.4
Hartmuth, K.5
Lührmann, R.6
-
24
-
-
0030611640
-
U2AF65 recruits a novel human DEAD box protein required for the U2 snRNPbranchpoint interaction
-
Fleckner, J., Zhang, M., Valcárcel, J. and Green, M. R. (1997). U2AF65 recruits a novel human DEAD box protein required for the U2 snRNPbranchpoint interaction. Genes Dev. 11, 1864-1872.
-
(1997)
Genes Dev.
, vol.11
, pp. 1864-1872
-
-
Fleckner, J.1
Zhang, M.2
Valcárcel, J.3
Green, M.R.4
-
25
-
-
0037121924
-
The splicing regulator TIA-1 interacts with U1-C to promote U1 snRNP recruitment to 5′ splice sites
-
Förch, P., Puig, O., Marténez, C., Séraphin, B. and Valcárcel, J. (2002). The splicing regulator TIA-1 interacts with U1-C to promote U1 snRNP recruitment to 5′ splice sites. EMBO J. 21, 6882-6892.
-
(2002)
EMBO J.
, vol.21
, pp. 6882-6892
-
-
Förch, P.1
Puig, O.2
Marténez, C.3
Séraphin, B.4
Valcárcel, J.5
-
26
-
-
0033568197
-
Luc7p, a novel yeast U1 snRNP protein with a role in 5′ splice site recognition
-
Fortes, P., Bilbao-Cortés, D., Fornerod, M., Rigaut, G., Raymond, W., Séraphin, B. and Mattaj, I. W. (1999). Luc7p, a novel yeast U1 snRNP protein with a role in 5′ splice site recognition. Genes Dev. 13, 2425-2438.
-
(1999)
Genes Dev.
, vol.13
, pp. 2425-2438
-
-
Fortes, P.1
Bilbao-Cortés, D.2
Fornerod, M.3
Rigaut, G.4
Raymond, W.5
Séraphin, B.6
Mattaj, I.W.7
-
27
-
-
0035161659
-
The yeast U5 snrnp coisolated with the U1 snrnp has an unexpected protein composition and includes the splicing factor Aar2p
-
Gottschalk, A., Kastner, B., Lührmann, R. and Fabrizio, P. (2001). The yeast U5 snrnp coisolated with the U1 snrnp has an unexpected protein composition and includes the splicing factor Aar2p. RNA 7, 1554-1565.
-
(2001)
RNA
, vol.7
, pp. 1554-1565
-
-
Gottschalk, A.1
Kastner, B.2
Lührmann, R.3
Fabrizio, P.4
-
28
-
-
0031878108
-
A potential role for U2AF-SAP 155 interactions in recruiting U2 snRNP to the branch site
-
Gozani, O., Potashkin, J. and Reed, R. (1998). A potential role for U2AF-SAP 155 interactions in recruiting U2 snRNP to the branch site. Mol. Cell. Biol. 18, 4752-4760.
-
(1998)
Mol. Cell. Biol.
, vol.18
, pp. 4752-4760
-
-
Gozani, O.1
Potashkin, J.2
Reed, R.3
-
29
-
-
41549107955
-
Modularization of biochemical networks based on classification of Petri net t-invariants
-
Grafahrend-Belau, E., Schreiber, F., Heiner, M., Sackmann, A., Junker, B., Grunwald, S., Speer, A.,Winder, K. and Koch, I. (2008). Modularization of biochemical networks based on classification of Petri net t-invariants. BMC Bioinformatics 9, 90.
-
(2008)
BMC Bioinformatics
, vol.9
, pp. 90
-
-
Grafahrend-Belau, E.1
Schreiber, F.2
Heiner, M.3
Sackmann, A.4
Junker, B.5
Grunwald, S.6
Speer, A.7
Winder, K.8
Koch, I.9
-
30
-
-
0035252410
-
Alternative splicing: Increasing diversity in the proteomic world
-
Graveley, B. R. (2001). Alternative splicing: increasing diversity in the proteomic world. Trends Genet. 17, 100-107.
-
(2001)
Trends Genet.
, vol.17
, pp. 100-107
-
-
Graveley, B.R.1
-
31
-
-
21244493903
-
Cotranscriptional spliceosome assembly occurs in a stepwise fashion and requires the cap binding complex
-
Görnemann, J., Kotovic, K. M., Hujer, K. and Neugebauer, K. M. (2005). Cotranscriptional spliceosome assembly occurs in a stepwise fashion and requires the cap binding complex. Mol. Cell. 19, 53-63.
-
(2005)
Mol. Cell.
, vol.19
, pp. 53-63
-
-
Görnemann, J.1
Kotovic, K.M.2
Hujer, K.3
Neugebauer, K.M.4
-
32
-
-
41549085829
-
Petri net modelling of gene regulation of the Duchenne muscular dystrophy
-
Grunwald, S., Speer, A., Ackermann, J. and Koch, I. (2008). Petri net modelling of gene regulation of the Duchenne muscular dystrophy. Biosystems 92, 189-205.
-
(2008)
Biosystems
, vol.92
, pp. 189-205
-
-
Grunwald, S.1
Speer, A.2
Ackermann, J.3
Koch, I.4
-
33
-
-
0036029247
-
Cytokines and related receptor-mediated signaling pathways
-
Haddad, J. J. (2002). Cytokines and related receptor-mediated signaling pathways. Biochem. Biophys. Res. Commun. 297, 700-713.
-
(2002)
Biochem. Biophys. Res. Commun.
, vol.297
, pp. 700-713
-
-
Haddad, J.J.1
-
34
-
-
3042699469
-
Model validation of biological pathways using Petri nets-demonstrated for apoptosis
-
Heiner, M., Koch, I. and Will, J. (2004). Model validation of biological pathways using Petri nets-demonstrated for apoptosis. Biosystems 75, 15-28.
