-
2
-
-
33750287639
-
Direct demonstration of an adaptive constraint
-
10.1126/science.1133479. 17053145
-
Direct demonstration of an adaptive constraint. SP Miller M Lunzer AM Dean, Science 2006 314 5798 458 461 10.1126/science.1133479 17053145
-
(2006)
Science
, vol.314
, Issue.5798
, pp. 458-461
-
-
Miller, S.P.1
Lunzer, M.2
Dean, A.M.3
-
3
-
-
33745376579
-
Evo-devo and constraints on selection
-
Evo-devo and constraints on selection. PM Brakefield, Trends in Ecology & Evolution 2006 21 7 362 368
-
(2006)
Trends in Ecology & Evolution
, vol.21
, Issue.7
, pp. 362-368
-
-
Brakefield, P.M.1
-
5
-
-
0001690283
-
2 Concepts of constraint - Adaptationism and the challenge from developmental biology
-
-2 Concepts of Constraint - Adaptationism and the Challenge from Developmental Biology. R Amundson, Philosophy of Science 1994 61 4 556 578
-
(1994)
Philosophy of Science
, vol.61
, Issue.4
, pp. 556-578
-
-
Amundson, R.1
-
6
-
-
85163169203
-
Developmental constraints and evolution
-
Developmental Constraints and Evolution. JM Smith R Burian S Kauffman P Alberch J Campbell B Goodwin R Lande D Raup L Wolpert, Quarterly Review of Biology 1985 60 3 265 287
-
(1985)
Quarterly Review of Biology
, vol.60
, Issue.3
, pp. 265-287
-
-
Smith, J.M.1
Burian, R.2
Kauffman, S.3
Alberch, P.4
Campbell, J.5
Goodwin, B.6
Lande, R.7
Raup, D.8
Wolpert, L.9
-
9
-
-
85163169203
-
Developmental constraints and evolution
-
Developmental Constraints and Evolution. J Maynard-Smith R Burian S Kauffman P Alberch J Campbell B Goodwin R Lande D Raup L Wolpert, Quarterly Review of Biology 1985 60 3 265 287
-
(1985)
Quarterly Review of Biology
, vol.60
, Issue.3
, pp. 265-287
-
-
Maynard-Smith, J.1
Burian, R.2
Kauffman, S.3
Alberch, P.4
Campbell, J.5
Goodwin, B.6
Lande, R.7
Raup, D.8
Wolpert, L.9
-
10
-
-
0035823264
-
The small world inside large metabolic networks
-
The small world inside large metabolic networks. A Wagner D Fell, Proc Roy Soc London Ser B 2001 280 1803 1810
-
(2001)
Proc Roy Soc London ser B
, vol.280
, pp. 1803-1810
-
-
Wagner, A.1
Fell, D.2
-
11
-
-
0033080396
-
Detection of elementary flux modes in biochemical networks: A promising tool for pathway analysis and metabolic engineering
-
10087604
-
Detection of elementary flux modes in biochemical networks: a promising tool for pathway analysis and metabolic engineering. S Schuster T Dandekar DA Fell, Trends in Biotechnology 1999 17 2 53 60 10087604
-
(1999)
Trends in Biotechnology
, vol.17
, Issue.2
, pp. 53-60
-
-
Schuster, S.1
Dandekar, T.2
Fell, D.A.3
-
12
-
-
0036100243
-
Determination of redundancy and systems properties of the metabolic network of Helicobacter pylori using genome-scale extreme pathway analysis
-
11997342
-
Determination of redundancy and systems properties of the metabolic network of Helicobacter pylori using genome-scale extreme pathway analysis. N Price J Papin B Palsson, Genome Research 2002 12 5 760 769 11997342
-
(2002)
Genome Research
, vol.12
, Issue.5
, pp. 760-769
-
-
Price, N.1
Papin, J.2
Palsson, B.3
-
14
-
-
0034519221
-
Robustness analysis of the Escherichia coli metabolic network
-
11101318
-
Robustness analysis of the Escherichia coli metabolic network. JS Edwards BO Palsson, Biotechnology Progress 2000 16 6 927 939 11101318
-
(2000)
Biotechnology Progress
, vol.16
, Issue.6
, pp. 927-939
-
-
Edwards, J.S.1
Palsson, B.O.2
-
15
-
-
2342648924
-
Integrating high-throughput and computational data elucidates bacterial networks
-
15129285
-
Integrating high-throughput and computational data elucidates bacterial networks. MW Covert EM Knight JL Reed MJ Herrgard BO Palsson, Nature 2004 429 6987 92 96 15129285
-
(2004)
Nature
, vol.429
, Issue.6987
, pp. 92-96
-
-
Covert, M.W.1
Knight, E.M.2
Reed, J.L.3
Herrgard, M.J.4
Palsson, B.O.5
-
16
-
-
33645460106
-
