-
1
-
-
0034625143
-
The Escherichia coli MG1655 in silico metabolic genotype: Its definition, characteristics, and capabilities
-
25862 10805808
-
Edwards JS Palsson BO The Escherichia coli MG1655 in silico metabolic genotype: Its definition, characteristics, and capabilities Proc Natl Acad Sci USA 2000 97 10 5528-5533 25862 10805808
-
(2000)
Proc Natl Acad Sci USA
, vol.97
, pp. 5528-5533
-
-
Edwards, J.S.1
Palsson, B.O.2
-
4
-
-
0034615791
-
Theory for the systemic definition of metabolic pathways and their use in interpreting metabolic function from a pathway-oriented view
-
10716907
-
Schilling CH Letscher D Palsson BO Theory for the systemic definition of metabolic pathways and their use in interpreting metabolic function from a pathway-oriented view Journal of Theoretical Biology 2000 203 229-248 10716907
-
(2000)
Journal of Theoretical Biology
, vol.203
, pp. 229-248
-
-
Schilling, C.H.1
Letscher, D.2
Palsson, B.O.3
-
5
-
-
41549111284
-
Exact conditions of liveliness for a class of Petri nets (in German)
-
Sankt Augustin: Ges f Mathematik u Datenverarbeitung
-
Lautenbach K Exact conditions of liveliness for a class of Petri nets (in German) Berichte der GMD 82, Sankt Augustin: Ges f Mathematik u Datenverarbeitung 1973
-
(1973)
Berichte Der GMD
, vol.82
-
-
Lautenbach, K.1
-
6
-
-
27144455400
-
Adenine and adenosine salvage pathways in erythrocytes and the role of S-adenosylhomocysteine hydrolase - A theoretical study using elementary flux modes
-
Schuster S Keanov D Adenine and adenosine salvage pathways in erythrocytes and the role of S-adenosylhomocysteine hydrolase - A theoretical study using elementary flux modes FEBS Journal 2005 272 20 5287- 5290
-
(2005)
FEBS Journal
, vol.272
, pp. 5287-5290
-
-
Schuster, S.1
Keanov, D.2
-
8
-
-
3042699469
-
Model validation of biological pathways using Petri nets-demonstrated for apoptosis
-
Heiner M Koch I Will J Model validation of biological pathways using Petri nets-demonstrated for apoptosis BioSystems 2004 75 1-3
-
(2004)
BioSystems
, vol.75
, pp. 1-3
-
-
Heiner, M.1
Koch, I.2
Will, J.3
-
10
-
-
33845417184
-
Application of Petri net based analysis techniques to signal transduction pathways
-
1686943 17081284
-
Sackmann A Heiner M Koch I Application of Petri net based analysis techniques to signal transduction pathways BMC Bioinformatics 2006 7: 482 1686943 17081284
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 482
-
-
Sackmann, A.1
Heiner, M.2
Koch, I.3
-
11
-
-
0035812883
-
Stochastic kinetic analysis of the Escherichia coli stress circuit using σ32-trageted antisense
-
Srivastava R Peterson MS Bentley WE Stochastic kinetic analysis of the Escherichia coli stress circuit using σ32-trageted antisense Biotechnology and Bioengineering 2001 1 75 120-129
-
(2001)
Biotechnology and Bioengineering
, vol.1
, Issue.75
, pp. 120-129
-
-
Srivastava, R.1
Peterson, M.S.2
Bentley, W.E.3
-
13
-
-
0345170901
-
Quantitative Petri net model of gene regulated metabolic networks in the cell
-
12954095
-
Chen M Hofestädt R Quantitative Petri net model of gene regulated metabolic networks in the cell In Silico Biology 2003 3 3 347-365 12954095
-
(2003)
In Silico Biology
, vol.3
, Issue.3
, pp. 347-365
-
-
Chen, M.1
Hofestädt, R.2
-
14
-
-
23744463967
-
Reconstructing the regulatory network controlling commitment and sporulation in Physarum polycephalum based on hierarchical Petri Net modelling and simulation
-
15904935
-
Marwan W Sujatha A Starostzik C Reconstructing the regulatory network controlling commitment and sporulation in Physarum polycephalum based on hierarchical Petri Net modelling and simulation Journal of Theoretical Biology 2005 236 4 349-365 15904935
-
(2005)
Journal of Theoretical Biology
, vol.236
, Issue.4
, pp. 349-365
-
-
Marwan, W.1
Sujatha, A.2
Starostzik, C.3
-
15
-
-
27544501653
-
Qualitative modelling of regulated metabolic pathways: Application to the tryptophan biosynthesis in E.coli
-
Simão E Remy E Thieffry D Chaouiya C Qualitative modelling of regulated metabolic pathways: Application to the tryptophan biosynthesis in E.coli Bioinformatics 2005 21 Suppl 2 190-196
-
(2005)
Bioinformatics
, vol.21
, Issue.SUPPL. 2
, pp. 190-196
-
-
Simão, E.1
Remy, E.2
Thieffry, D.3
Chaouiya, C.4
-
16
-
-
34548302044
-
Petri net modelling of biological networks
-
17626066
-
Chaouiya C Petri net modelling of biological networks Briefings in Bioinformatics 2007 8 4 210-219 17626066
-
(2007)
Briefings in Bioinformatics
, vol.8
, pp. 210-219
-
-
Chaouiya, C.1
-
17
-
-
21644439156
-
Modeling and simulation of molecular biology systems using Petri nets: Modeling goals of various approaches
-
15617157
-