-
(2004)
Biosystems
, vol.75
, pp. 15-28
-
-
Heiner, M.1
Koch, I.2
Will, J.3
-
35
-
-
9644278038
-
Widespread occurrence of alternative splicing at NAGNAG acceptors contributes to proteome plasticity
-
Hiller, M., Huse, K., Szafranski, K., Jahn, N., Hampe, J., Schreiber, S., Backofen, R. and Platzer, M. (2004). Widespread occurrence of alternative splicing at NAGNAG acceptors contributes to proteome plasticity. Nat. Genet. 36, 1255-1257.
-
(2004)
Nat. Genet.
, vol.36
, pp. 1255-1257
-
-
Hiller, M.1
Huse, K.2
Szafranski, K.3
Jahn, N.4
Hampe, J.5
Schreiber, S.6
Backofen, R.7
Platzer, M.8
-
36
-
-
33846049167
-
TassDB: A database of alternative tandem splice sites
-
Hiller, M., Nikolajewa, S., Huse, K., Szafranski, K., Rosenstiel, P., Schuster, S., Backofen, R. and Platzer, M. (2007). TassDB: a database of alternative tandem splice sites. Nucleic Acids Res. 35, D188-D192.
-
(2007)
Nucleic Acids Res.
, vol.35
-
-
Hiller, M.1
Nikolajewa, S.2
Huse, K.3
Szafranski, K.4
Rosenstiel, P.5
Schuster, S.6
Backofen, R.7
Platzer, M.8
-
37
-
-
0000491652
-
Petri Net application of metabolic processes
-
Hofestädt, R. (1994). Petri Net application of metabolic processes. Systems Analysis Modelling Simulation 16, 113-122.
-
(1994)
Systems Analysis Modelling Simulation
, vol.16
, pp. 113-122
-
-
Hofestädt, R.1
-
38
-
-
0032229446
-
Quantitative modeling of biochemical networks
-
Hofestädt, R. and Thelen, S. (1998). Quantitative modeling of biochemical networks. In Silico Biol. 1, 0006.
-
(1998)
Silico Biol.
, vol.1
, pp. 0006
-
-
Hofestädt, R.1
Thelen, S.2
-
39
-
-
38349138834
-
Regulation of alternative splicing: More than just the ABCs
-
House, A. E. and Lynch, K. W. (2007). Regulation of alternative splicing: More than just the ABCs. J. Biol. Chem. 283, 1217-1221.
-
(2007)
J. Biol. Chem.
, vol.283
, pp. 1217-1221
-
-
House, A.E.1
Lynch, K.W.2
-
40
-
-
25144489068
-
Overview of cell death signaling pathways
-
Jin, Z. and El-Deiry, W. S. (2005). Overview of cell death signaling pathways. Cancer Biol. Ther. 4, 139-163.
-
(2005)
Cancer Biol. Ther.
, vol.4
, pp. 139-163
-
-
Jin, Z.1
El-Deiry, W.S.2
-
41
-
-
0347623371
-
Genome-wide survey of human alternative pre-mRNA splicing with exon junction microarrays
-
Johnson, J. M., Castle, J., Garrett-Engele, P., Kan, Z., Loerch, P. M., Armour, C. D., Santos, R., Schadt, E. E., Stoughton, R. and Shoemaker, D. D. (2003). Genome-wide survey of human alternative pre-mRNA splicing with exon junction microarrays. Science 302, 2141-2144.
-
(2003)
Science
, vol.302
, pp. 2141-2144
-
-
Johnson, J.M.1
Castle, J.2
Garrett-Engele, P.3
Kan, Z.4
Loerch, P.M.5
Armour, C.D.6
Santos, R.7
Schadt, E.E.8
Stoughton, R.9
Shoemaker, D.D.10
-
42
-
-
0042671357
-
Pre-mRNA splicing: Awash in a sea of proteins
-
Jurica, M. S. and Moore, M. J. (2003). Pre-mRNA splicing: awash in a sea of proteins. Mol. Cell. 12, 5-14.
-
(2003)
Mol. Cell.
, vol.12
, pp. 5-14
-
-
Jurica, M.S.1
Moore, M.J.2
-
43
-
-
38549126643
-
KEGG for linking genomes to life and the environment
-
Kanehisa, M., Araki, M., Goto, S., Hattori, M., Hirakawa, M., Itoh, M., Katayama, T., Kawashima, S., Okuda, S., Tokimatsu, T. and Yamanishi, Y. (2008). KEGG for linking genomes to life and the environment. Nucleic Acids Res. 36, D480-D484.
-
(2008)
Nucleic Acids Res.
, vol.36
-
-
Kanehisa, M.1
Araki, M.2
Goto, S.3
Hattori, M.4
Hirakawa, M.5
Itoh, M.6
Katayama, T.7
Kawashima, S.8
Okuda, S.9
Tokimatsu, T.10
Yamanishi, Y.11
-
44
-
-
33846047770
-
IntAct - Open source resource for molecular interaction data
-
Kerrien, S., Alam-Faruque, Y., Aranda, B., Bancarz, I., Bridge, A., Derow, C., Dimmer, E., Feuermann, M., Friedrichsen, A., Huntley, R., Kohler, C., Khadake, J., Leroy, C., Liban, A., Lieftink, C., Montecchi-Palazzi, L., Orchard, S., Risse, J., Robbe, K., Roechert, B., Thorneycroft, D., Zhang, Y., Apweiler, R. and Hermjakob, H. (2007). IntAct - open source resource for molecular interaction data. Nucleic Acids Res. 35, D561-D565.
-
(2007)
Nucleic Acids Res.
, vol.35
-
-
Kerrien, S.1
Alam-Faruque, Y.2
Aranda, B.3
Bancarz, I.4
Bridge, A.5
Derow, C.6
Dimmer, E.7
Feuermann, M.8
Friedrichsen, A.9
Huntley, R.10
Kohler, C.11
Khadake, J.12
Leroy, C.13
Liban, A.14
Lieftink, C.15
Montecchi-Palazzi, L.16
Orchard, S.17
Risse, J.18
Robbe, K.19
Roechert, B.20
Thorneycroft, D.21
Zhang, Y.22
Apweiler, R.23
Hermjakob, H.24
more..
