메뉴 건너뛰기




Volumn 301, Issue 3, 2000, Pages 713-736

Automatic protein design with all atom force-fields by exact and heuristic optimization

Author keywords

Branch and Bound; De novo protein design; Dead end elimination; Side chain modeling

Indexed keywords

PROTEIN G; UBIQUITIN;

EID: 0034682869     PISSN: 00222836     EISSN: None     Source Type: Journal    
DOI: 10.1006/jmbi.2000.3984     Document Type: Article
Times cited : (106)

References (59)
  • 1
    • 85031614385 scopus 로고
    • Computations of surface areas and energies in the field of macromolecules. PhD thesis, Universite Libre de Bruxelles, Belgium
    • (1990)
    • Alard, P.1
  • 6
    • 0016352763 scopus 로고
    • Hydrophobic bonding and accessible surface area in proteins
    • (1974) Nature , vol.248 , pp. 338-339
    • Chothia, C.1
  • 7
    • 0022706389 scopus 로고
    • The relation between the divergence of sequence and structure in proteins
    • (1986) EMBO J. , vol.5 , pp. 823-826
    • Chothia, C.1    Lesk, A.2
  • 22
    • 0008032945 scopus 로고
    • Computers and Intractability, a Guide to the Theory of NP-Completeness, Freeman, San Francisco
    • (1979)
    • Garey, M.R.1    Johnson, D.S.2
  • 24
    • 0028212927 scopus 로고
    • Efficient rotamer elimination applied to protein side-chains and related spin glasses
    • (1994) Biophys. J. , vol.66 , pp. 1335-1340
    • Goldstein, R.F.1
  • 25
    • 0025359825 scopus 로고
    • Synthesis, purification and initial structural characterisation of Octarellin, a de-novo polypeptide modelled on the alpha/beta barrel proteins
    • (1990) Protein Eng. , vol.3 , pp. 259-266
    • Goraj, K.1    Renard, A.2    Martial, J.A.3
  • 26
    • 0001686478 scopus 로고    scopus 로고
    • Radical performance enhancements for combinatorial optimisation algorithms based on the dead-end elimination theorem
    • (1998) J. Comp. Chem. , vol.19 , pp. 1505-1514
    • Gordon, D.B.1    Mayo, S.L.2
  • 30
    • 85031614180 scopus 로고
    • Constraint Satisfaction in Logic Programming, MIT Press, Cambridge, Massachusetts
    • (1989)
    • Hentenryck, P.V.1
  • 33
    • 0028220365 scopus 로고
    • De novo protein design using pair-wise potentials and a genetic algorithm
    • (1994) Protein Sci. , vol.3 , pp. 567-574
    • Jones, D.T.1
  • 36
    • 0028343413 scopus 로고
    • Application of a self-consistent mean field theory to predict protein side-chains conformation and estimate their conformational entropy
    • (1994) J. Mol. Biol. , vol.239 , pp. 249-275
    • Koehl, P.1    Delarue, M.2
  • 49
    • 0021108287 scopus 로고
    • Molecular Technology. Designing proteins and peptides
    • (1983) Nature , vol.301 , pp. 200
    • Pabo, C.1
  • 51
    • 0023155210 scopus 로고
    • Tertiary templates for proteins. Use of packing criteria in the enumeration of allowed sequences for different structural classes
    • (1987) J. Mol. Biol. , vol.193 , pp. 775-791
    • Ponder, J.W.1    Richards, F.M.2
  • 57
    • 0030762021 scopus 로고    scopus 로고
    • Coupling backbone flexibility and amino acid sequence selection in protein design
    • (1997) Protein Sci. , vol.6 , pp. 1701-1707
    • Su, A.1    Mayo, S.L.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.