Chance and necessity in the evolution of minimal metabolic networks
-
16572170
-
Chance and necessity in the evolution of minimal metabolic networks. C Pal B Papp MJ Lercher P Csermely SG Oliver LD Hurst, Nature 2006 440 7084 667 670 16572170
-
(2006)
Nature
, vol.440
, Issue.7084
, pp. 667-670
-
-
Pal, C.1
Papp, B.2
Lercher, M.J.3
Csermely, P.4
Oliver, S.G.5
Hurst, L.D.6
-
17
-
-
33745107471
-
Influence of metabolic network structure and function on enzyme evolution
-
Influence of metabolic network structure and function on enzyme evolution. D Vitkup P Kharchenko A Wagner, Genome Biology 2006 7 5
-
(2006)
Genome Biology
, vol.7
, Issue.5
-
-
Vitkup, D.1
Kharchenko, P.2
Wagner, A.3
-
18
-
-
22744439567
-
The evolution of connectivity in metabolic networks
-
The evolution of connectivity in metabolic networks. T Pfeiffer OS Soyer S Bonhoeffer, Plos Biology 2005 3 7 1269 1275
-
(2005)
Plos Biology
, vol.3
, Issue.7
, pp. 1269-1275
-
-
Pfeiffer, T.1
Soyer, O.S.2
Bonhoeffer, S.3
-
20
-
-
1542288938
-
Global organization of metabolic fluxes in the bacterium Escherichia coli
-
14985762
-
Global organization of metabolic fluxes in the bacterium Escherichia coli. E Almaas B Kovacs T Vicsek ZN Oltvai AL Barabasi, Nature 2004 427 6977 839 843 14985762
-
(2004)
Nature
, vol.427
, Issue.6977
, pp. 839-843
-
-
Almaas, E.1
Kovacs, B.2
Vicsek, T.3
Oltvai, Z.N.4
Barabasi, A.L.5
-
21
-
-
28444475529
-
Adaptive evolution of bacterial metabolic networks by horizontal gene transfer
-
16311593
-
Adaptive evolution of bacterial metabolic networks by horizontal gene transfer. C Pal B Papp MJ Lercher, Nature Genetics 2005 37 12 1372 1375 16311593
-
(2005)
Nature Genetics
, vol.37
, Issue.12
, pp. 1372-1375
-
-
Pal, C.1
Papp, B.2
Lercher, M.J.3
-
30
-
-
0037342134
-
Stoichiometric design of metabolic networks: Multifunctionality, clusters, optimization, weak and strong robustness
-
12675335
-
Stoichiometric design of metabolic networks: Multifunctionality, clusters, optimization, weak and strong robustness. O Ebenhoh R Heinrich, Bulletin of Mathematical Biology 2003 65 2 323 357 12675335
-
(2003)
Bulletin of Mathematical Biology
, vol.65
, Issue.2
, pp. 323-357
-
-
Ebenhoh, O.1
Heinrich, R.2
-
31
-
-
0033055592
-
The modularity of biological regulatory networks
-
10235650
-
The modularity of biological regulatory networks. D Thieffry D Romero, Biosystems 1999 50 #1 49 59 10235650
-
(1999)
Biosystems
, vol.50
, Issue.1
, pp. 49-59
-
-
Thieffry, D.1
Romero, D.2
-
32
-
-
0037174671
-
Transcriptional regulatory networks in Saccharomyces cerevisiae
-
12399584
-
Transcriptional regulatory networks in Saccharomyces cerevisiae. T Lee N Rinaldi F Robert D Odom Z Bar-Joseph G Gerber N Hannett C Harbison C Thompson I Simon, et al. Science 2002 298 5594 799 804 12399584
-
(2002)
Science
, vol.298
, Issue.5594
, pp. 799-804
-
-
Lee, T.1
Rinaldi, N.2
Robert, F.3
Odom, D.4
Bar-Joseph, Z.5
Gerber, G.6
Hannett, N.7
Harbison, C.8
Thompson, C.9
Simon, I.10
-
33
-
-
0037161731
-
Comparative assessment of large-scale data sets of protein-protein interactions
-
12000970
-
Comparative assessment of large-scale data sets of protein-protein interactions. C von Mering R Krause B Snel M Cornell SG Oliver S Fields P Bork, Nature 2002 417 6887 399 403 12000970
-
(2002)
Nature
, vol.417
, Issue.6887
, pp. 399-403
-
-
Von Mering, C.1
Krause, R.2
Snel, B.3
Cornell, M.4
Oliver, S.G.5
Fields, S.6
Bork, P.7
-
36
-
-
0032919364
-
KEGG: Kyoto Encyclopedia of Genes and Genomes
-
9847135
-
KEGG: Kyoto Encyclopedia of Genes and Genomes. H Ogata S Goto K Sato W Fujibuchi H Bono M Kanehisa, Nucleic Acids Research 1999 27 1 29 34 9847135
-
(1999)
Nucleic Acids Research
, vol.27
, Issue.1
, pp. 29-34
-
-
Ogata, H.1
Goto, S.2
Sato, K.3
Fujibuchi, W.4
Bono, H.5
Kanehisa, M.6
-
37
-
-