-
45
-
-
57849130707
-
Modeling of the U1 snRNP assembly pathway in alternative splicing in human cells using Petri nets
-
Kielbassa, J., Bortfeldt, R., Schuster, S. and Koch, I. (2008). Modeling of the U1 snRNP assembly pathway in alternative splicing in human cells using Petri nets. Comput. Biol. Chem. 33, 46-61.
-
(2008)
Comput. Biol. Chem.
, vol.33
, pp. 46-61
-
-
Kielbassa, J.1
Bortfeldt, R.2
Schuster, S.3
Koch, I.4
-
46
-
-
67651223375
-
Petri nets in analysis of biological networks
-
Junker, B. H. and Schreiber, F. (eds.), Pan, Y. and Zomaya, A. Y. (series eds.), Wiley
-
Koch, I. and Heiner, M. (2008). Petri nets in analysis of biological networks. In: Wiley Book Series in Bioinformatics, Junker, B. H. and Schreiber, F. (eds.), Pan, Y. and Zomaya, A. Y. (series eds.), Wiley, pp. 139-180.
-
(2008)
Wiley Book Series in Bioinformatics
, pp. 139-180
-
-
Koch, I.1
Heiner, M.2
-
47
-
-
16344381707
-
Application of Petri net theory for modelling and validation of the sucrose breakdown pathway in the potato tuber
-
Koch, I., Junker, B. H. and Heiner, M. (2005). Application of Petri net theory for modelling and validation of the sucrose breakdown pathway in the potato tuber. Bioinformatics 21, 1219-1226.
-
(2005)
Bioinformatics
, vol.21
, pp. 1219-1226
-
-
Koch, I.1
Junker, B.H.2
Heiner, M.3
-
48
-
-
25844443478
-
Insights into the mechanisms of splicing: More lessons from the ribosome
-
Konarska, M. M. and Query, C. C. (2005). Insights into the mechanisms of splicing: more lessons from the ribosome. Genes Dev. 19, 2255-2260.
-
(2005)
Genes Dev.
, vol.19
, pp. 2255-2260
-
-
Konarska, M.M.1
Query, C.C.2
-
49
-
-
33644877426
-
Transpath: An information resource for storing and visualizing signaling pathways and their pathological aberrations
-
Krull, M., Pistor, S., Voss, N., Kel, A., Reuter, I., Kronenberg, D., Michael, H., Schwarzer, K., Potapov, A., Choi, C., Kel-Margoulis, O. and Wingender, E. (2006). Transpath: an information resource for storing and visualizing signaling pathways and their pathological aberrations. Nucleic Acids Res. 34, D546-D551.
-
(2006)
Nucleic Acids Res.
, vol.34
-
-
Krull, M.1
Pistor, S.2
Voss, N.3
Kel, A.4
Reuter, I.5
Kronenberg, D.6
Michael, H.7
Schwarzer, K.8
Potapov, A.9
Choi, C.10
Kel-Margoulis, O.11
Wingender, E.12
-
50
-
-
33748127132
-
U1-like snRNAs lacking complementarity to canonical 5' splice sites
-
Kyriakopoulou, C., Larsson, P., Liu, L., Schuster, J., Söderbom, F., Kirsebom, L. A. and Virtanen, A. (2006). U1-like snRNAs lacking complementarity to canonical 5' splice sites. RNA 12, 1603-1611.
-
(2006)
RNA
, vol.12
, pp. 1603-1611
-
-
Kyriakopoulou, C.1
Larsson, P.2
Liu, L.3
Schuster, J.4
Söderbom, F.5
Kirsebom, L.A.6
Virtanen, A.7
-
51
-
-
0032515969
-
The human U5-200kD DEXH-box protein unwinds U4/U6 RNA duplices in vitro
-
Laggerbauer, B., Achsel, T. and Lührmann, R. (1998). The human U5-200kD DEXH-box protein unwinds U4/U6 RNA duplices in vitro. Proc. Natl. Acad. Sci. USA 95, 4188-4192.
-
(1998)
Proc. Natl. Acad. Sci. USA
, vol.95
, pp. 4188-4192
-
-
Laggerbauer, B.1
Achsel, T.2
Lührmann, R.3
-
52
-
-
33745613530
-
The network of protein-protein interactions within the human U4/U6.U5 tri-snRNP
-
Liu, S., Rauhut, R., Vornlocher, H.-P. and Lührmann, R. (2006). The network of protein-protein interactions within the human U4/U6.U5 tri-snRNP. RNA 12, 1418-1430.
-
(2006)
RNA
, vol.12
, pp. 1418-1430
-
-
Liu, S.1
Rauhut, R.2
Vornlocher, H.-P.3
Lührmann, R.4
-
53
-
-
0032908071
-
Elevated levels of a U4/U6.U5 snRNP-associated protein, Spp381p, rescue a mutant defective in spliceosome maturation
-
Lybarger, S., Beickman, K., Brown, V., Dembla-Rajpal, N., Morey, K., Seipelt, R. and Rymond, B. C. (1999). Elevated levels of a U4/U6.U5 snRNP-associated protein, Spp381p, rescue a mutant defective in spliceosome maturation. Mol. Cell. Biol. 19, 577-584.
-
(1999)
Mol. Cell. Biol.
, vol.19
, pp. 577-584
-
-
Lybarger, S.1
Beickman, K.2
Brown, V.3
Dembla-Rajpal, N.4
Morey, K.5
Seipelt, R.6
Rymond, B.C.7
-
54
-
-
0031013878
-
SC35-mediated reconstitution of splicing in U2AF-depleted nuclear extract
-
MacMillan, A. M., McCaw, P. S., Crispino, J. D. and Sharp, P. A. (1997). SC35-mediated reconstitution of splicing in U2AF-depleted nuclear extract. Proc. Natl. Acad. Sci. USA 94, 133-136.
