-
3
-
-
0001568871
-
-
Apostolakis, J.; Ferrara, P.; Calfish, A. J. Chem. Phys. 1999, 110, 2099-2108.
-
(1999)
J. Chem. Phys.
, vol.110
, pp. 2099-2108
-
-
Apostolakis, J.1
Ferrara, P.2
Calfish, A.3
-
5
-
-
0036681394
-
-
Felts, A.; Gallicchio, E.; Wallqvist, A.; Levy, R. Proteins: Struct., Funct., Genet. 2002, 48, 404-422.
-
(2002)
Proteins: Struct., Funct., Genet.
, vol.48
, pp. 404-422
-
-
Felts, A.1
Gallicchio, E.2
Wallqvist, A.3
Levy, R.4
-
9
-
-
1442322419
-
-
Friesner, R., Ed.; John Wiley & Sons: New York, (I. Prigogine and S. A. Rice, series editors)
-
Wallqvist, A.; Gallicchio, E.; Felts, A. K.; Levy, R. M. In Computational Methods for Protein Folding: A Special Volume of Advances in Chemical Physics, Vol. 120; Friesner, R., Ed.; John Wiley & Sons: New York, 2002 (I. Prigogine and S. A. Rice, series editors).
-
(2002)
Computational Methods for Protein Folding: A Special Volume of Advances in Chemical Physics
, vol.120
-
-
Wallqvist, A.1
Gallicchio, E.2
Felts, A.K.3
Levy, A.4
-
10
-
-
32844457567
-
-
Sitkoff, D.; Sharp, K. A.; Honig, B. J. Phys. Chem. 1994, 98, 1978-1988.
-
(1994)
J. Phys. Chem.
, vol.98
, pp. 1978-1988
-
-
Sitkoff, D.1
Sharp, K.A.2
Honig, B.3
-
11
-
-
0030180875
-
-
Marten, B.; Kim, K.; Cortis, C.; Friesner, R. A.; Murphy, R. B.; Ringnalda, M. N.; Sitkoff, D.; Honig, B. J. Phys. Chem. 1996, 100, 11775.
-
(1996)
J. Phys. Chem.
, vol.100
, pp. 11775
-
-
Marten, B.1
Kim, K.2
Cortis, C.3
Friesner, R.A.4
Murphy, R.B.5
Ringnalda, M.N.6
Sitkoff, D.7
Honig, B.8
-
12
-
-
0037089017
-
-
Gallicchio, E.; Zhang, L.; Levy, R. J. Comput. Chem. 2002, 23, 517-529.
-
(2002)
J. Comput. Chem.
, vol.23
, pp. 517-529
-
-
Gallicchio, E.1
Zhang, L.2
Levy, R.3
-
13
-
-
0035950792
-
-
Zhou, R.; Friesner, R.; Ghosh, A.; Rizzo, R.; Jorgensen, W.; Levy, R. J. Phys. Chem. 2001. 105, 10388-10397.
-
(2001)
J. Phys. Chem.
, vol.105
, pp. 10388-10397
-
-
Zhou, R.1
Friesner, R.2
Ghosh, A.3
Rizzo, R.4
Jorgensen, W.5
Levy, R.6
-
14
-
-
0023338543
-
-
Ooi, T.; Oobatake, M.; Nemethy, G.; Sheraga, A. Proc. Natl. Acad. Sci. U.S.A. 1987, 84, 3086.
-
(1987)
Proc. Natl. Acad. Sci. U.S.A.
, vol.84
, pp. 3086
-
-
Ooi, T.1
Oobatake, M.2
Nemethy, G.3
Sheraga, A.4
-
16
-
-
0011334778
-
-
Lazaridis, T.; Archontis, G.; Karplus, M. Adv. Protein Chem. 1995, 47, 262-344.
-
(1995)
Adv. Protein Chem.
, vol.47
, pp. 262-344
-
-
Lazaridis, T.1
Archontis, G.2
Karplus, M.3
-
17
-
-
20644436466
-
-
Zhang, L.; Gallicchio, E.; Friesner, R.; Levy, R. M. J. Comput. Chem. 2001, 22, 591-607.
-
(2001)
J. Comput. Chem.
, vol.22
, pp. 591-607
-
-
Zhang, L.1
Gallicchio, E.2
Friesner, R.3
Levy, R.M.4
-
18
-
-
33748390341
-
-
Hawkins, G. D.; Cramer, C. J. Truhlar, D. G. J. Phys. Chem. 1996, 100, 19824-19839.
-
(1996)
J. Phys. Chem.
, vol.100
, pp. 19824-19839
-
-
Hawkins, G.D.1
Cramer, C.J.2
Truhlar, D.G.3
-
19
-
-
4043171970
-
-
Qiu, D.; Shenkin, P. S.; Hollinger, F. P.; Still, C. W. J. Phys. Chem. A 1997, 101, 3005-3014.