Hardy S Robillard P Modeling and simulation of molecular biology systems using Petri nets: Modeling goals of various approaches J Bioinform Comput Biol 2004 2 4 595-613 15617157
-
(2004)
J Bioinform Comput Biol
, vol.2
, pp. 595-613
-
-
Hardy, S.1
Robillard, P.2
-
19
-
-
84889394191
-
Petri Nets in Biological Network Analysis
-
Wiley & Sons Book Series on Bioinformatics Junker B, Schreiber F
-
Koch I Heiner M Petri Nets in Biological Network Analysis Analysis of biological networks Wiley & Sons Book Series on Bioinformatics Junker B, Schreiber F 2008 139-179
-
(2008)
Analysis of Biological Networks
, pp. 139-179
-
-
Koch, I.1
Heiner, M.2
-
21
-
-
1342265605
-
An approach for dividing models of biological reaction networks into functional units
-
Ederer M Sauter T Bullinger E Gilles ED Allgöwer F An approach for dividing models of biological reaction networks into functional units Simulation 2003 79 12 703-716
-
(2003)
Simulation
, vol.79
, Issue.12
, pp. 703-716
-
-
Ederer, M.1
Sauter, T.2
Bullinger, E.3
Gilles, E.D.4
Allgöwer, F.5
-
22
-
-
4444234772
-
Decomposition of metabolic network into functional modules based on the global connectivity structure of reaction graph
-
15037506
-
Ma H Zhao X Yuan Y Zeng A Decomposition of metabolic network into functional modules based on the global connectivity structure of reaction graph Bioinformatics 2004 20 12 1870-1876 15037506
-
(2004)
Bioinformatics
, vol.20
, pp. 1870-1876
-
-
Ma, H.1
Zhao, X.2
Yuan, Y.3
Zeng, A.4
-
24
-
-
41549085829
-
Petri net modelling of gene regulation of the Duchenne muscular dystrophy
-
Grunwald S Speer A Ackermann J Koch I Petri net modelling of gene regulation of the Duchenne muscular dystrophy J BioSystems 2008 92: 2 10.1016
-
(2008)
J BioSystems
, vol.92
, Issue.2
-
-
Grunwald, S.1
Speer, A.2
Ackermann, J.3
Koch, I.4
-
27
-
-
0024645936
-
Petri nets: Properties, analysis and applications
-
Murata T Petri nets: Properties, analysis and applications Proceedings of the IEEE 1989 541-580
-
(1989)
Proceedings of the IEEE
, pp. 541-580
-
-
Murata, T.1
-
33
-
-
25144456056
-
Computational cluster validation in post-genomic data analysis
-
15914541
-
Handl J Knowles J Kell DB Computational cluster validation in post-genomic data analysis Bioinformatics 2005 21 15 3201-3212 15914541
-
(2005)
Bioinformatics
, vol.21
, pp. 3201-3212
-
-
Handl, J.1
Knowles, J.2
Kell, D.B.3
-
36
-
-
0023375195
-
The Neighbor-Joining method: A new method for reconstructing phylogenetic trees
-
Saitou N Nei M The Neighbor-Joining method: A new method for reconstructing phylogenetic trees Molecular Biology and Evolution 1987 4 406-425
-
(1987)
Molecular Biology and Evolution
, vol.4
, pp. 406-425
-
-
Saitou, N.1
Nei, M.2
-
40
-
-
0023453329
-
Silhouettes: A graphical aid to the interpretation and validation of cluster analysis
-
Rousseeuw PJ Silhouettes: A graphical aid to the interpretation and validation of cluster analysis Journal of Computational and Applied Mathematics 1987 20 53-65
-
(1987)
Journal of Computational and Applied Mathematics
, vol.20
, pp. 53-65
-
-
Rousseeuw, P.J.1
-
41
-
-
84941155240
-
Well separated clusters and optimal fuzzy partitions
-
Dunn J Well separated clusters and optimal fuzzy partitions Journal of Cybernetics 1974 4 95-104
-
(1974)
Journal of Cybernetics
, vol.4
, pp. 95-104
-
-
Dunn, J.1
-
44
-
-
4544300880
-
A walk-through of the yeast mating pheromone response pathway
-
15374648
-
Bardwell L A walk-through of the yeast mating pheromone response pathway Peptides 2004 25 1465-1476 15374648
-
(2004)
Peptides
, vol.25
, pp. 1465-1476
-
-
Bardwell, L.1
-
45
-
-
9444277208
-
Pheromone signaling mechanisms in yeast: A prototypical sex machine
-
15567849
-
Wang Y Dohlman H Pheromone signaling mechanisms in yeast: A prototypical sex machine Science 2004 306 1508-1509 15567849
-
(2004)
Science
, vol.306
, pp. 1508-1509
-
-
Wang, Y.1
Dohlman, H.2
-
46
-
-
20144384882
-
Lost in transcription: P21 repression, mechanisms, and consequences
-
15899785
-
Gartel AL Radhakrishnan SK Lost in transcription: P21 repression, mechanisms, and consequences Cancer Research 2005 65 10 3980-3985 15899785
-
(2005)
Cancer Research
, vol.65
, Issue.10
, pp. 3980-3985
-
-
Gartel, A.L.1
Radhakrishnan, S.K.2
-
47
-
-
0000743235
-
State of the art in pattern recognition
-
Nagy G State of the art in pattern recognition Proceedings of the IEEE 1969 56 836-862
-
(1969)
Proceedings of the IEEE
, vol.56
, pp. 836-862
-
-
Nagy, G.1
-
48
-
-
84886759250
-
-
Snoopy http://www-dssz.informatik.tu-cottbus.de/~wwwdssz/
-
Snoopy
-
-
-
50
-
-
84886757984
-
-
PInA http://www-dssz.informatik.tu-cottbus.de/~wwwdssz/
-
PInA
-
-
-
51
-
-
84886761935
-
-
Wilmascope http://wilma.sourceforge.net/
-
Wilmascope
-
-
|