-
(1997)
Proc. Natl. Acad. Sci. USA
, vol.94
, pp. 133-136
-
-
MacMillan, A.M.1
McCaw, P.S.2
Crispino, J.D.3
Sharp, P.A.4
-
55
-
-
0037073946
-
Small nuclear ribonucleoprotein remodeling during catalytic activation of the spliceosome
-
Makarov, E. M., Makarova, O. V., Urlaub, H., Gentzel, M.,Will, C. L.,Wilm, M. and Lührmann, R. (2002). Small nuclear ribonucleoprotein remodeling during catalytic activation of the spliceosome. Science 298, 2205-2208.
-
(2002)
Science
, vol.298
, pp. 2205-2208
-
-
Makarov, E.M.1
Makarova, O.V.2
Urlaub, H.3
Gentzel, M.4
Will, C.L.5
Wilm, M.6
Lührmann, R.7
-
56
-
-
3242737496
-
A subset of human 35S U5 proteins, including Prp19, function prior to catalytic step 1 of splicing
-
Makarova, O. V., Makarov, E. M., Urlaub, H., Will, C. L., Gentzel, M., Wilm, M. and Lührmann, R. (2004). A subset of human 35S U5 proteins, including Prp19, function prior to catalytic step 1 of splicing. EMBO J. 23, 2381-2391.
-
(2004)
EMBO J.
, vol.23
, pp. 2381-2391
-
-
Makarova, O.V.1
Makarov, E.M.2
Urlaub, H.3
Will, C.L.4
Gentzel, M.5
Wilm, M.6
Lührmann, R.7
-
57
-
-
0037627610
-
The U1 snRNP base pairs with the 5' splice site within a penta-snRNP complex
-
Malca, H., Shomron, N. and Ast, G. (2003). The U1 snRNP base pairs with the 5' splice site within a penta-snRNP complex. Mol. Cell. Biol. 23, 3442-3455.
-
(2003)
Mol. Cell. Biol.
, vol.23
, pp. 3442-3455
-
-
Malca, H.1
Shomron, N.2
Ast, G.3
-
58
-
-
0033648431
-
Hybrid Petri net representation of gene regulatory network
-
Matsuno, H., Doi, A., Nagasaki, M. and Miyano, S. (2000). Hybrid Petri net representation of gene regulatory network. Pac. Symp. Biocomput. 5, 338-349.
-
(2000)
Pac. Symp. Biocomput.
, vol.5
, pp. 338-349
-
-
Matsuno, H.1
Doi, A.2
Nagasaki, M.3
Miyano, S.4
-
59
-
-
33645299531
-
A new regulatory interaction suggested by simulations for circadian genetic control mechanism in mammals
-
Matsuno, H., Inouye, S.-I. T., Okitsu, Y., Fujii, Y. and Miyano, S. (2006). A new regulatory interaction suggested by simulations for circadian genetic control mechanism in mammals. J. Bioinform. Comput. Biol. 4, 139-153.
-
(2006)
J. Bioinform. Comput. Biol.
, vol.4
, pp. 139-153
-
-
Matsuno, H.1
Inouye, S.-I.T.2
Okitsu, Y.3
Fujii, Y.4
Miyano, S.5
-
60
-
-
33744937919
-
Exon ligation is proofread by the DExD/H-box ATPase Prp22p
-
Mayas, R. M., Maita, H. and Staley, J. P. (2006). Exon ligation is proofread by the DExD/H-box ATPase Prp22p. Nat. Struct. Mol. Biol. 13, 482-490.
-
(2006)
Nat. Struct. Mol. Biol.
, vol.13
, pp. 482-490
-
-
Mayas, R.M.1
Maita, H.2
Staley, J.P.3
-
61
-
-
0035393343
-
Genome-wide detection of alternative splicing in expressed sequences of human genes
-
Modrek, B., Resch, A., Grasso, C. and Lee, C. (2001). Genome-wide detection of alternative splicing in expressed sequences of human genes. Nucleic Acids Res. 29, 2850-2859.
-
(2001)
Nucleic Acids Res.
, vol.29
, pp. 2850-2859
-
-
Modrek, B.1
Resch, A.2
Grasso, C.3
Lee, C.4
-
62
-
-
0037107418
-
Hierarchical, clustered protein interactions with U4/U6 snRNA: A biochemical role for U4/U6 proteins
-
Nottrott, S., Urlaub, H. and Lührmann, R. (2002). Hierarchical, clustered protein interactions with U4/U6 snRNA: a biochemical role for U4/U6 proteins. EMBO J. 21, 5527-5538.
-
(2002)
EMBO J.
, vol.21
, pp. 5527-5538
-
-
Nottrott, S.1
Urlaub, H.2
Lührmann, R.3
-
63
-
-
33748766359
-
Inhibition of a spliceosome turnover pathway suppresses splicing defects
-
Pandit, S., Lynn, B. and Rymond, B. C. (2006). Inhibition of a spliceosome turnover pathway suppresses splicing defects. Proc. Natl. Acad. Sci. USA 103, 13700-13705.
-
(2006)
Proc. Natl. Acad. Sci. USA
, vol.103
, pp. 13700-13705
-
-
Pandit, S.1
Lynn, B.2
Rymond, B.C.3
-
64
-
-
3342925846
-
Comparison of network-based pathway analysis methods
-
Papin, J. A., Stelling, J., Price, N. D., Klamt, S., Schuster, S. and Palsson, B. O. (2004). Comparison of network-based pathway analysis methods. Trends Biotechnol. 22, 400-405.
-
(2004)
Trends Biotechnol.
, vol.22
, pp. 400-405
-
-
Papin, J.A.1
Stelling, J.2
Price, N.D.3
Klamt, S.4
Schuster, S.5
Palsson, B.O.6
-
65
-
-
8644278829
-
Identification of alternative splicing regulators by RNA interference in Drosophila
-
Park, J. W., Parisky, K., Celotto, A. M., Reenan, R. A. and Graveley, B. R. (2004). Identification of alternative splicing regulators by RNA interference in Drosophila. Proc. Natl. Acad. Sci. USA 101, 15974-15979.