-
(1997)
J. Phys. Chem. A.
, vol.101
, pp. 3005-3014
-
-
Qiu, D.1
Shenkin, P.S.2
Hollinger, F.P.3
Still, C.W.4
-
25
-
-
0027475726
-
-
Williams, D. H.; Searle, M. S.; Mackay, J. P.; Gerhard, U.; Maplestone, R. A. Proc. Natl. Acad. Sci. U.S.A. 1993, 90, 1172-78.
-
(1993)
Proc. Natl. Acad. Sci. U.S.A.
, vol.90
, pp. 1172-1178
-
-
Williams, D.H.1
Searle, M.S.2
Mackay, J.P.3
Gerhard, U.4
Maplestone, R.A.5
-
26
-
-
0031008575
-
-
Froloff, N.; Windemuth, A.; Honig, B. Protein Sci. 1997, 6, 1293-1301.
-
(1997)
Protein Sci.
, vol.6
, pp. 1293-1301
-
-
Froloff, N.1
Windemuth, A.2
Honig, B.3
-
28
-
-
0034212858
-
-
Lee, M.; Duan, Y.; Kollman, P. Proteins 2000, 39, 309-316.
-
(2000)
Proteins
, vol.39
, pp. 309-316
-
-
Lee, M.1
Duan, Y.2
Kollman, P.3
-
29
-
-
0038833031
-
-
Hünenberger, P.; Helms, V.; Narayana, N.; Taylor, S.; McCammon, J. Biochemistry 1999, 38, 2358-2366.
-
(1999)
Biochemistry
, vol.38
, pp. 2358-2366
-
-
Hünenberger, P.1
Helms, V.2
Narayana, N.3
Taylor, S.4
McCammon, J.5
-
31
-
-
0344778061
-
-
Still, W. C. Tempczyk, A.; Hawley, R. C.; Hendrikson, T. J. Am. Chem. Soc. 1990, 112, 6127-6129.
-
(1990)
J. Am. Chem. Soc.
, vol.112
, pp. 6127-6129
-
-
Still, W.C.1
Tempczyk, A.2
Hawley, R.C.3
Hendrikson, T.4
-
32
-
-
0033135619
-
-
Rapp, C. S.; Friesner, R. A. Proteins: Struct., Funct., Genet. 1999, 35, 173-183.
-
(1999)
Proteins: Struct., Funct., Genet.
, vol.35
, pp. 173-183
-
-
Rapp, C.S.1
Friesner, R.A.2
-
33
-
-
0035976385
-
-
Fogolari, F.; Esposito, G.; Viglino, P.; Molinari, H. J. Comput. Chem. 2001, 22, 1830-1842.
-
(2001)
J. Comput. Chem.
, vol.22
, pp. 1830-1842
-
-
Fogolari, F.1
Esposito, G.2
Viglino, P.3
Molinari, H.4
-
35
-
-
84962439423
-
-
Curutchet, C.; Cramer, C.; Truhlar, D.; Ruiz-Lòpez, M.; Rinaldi, D.; Orozco, M.; Luque, F. J. Comput. Chem. 2003, 24, 284-297.
-
(2003)
J. Comput. Chem.
, vol.24
, pp. 284-297
-
-
Curutchet, C.1
Cramer, C.2
Truhlar, D.3
Ruiz-Lòpez, M.4
Rinaldi, D.5
Orozco, M.6
Luque, F.7
-
38
-
-
0016352763
-
-
Chothia, C. Nature 1974, 248, 338.
-
(1974)
Nature
, vol.248
, pp. 338
-
-
Chothia, C.1
-
39
-
-
0000398347
-
-
Reynolds, J. A.; Gilbert, D. B.; Tanford, C. Proc. Natl. Acad. Sci. U.S.A. 1974, 71, 2925.
-
(1974)
Proc. Natl. Acad. Sci. U.S.A.
, vol.71
, pp. 2925
-
-
Reynolds, J.A.1
Gilbert, D.B.2
Tanford, C.3
-
41
-
-
0011960339
-
-
Lum, K.; Chandler, D.; Weeks, J. D. J. Phys. Chem. B 1999, 103, 4570-4577.
-
(1999)
J. Phys. Chem. B
, vol.103
, pp. 4570-4577
-
-
Lum, K.1
Chandler, D.2
Weeks, J.D.3
-
42
-
-
0034227795
-
-
Gallicchio, E.; Kubo, M. M.; Levy, R. M. J. Phys. Chem. B 2000, 104, 6271-6285.
-
(2000)
J. Phys. Chem. B
, vol.104
, pp. 6271-6285
-
-
Gallicchio, E.1
Kubo, M.M.2
Levy, R.M.3
-
43
-
-
0032867608
-
-
Ashbaugh, H. S.; Kaler, E. W.; Paulaitis, M. E. J. Am. Chem. Soc. 1999, 121, 9243-9244.
-
(1999)
J. Am. Chem. Soc.
, vol.121
, pp. 9243-9244
-
-
Ashbaugh, H.S.1
Kaler, E.W.2
Paulaitis, M.E.3
-
46
-
-
0027936280
-
-
Sitkoff, D.; Sharp, K. A.; Honig, B. Biophys. Chem. 1994, 51, 397-409.
-
(1994)
Biophys. Chem.