-
(2004)
Proc. Natl. Acad. Sci. USA
, vol.101
, pp. 15974-15979
-
-
Park, J.W.1
Parisky, K.2
Celotto, A.M.3
Reenan, R.A.4
Graveley, B.R.5
-
66
-
-
0034193568
-
Protein-protein interactions define specificity in signal transduction
-
Pawson, T. and Nash, P. (2000). Protein-protein interactions define specificity in signal transduction. Genes Dev. 14, 1027-1047.
-
(2000)
Genes Dev.
, vol.14
, pp. 1027-1047
-
-
Pawson, T.1
Nash, P.2
-
67
-
-
0345564842
-
ATP requirement for Prp5p function is determined by Cus2p and the structure of U2 small nuclear RNA
-
Perriman, R., Barta, I., Voeltz, G. K., Abelson, J. and Ares, M. jr. (2003). ATP requirement for Prp5p function is determined by Cus2p and the structure of U2 small nuclear RNA. Proc. Natl. Acad. Sci. USA 100, 13857-13862.
-
(2003)
Proc. Natl. Acad. Sci. USA
, vol.100
, pp. 13857-13862
-
-
Perriman, R.1
Barta, I.2
Voeltz, G.K.3
Abelson, J.4
Ares Jr., M.5
-
68
-
-
0344052685
-
METATOOL: For studying metabolic networks
-
Pfeiffer, T., Sánchez-Valdenebro, I., Nuño, J. C., Montero, F. and Schuster, S. (1999). METATOOL: for studying metabolic networks. Bioinformatics 15, 251-257.
-
(1999)
Bioinformatics
, vol.15
, pp. 251-257
-
-
Pfeiffer, T.1
Sánchez-Valdenebro, I.2
Nuño, J.C.3
Montero, F.4
Schuster, S.5
-
69
-
-
33747853260
-
APID: Agile Protein Interaction DataAnalyzer
-
Prieto, C. and De Las Rivas, J. (2006). APID: Agile Protein Interaction DataAnalyzer. Nucleic Acids Res. 34, W298-W302.
-
(2006)
Nucleic Acids Res.
, vol.34
-
-
Prieto, C.1
De Las Rivas, J.2
-
70
-
-
0033105003
-
Interaction of the U1 snRNP with nonconserved intronic sequences affects 5′ splice site selection
-
Puig, O., Gottschalk, A., Fabrizio, P. and Séraphin, B. (1999). Interaction of the U1 snRNP with nonconserved intronic sequences affects 5′ splice site selection. Genes Dev. 13, 569-580.
-
(1999)
Genes Dev.
, vol.13
, pp. 569-580
-
-
Puig, O.1
Gottschalk, A.2
Fabrizio, P.3
Séraphin, B.4
-
71
-
-
28444445926
-
-
The R Development Core Team. R Foundation for Statistical Computing, Vienna, Austria. ISBN 3-900051-07-0
-
The R Development Core Team (2005). R: A language and environment for statistical computing. R Foundation for Statistical Computing, Vienna, Austria. ISBN 3-900051-07-0.
-
(2005)
R: A Language and Environment for Statistical Computing
-
-
-
72
-
-
0027902978
-
Petri net representations in metabolic pathways
-
Reddy, V. N., Mavrovouniotis, M. L. and Liebman, M. N. (1993). Petri net representations in metabolic pathways. Proc. Int. Conf. Intell. Syst. Mol. Biol. 1, 328-336.
-
(1993)
Proc. Int. Conf. Intell. Syst. Mol. Biol.
, vol.1
, pp. 328-336
-
-
Reddy, V.N.1
Mavrovouniotis, M.L.2
Liebman, M.N.3
-
73
-
-
0030026495
-
Qualitative analysis of biochemical reaction systems
-
Reddy, V. N., Liebman, M. N. and Mavrovouniotis, M. L. (1996). Qualitative analysis of biochemical reaction systems. Comput. Biol. Med. 26, 9-24.
-
(1996)
Comput. Biol. Med.
, vol.26
, pp. 9-24
-
-
Reddy, V.N.1
Liebman, M.N.2
Mavrovouniotis, M.L.3
-
74
-
-
77951956151
-
Snoopy - A unifying petri net framework to investigate biomolecular networks
-
published ahead of print
-
Rohr, C., Marwan, W. and Heiner, M. (2010). Snoopy - a unifying petri net framework to investigate biomolecular networks. Bioinformatics 26, published ahead of print.
-
(2010)
Bioinformatics
, vol.26
-
-
Rohr, C.1
Marwan, W.2
Heiner, M.3
-
75
-
-
33845417184
-
Application of Petri net based analysis techniques to signal transduction pathways
-
Sackmann, A., Heiner, M. and Koch, I. (2006). Application of Petri net based analysis techniques to signal transduction pathways. BMC Bioinformatics 7, 482.
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 482
-
-
Sackmann, A.1
Heiner, M.2
Koch, I.3
-
76
-
-
33846851564
-
An analysis of the Petri net based model of the human body iron homeostasis process
-
Sackmann, A., Formanowicz, D., Formanowicz, P., Koch, I. and Blazewicz, J. (2007). An analysis of the Petri net based model of the human body iron homeostasis process. Comput. Biol. Chem. 31, 1-10.
-
(2007)
Comput. Biol. Chem.
, vol.31
, pp. 1-10
-
-
Sackmann, A.1
Formanowicz, D.2
Formanowicz, P.3
Koch, I.4
Blazewicz, J.5
-
77
-
-
4143124637
-
RNAi knockdown of hPrp31 leads to an accumulation of 36 U4/U6 di-snRNPs in Cajal bodies
-
Schaffert, N., Hossbach, M., Heintzmann, R., Achsel, T. and Lührmann, R. (2004). RNAi knockdown of hPrp31 leads to an accumulation of 36 U4/U6 di-snRNPs in Cajal bodies. EMBO J. 23, 3000-3009.
-
(2004)
EMBO J.
, vol.23
, pp. 3000-3009
-
-
Schaffert, N.1
Hossbach, M.2
Heintzmann, R.3
Achsel, T.4
Lührmann, R.5
-
78
-
-
0033136116
-
Toward metabolic phenomics: Analysis of genomic data using flux balances
-
Schilling, C. H., Edwards, J. S. and Palsson, B. O. (1999). Toward metabolic phenomics: analysis of genomic data using flux balances. Biotechnol. Prog. 15, 288-295.
-
(1999)
Biotechnol. Prog.
, vol.15
, pp. 288-295
-
-
Schilling, C.H.1
Edwards, J.S.2
Palsson, B.O.3
-
79
-
-
0000029295
-
On elementary flux modes in biochemical reaction systems at steady state
-
Schuster, S. and Hilgetag, C. (1994). On elementary flux modes in biochemical reaction systems at steady state. J. Biol. Syst. 2, 165-182.
-
(1994)
J. Biol. Syst.
, vol.2
, pp. 165-182
-
-
Schuster, S.1
Hilgetag, C.2
-
80
-
-
0033080396
-
Detection of elementary flux modes in biochemical networks: A promising tool for pathway analysis and metabolic engineering
-
Schuster, S., Dandekar, T. and Fell, D. A. (1999). Detection of elementary flux modes in biochemical networks: a promising tool for pathway analysis and metabolic engineering. Trends Biotechnol. 17, 53-60.
-
(1999)
Trends Biotechnol.
, vol.17
, pp. 53-60
-
-
Schuster, S.1
Dandekar, T.2
Fell, D.A.3
-
81
-
-
36949025593
-
The Predictive Power of Molecular Network Modelling
-
Eisenhaber, F. (ed.), Springer
-
Schuster, S., Klipp, E. and Marhl, M. (2006). The Predictive Power of Molecular Network Modelling. In: Discovering biomolecular mechanisms with computational biology, Eisenhaber, F. (ed.), Springer, pp. 95-103.
-
(2006)
Discovering Biomolecular Mechanisms with Computational Biology
, pp. 95-103
-
-
Schuster, S.1
Klipp, E.2
Marhl, M.3
-
82
-
-
37649001073
-
Understanding the roadmap of metabolism by pathway analysis
-
Schuster, S., von Kamp, A. and Pachkov, M. (2007). Understanding the roadmap of metabolism by pathway analysis. Methods Mol. Biol. 358, 199-226.
-
(2007)
Methods Mol. Biol.
, vol.358
, pp. 199-226
-
-
Schuster, S.1
Von Kamp, A.2
Pachkov, M.3
-
83
-
-
0026019713
-
PRP16 is an RNA-dependent ATPase that interacts transiently with the spliceosome
-
Schwer, B. and Guthrie, C. (1991). PRP16 is an RNA-dependent ATPase that interacts transiently with the spliceosome. Nature 349, 494-499.
-
(1991)
Nature
, vol.349
, pp. 494-499
-
-
Schwer, B.1
Guthrie, C.2
-
84
-
-
8644268780
-
A pathway of sequential arginine-serine-rich domain-splicing signal interactions during mammalian spliceosome assembly
-
Shen, H. and Green, M. R. (2004). A pathway of sequential arginine-serine-rich domain-splicing signal interactions during mammalian spliceosome assembly. Mol. Cell. 16, 363-373.
-
(2004)
Mol. Cell.
, vol.16
, pp. 363-373
-
-
Shen, H.1
Green, M.R.2
-
85
-
-
34547931108
-
Biochemical characterization of the ATPase and helicase activity of UAP56, an essential pre-mRNA splicing and mRNA export factor
-
Shen, J., Zhang, L. and Zhao, R. (2007). Biochemical characterization of the ATPase and helicase activity of UAP56, an essential pre-mRNA splicing and mRNA export factor. J. Biol. Chem. 282, 22544-22550.
-
(2007)
J. Biol. Chem.
, vol.282
, pp. 22544-22550
-
-
Shen, J.1
Zhang, L.2
Zhao, R.3
-
86
-
-
27544501653
-
Qualitative modelling of regulated metabolic pathways: Application to the tryptophan biosynthesis in E. coli
-
Simão, E., Remy, E., Thieffry, D. and Chaouiya, C. (2005). Qualitative modelling of regulated metabolic pathways: application to the tryptophan biosynthesis in E. coli. Bioinformatics 21 Suppl. 2, ii190-ii196.
-
(2005)
Bioinformatics
, vol.21
, Issue.SUPPL. 2
-
-
Simão, E.1
Remy, E.2
Thieffry, D.3
Chaouiya, C.4
-
87
-
-
33746441457
-
The EF-G-like GTPase Snu114p regulates spliceosome dynamics mediated by Brr2p, a DExD/H box ATPase
-
Small, E. C., Leggett, S. R.,Winans, A. A. and Staley, J. P. (2006). The EF-G-like GTPase Snu114p regulates spliceosome dynamics mediated by Brr2p, a DExD/H box ATPase. Mol. Cell. 23, 389-399.
-
(2006)
Mol. Cell.
, vol.23
, pp. 389-399
-
-
Small, E.C.1
Leggett, S.R.2
Winans, A.A.3
Staley, J.P.4
-
88
-
-
33344463111
-
Biochemical and NMR analyses of an SF3b155-p14-U2AF-RNA interaction network involved in branch point definition during pre-mRNA splicing
-
Spadaccini, R., Reidt, U., Dybkov, O., Will, C., Frank, R., Stier, G., Corsini, L., Wahl, M. C., L ührmann, R. and Sattler, M. (2006). Biochemical and NMR analyses of an SF3b155-p14-U2AF-RNA interaction network involved in branch point definition during pre-mRNA splicing. RNA 12, 410-425.
-
(2006)
RNA
, vol.12
, pp. 410-425
-
-
Spadaccini, R.1
Reidt, U.2
Dybkov, O.3
Will, C.4
Frank, R.5
Stier, G.6
Corsini, L.7
Wahl, M.C.8
Lührmann, R.9
Sattler, M.10
-
89
-
-
0032489021
-
Mechanical devices of the spliceosome: Motors, clocks, springs, and things
-
Staley, J. P. and Guthrie, C. (1998). Mechanical devices of the spliceosome: motors, clocks, springs, and things. Cell 92, 315-326.