, vol.51
, pp. 397-409
-
-
Sitkoff, D.1
Sharp, K.A.2
Honig, B.3
-
47
-
-
0035281357
-
-
Elcock, A.; Sept, D.; McCammon, J. J. Phys. Chem. B 2001, 105, 1504-1518.
-
(2001)
J. Phys. Chem. B
, vol.105
, pp. 1504-1518
-
-
Elcock, A.1
Sept, D.2
McCammon, J.3
-
51
-
-
0001763654
-
-
Irisa, M.; Nagayama, K.; Hirata, F. Chem. Phys. Lett. 1993, 207, 430-5.
-
(1993)
Chem. Phys. Lett.
, vol.207
, pp. 430-435
-
-
Irisa, M.1
Nagayama, K.2
Hirata, F.3
-
53
-
-
0000628154
-
-
Hummer, G.; Garde, S.; García, A. E.; Paulaitis, M. E.; Pratt, L. R. Phys. Chem. B 1998, 102, 10469-82.
-
(1998)
Phys. Chem. B.
, vol.102
, pp. 10469-10482
-
-
Hummer, G.1
Garde, S.2
García, A.E.3
Paulaitis, M.E.4
Pratt, L.R.5
-
57
-
-
0031849950
-
-
Ashbaugh, H. S.; Kaler, E. W.; Paulaitis, M. E. Biophys. J. 1998, 75, 755-768.
-
(1998)
Biophys. J.
, vol.75
, pp. 755-768
-
-
Ashbaugh, H.S.1
Kaler, E.W.2
Paulaitis, M.E.3
-
58
-
-
0030572340
-
-
Pitarch, J.; Moliner, V.; Pascual-Ahuir, J.; Silla, A.; Tuñón, I. J. Phys. Chem. 1996, 100, 9955-9959.
-
(1996)
J. Phys. Chem.
, vol.100
, pp. 9955-9959
-
-
Pitarch, J.1
Moliner, V.2
Pascual-Ahuir, J.3
Silla, A.4
Tuñón, I.5
-
61
-
-
36849103820
-
-
Weeks, J. D.; Chandler, D.; Andersen, H. C. J. Chem. Phys. 1971, 54, 5237-47.
-
(1971)
J. Chem. Phys.
, vol.54
, pp. 5237-5247
-
-
Weeks, J.D.1
Chandler, D.2
Andersen, H.C.3
-
62
-
-
0020621373
-
-
Chandler, D.; Weeks, J. D.; Andersen, H. C. Science 1983, 220, 787-794.
-
(1983)
Science
, vol.220
, pp. 787-794
-
-
Chandler, D.1
Weeks, J.D.2
Andersen, H.C.3
-
64
-
-
0035913512
-
-
Wallqvist, A.; Gallicchio, E.; Levy, R. M. J. Phys. Chem. B 2001, 105, 6745-6753.
-
(2001)
J. Phys. Chem. B
, vol.105
, pp. 6745-6753
-
-
Wallqvist, A.1
Gallicchio, E.2
Levy, R.M.3
-
65
-
-
84986532547
-
-
Kitchen, D. B.; Hirata, F.; Kofke, D. A.; Westbrook, J. D.; Yormush, M.; Levy, R. M. J. Comput. Chem. 1990, 11, 1169-1180.
-
(1990)
J. Comput. Chem.
, vol.11
, pp. 1169-1180
-
-
Kitchen, D.B.1
Hirata, F.2
Kofke, D.A.3
Westbrook, J.D.4
Yormush, M.5
Levy, R.M.6
-
66
-
-
0029912748
-
-
Jorgensen, W. L.; Maxwell, D. S.; Tirado-Rives, J. J. Am. Chem. Soc. 1996, 118, 11225-11236.
-
(1996)
J. Am. Chem. Soc.
, vol.118
, pp. 11225-11236
-
-
Jorgensen, W.L.1
Maxwell, D.S.2
Tirado-Rives, J.3
-
68
-
-
20644449471
-
-
Onufriev, A.; Bashford, D.; Case, D. A. J. Phys. Chem. B 2000, 104, 3712-3720.
-
(2000)
J. Phys. Chem. B
, vol.104
, pp. 3712-3720
-
-
Onufriev, A.1
Bashford, D.2
Case, D.A.3
-
71
-
-
0032612579
-
-
Simons, K. T.; Bonneau, R.; Ruczinski, I.; Baker, D. Proteins: Struct., Funct., Genet. 1999, S3, 171-176.
-
(1999)
Proteins: Struct., Funct., Genet.
, vol.S3
, pp. 171-176
-
-
Simons, K.T.1
Bonneau, R.2
Ruczinski, I.3
Baker, D.4
-
72
-
-
0041993266
-
-
http://www.bmm.icnet.uk/docking.
-
-
-
-
73
-
-
0042994947
-
-
Rizzo, R.; Tirado-Rives, J.; Jorgensen, W. J. Med. Chem. 2001, 44, 145154.
-
(2001)
J. Med. Chem.
, vol.44
, pp. 145154
-
-
Rizzo, R.1
Tirado-Rives, J.2
Jorgensen, W.3
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