-
(1998)
Cell
, vol.92
, pp. 315-326
-
-
Staley, J.P.1
Guthrie, C.2
-
90
-
-
0036798006
-
Signals and their transduction pathways regulating alternative splicing: A new dimension of the human genome
-
Stamm, S. (2002). Signals and their transduction pathways regulating alternative splicing: a new dimension of the human genome. Hum. Mol. Genet. 11, 2409-2416.
-
(2002)
Hum. Mol. Genet.
, vol.11
, pp. 2409-2416
-
-
Stamm, S.1
-
91
-
-
0003953265
-
-
Berlin. HU Berlin, Dept. of CS
-
Starke, P. (1998). INA - Integrated Net Analyzer Manual, Berlin. HU Berlin, Dept. of CS, www2.informatik.huberlin. de/lehrstuehle/automaten/ina/.
-
(1998)
INA - Integrated Net Analyzer Manual
-
-
Starke, P.1
-
92
-
-
0035161567
-
Biochemical and genetic analyses of the U5, U6, and U4/U6 x U5 small nuclear ribonucleoproteins from Saccharomyces cerevisiae
-
Stevens, S. W., Barta, I., Ge, H. Y., Moore, R. E., Young, M. K., Lee, T. D. and Abelson, J. (2001). Biochemical and genetic analyses of the U5, U6, and U4/U6 x U5 small nuclear ribonucleoproteins from Saccharomyces cerevisiae. RNA 7, 1543-1553.
-
(2001)
RNA
, vol.7
, pp. 1543-1553
-
-
Stevens, S.W.1
Barta, I.2
Ge, H.Y.3
Moore, R.E.4
Young, M.K.5
Lee, T.D.6
Abelson, J.7
-
93
-
-
0036158942
-
Composition and functional characterization of the yeast spliceosomal penta-snRNP
-
Stevens, S. W., Ryan, D. E., Ge, H. Y., Moore, R. E., Young, M. K., Lee, T. D. and Abelson, J. (2002). Composition and functional characterization of the yeast spliceosomal penta-snRNP. Mol. Cell. 9, 31-44.
-
(2002)
Mol. Cell.
, vol.9
, pp. 31-44
-
-
Stevens, S.W.1
Ryan, D.E.2
Ge, H.Y.3
Moore, R.E.4
Young, M.K.5
Lee, T.D.6
Abelson, J.7
-
94
-
-
33244484374
-
Ontology based standardization of Petri net modeling for signaling pathways
-
Takai-Igarashi, T. (2005). Ontology based standardization of Petri net modeling for signaling pathways. In Silico Biol. 5, 0047.
-
(2005)
Silico Biol.
, vol.5
, pp. 0047
-
-
Takai-Igarashi, T.1
-
95
-
-
0028072388
-
SR proteins can compensate for the loss of U1 snRNP functions in vitro
-
Tarn, W.-Y. and Steitz, J. A. (1994). SR proteins can compensate for the loss of U1 snRNP functions in vitro. Genes Dev. 8, 2704-2717.
-
(1994)
Genes Dev.
, vol.8
, pp. 2704-2717
-
-
Tarn, W.-Y.1
Steitz, J.A.2
-
96
-
-
0345865005
-
ASD: The Alternative Splicing Database
-
Thanaraj, T. A., Stamm, S., Clark, F., Riethoven, J.-J., Le Texier, V. and Muilu, J. (2004). ASD: the Alternative Splicing Database. Nucleic Acids Res. 32, D64-D69.
-
(2004)
Nucleic Acids Res.
, vol.32
-
-
Thanaraj, T.A.1
Stamm, S.2
Clark, F.3
Riethoven, J.-J.4
Le Texier, V.5
Muilu, J.6
-
97
-
-
84891561223
-
TInA (T-invariant analysis) - A tool box for exploring pathways in biochemical systems at steady state
-
Grosse I., Neumann, S., Posch, S., Schreiber, F. and Stadler, P. (eds.), Halle
-
Thormann, A., Rudolph, K. and Koch, I. (2009). TInA (T-invariant analysis) - a tool box for exploring pathways in biochemical systems at steady state. In: German Conference on Bioinformatics 2009, Short Papers and Abstracts, Grosse, I., Neumann, S., Posch, S., Schreiber, F. and Stadler, P. (eds.), Halle, pp. 157-158.
-
(2009)
German Conference on Bioinformatics 2009, Short Papers and Abstracts
, pp. 157-158
-
-
Thormann, A.1
Rudolph, K.2
Koch, I.3
-
98
-
-
10644286537
-
Roles of the U5 snRNP in spliceosome dynamics and catalysis
-
Turner, I. A., Norman, C. M., Churcher, M. J. and Newman, A. J. (2004). Roles of the U5 snRNP in spliceosome dynamics and catalysis. Biochem. Soc. Trans. 32, 928-931.
-
(2004)
Biochem. Soc. Trans.
, vol.32
, pp. 928-931
-
-
Turner, I.A.1
Norman, C.M.2
Churcher, M.J.3
Newman, A.J.4
-
99
-
-
36248936068
-
Protein-free spliceosomal snRNAs catalyze a reaction that resembles the first step of splicing
-
Valadkhan, S., Mohammadi, A., Wachtel, C. and Manley, J. L. (2007). Protein-free spliceosomal snRNAs catalyze a reaction that resembles the first step of splicing. RNA 13, 2300-2311.
-
(2007)
RNA
, vol.13
, pp. 2300-2311
-
-
Valadkhan, S.1
Mohammadi, A.2
Wachtel, C.3
Manley, J.L.4
-
100
-
-
0035053295
-
Functional contacts with a range of splicing proteins suggest a central role for Brr2p in the dynamic control of the order of events in spliceosomes of Saccharomyces cerevisiae
-
van Nues, R. W. and Beggs, J. D. (2001). Functional contacts with a range of splicing proteins suggest a central role for Brr2p in the dynamic control of the order of events in spliceosomes of Saccharomyces cerevisiae. Genetics 157, 1451-1467.
-
(2001)
Genetics
, vol.157
, pp. 1451-1467
-
-
Van Nues, R.W.1
Beggs, J.D.2
-
101
-
-
7444220147
-
Aberrant and alternative splicing in cancer
-
Venables, J. P. (2004). Aberrant and alternative splicing in cancer. Cancer Res. 64, 7647-7654.
-
(2004)
Cancer Res.
, vol.64
, pp. 7647-7654
-
-
Venables, J.P.1
-
102
-
-
23944469448
-
The Isy1p component of the NineTeen complex interacts with the ATPase Prp16p to regulate the fidelity of pre-mRNA splicing
-
Villa, T. and Guthrie, C. (2005). The Isy1p component of the NineTeen complex interacts with the ATPase Prp16p to regulate the fidelity of pre-mRNA splicing. Genes Dev. 19, 1894-1904.
-
(2005)
Genes Dev.
, vol.19
, pp. 1894-1904
-
-
Villa, T.1
Guthrie, C.2
-
103
-
-
33846086800
-
STING 7 - Recent developments in the integration and prediction of protein interactions
-
von Mering, C., Jensen, L. J., Kuhn, M., Chaffron, S., Doerks, T., Krüger, B., Snel, B. and Bork, P. (2007). STING 7 - recent developments in the integration and prediction of protein interactions. Nucleic Acids Res. 35, D358-D362.
-
(2007)
Nucleic Acids Res.
, vol.35
-
-
Von Mering, C.1
Jensen, L.J.2
Kuhn, M.3
Chaffron, S.4
Doerks, T.5
Krüger, B.6
Snel, B.7
Bork, P.8
-
104
-
-
0035370526
-
Spliceosomal UsnRNP biogenesis, structure and function
-
Will, C. L. and Lührmann, R. (2001). Spliceosomal UsnRNP biogenesis, structure and function. Curr. Opin. Cell Biol. 13, 290-301.
-
(2001)
Curr. Opin. Cell Biol.
, vol.13
, pp. 290-301
-
-
Will, C.L.1
Lührmann, R.2
-
105
-
-
26844431946
-
Splicing of a rare class of introns by the U12-dependent spliceosome
-
Will, C. L. and Lührmann, R. (2005). Splicing of a rare class of introns by the U12-dependent spliceosome. Biol. Chem. 386, 713-724.
-
(2005)
Biol. Chem.
, vol.386
, pp. 713-724
-
-
Will, C.L.1
Lührmann, R.2
-
106
-
-
0037119975
-
Characterization of novel SF3b and 17S U2 snRNP proteins, including a human Prp5p homologue and an SF3b DEAD-box protein
-
Will, C. L., Urlaub, H., Achsel, T., Gentzel, M., Wilm, M. and Lührmann, R. (2002). Characterization of novel SF3b and 17S U2 snRNP proteins, including a human Prp5p homologue and an SF3b DEAD-box protein. EMBO J. 21, 4978-4988.
-
(2002)
EMBO J.
, vol.21
, pp. 4978-4988
-
-
Will, C.L.1
Urlaub, H.2
Achsel, T.3
Gentzel, M.4
Wilm, M.5
Lührmann, R.6
-
107
-
-
0032525135
-
Progression through the spliceosome cycle requires Prp38p function for U4/U6 snRNA dissociation
-
Xie, J., Beickman, K., Otte, E. and Rymond, B. C. (1998). Progression through the spliceosome cycle requires Prp38p function for U4/U6 snRNA dissociation. EMBO J. 17, 2938-2946.
-
(1998)
EMBO J.
, vol.17
, pp. 2938-2946
-
-
Xie, J.1
Beickman, K.2
Otte, E.3
Rymond, B.C.4
-
108
-
-
4544276777
-
Network-based regulatory pathways analysis
-
Xiong, M., Zhao, J. and Xiong, H. (2004). Network-based regulatory pathways analysis. Bioinformatics 20, 2056-2066.
-
(2004)
Bioinformatics
, vol.20
, pp. 2056-2066
-
-
Xiong, M.1
Zhao, J.2
Xiong, H.3
-
109
-
-
1542380571
-
Prp5 bridges U1 and U2 snRNPs and enables stable U2 snRNP association with intron RNA
-
Xu, Y.-Z., Newnham, C. M., Kameoka, S., Huang, T., Konarska, M. M. and Query, C. C. (2004). Prp5 bridges U1 and U2 snRNPs and enables stable U2 snRNP association with intron RNA. EMBO J. 23, 376-385.
-
(2004)
EMBO J.
, vol.23
, pp. 376-385
-
-
Xu, Y.-Z.1
Newnham, C.M.2
Kameoka, S.3
Huang, T.4
Konarska, M.M.5
Query, C.C.6
-
110
-
-
0345602990
-
Topological analysis of metabolic networks based on Petri net theory
-
Zevedei-Oancea, I. and Schuster, S. (2003). Topological analysis of metabolic networks based on Petri net theory. In Silico Biol. 3, 0029.
-
(2003)
Silico Biol.
, vol.3
, pp. 0029
-
-
Zevedei-Oancea, I.1
Schuster, S.2
-
111
-
-
34548407017
-
Discovering functions and revealing mechanisms at molecular level from biological networks
-
Zhang, S., Jin, G., Zhang, X.-S. and Chen, L. (2007). Discovering functions and revealing mechanisms at molecular level from biological networks. Proteomics 7, 2856-2869.
-
(2007)
Proteomics
, vol.7
, pp. 2856-2869
-
-
Zhang, S.1
Jin, G.2
Zhang, X.-S.3
Chen, L.4
-
112
-
-
0037068447
-
Comprehensive proteomic analysis of the human spliceosome
-
Zhou, Z., Licklider, L. J., Gygi, S. P. and Reed, R. (2002). Comprehensive proteomic analysis of the human spliceosome. Nature 419, 182-185.
-
(2002)
Nature
, vol.419
, pp. 182-185
-
-
Zhou, Z.1
Licklider, L.J.2
Gygi, S.P.3
Reed, R.4
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