38549117301
-
The MetaCyc Database of metabolic pathways and enzymes and the BioCyc collection of Pathway/Genome Databases
-
17965431
-
The MetaCyc Database of metabolic pathways and enzymes and the BioCyc collection of Pathway/Genome Databases. R Caspi H Foerster CA Fulcher P Kaipa M Krummenacker M Latendresse S Paley SY Rhee AG Shearer C Tissier, et al. Nucleic Acids Research 2008 36 623 D631 17965431
-
(2008)
Nucleic Acids Research
, vol.36
-
-
Caspi, R.1
Foerster, H.2
Fulcher, C.A.3
Kaipa, P.4
Krummenacker, M.5
Latendresse, M.6
Paley, S.7
Rhee, S.Y.8
Shearer, A.G.9
Tissier, C.10
-
40
-
-
0037313750
-
Genome-scale reconstruction of the Saccharomyces cerevisiae metabolic network
-
12566402
-
Genome-scale reconstruction of the Saccharomyces cerevisiae metabolic network. J Forster I Famili P Fu B Palsson J Nielsen, Genome Research 2003 13 244 253 12566402
-
(2003)
Genome Research
, vol.13
, pp. 244-253
-
-
Forster, J.1
Famili, I.2
Fu, P.3
Palsson, B.4
Nielsen, J.5
-
41
-
-
25444467580
-
Large-scale C-13-flux analysis reveals mechanistic principles of metabolic network robustness to null mutations in yeast
-
15960801
-
Large-scale C-13-flux analysis reveals mechanistic principles of metabolic network robustness to null mutations in yeast. LM Blank L Kuepfer U Sauer, Genome Biology 2005 6 6 49 15960801
-
(2005)
Genome Biology
, vol.6
, Issue.6
, pp. 1849
-
-
Blank, L.M.1
Kuepfer, L.2
Sauer, U.3
-
42
-
-
33748352373
-
Multiple knockout analysis of genetic robustness in the yeast metabolic network
-
16941010
-
Multiple knockout analysis of genetic robustness in the yeast metabolic network. D Deutscher I Meilijson M Kupiec E Ruppin, Nature Genetics 2006 38 9 993 998 16941010
-
(2006)
Nature Genetics
, vol.38
, Issue.9
, pp. 993-998
-
-
Deutscher, D.1
Meilijson, I.2
Kupiec, M.3
Ruppin, E.4
-
43
-
-
0033529707
-
Functional characterization of the S. cerevisiae genome by gene deletion and parallel analysis
-
10436161
-
Functional characterization of the S. cerevisiae genome by gene deletion and parallel analysis. EA Winzeler DD Shoemaker A Astromoff H Liang K Anderson B Andre R Bangham R Benito JD Boeke H Bussey, et al. Science 1999 285 #5429 901 906 10436161
-
(1999)
Science
, vol.285
, Issue.5429
, pp. 901-906
-
-
Winzeler, E.A.1
Shoemaker, D.D.2
Astromoff, A.3
Liang, H.4
Anderson, K.5
Andre, B.6
Bangham, R.7
Benito, R.8
Boeke, J.D.9
Bussey, H.10
-
44
-
-
0037173615
-
Functional profiling of the Saccharomyces cerevisiae genome
-
12140549
-
Functional profiling of the Saccharomyces cerevisiae genome. G Giaever AM Chu L Ni C Connelly L Riles S Veronneau S Dow A Lucau-Danila K Anderson B Andre, et al. Nature 2002 418 6896 387 391 12140549
-
(2002)
Nature
, vol.418
, Issue.6896
, pp. 387-391
-
-
Giaever, G.1
Chu, A.M.2
Ni, L.3
Connelly, C.4
Riles, L.5
Veronneau, S.6
Dow, S.7
Lucau-Danila, A.8
Anderson, K.9
Andre, B.10
-
45
-
-
0033580813
-
Systems properties of the Haemophilus influenzae Rd metabolic genotype
-
10364169
-
Systems properties of the Haemophilus influenzae Rd metabolic genotype. JS Edwards BO Palsson, Journal of Biological Chemistry 1999 274 #25 17410 17416 10364169
-
(1999)
Journal of Biological Chemistry
, vol.274
, Issue.25
, pp. 17410-17416
-
-
Edwards, J.S.1
Palsson, B.O.2
-
46
-
-
0034625143
-
The Escherichia coli MG1655 in silico metabolic genotype: Its definition, characteristics, and capabilities
-
10805808
-
The Escherichia coli MG1655 in silico metabolic genotype: Its definition, characteristics, and capabilities. JS Edwards BO Palsson, Proceedings of the National Academy of Sciences of the United States of America 2000 97 10 5528 5533 10805808
-
(2000)
Proceedings of the National Academy of Sciences of the United States of America
, vol.97
, Issue.10
, pp. 5528-5533
-
-
Edwards, J.S.1
Palsson, B.O.2
-
47
-
-
2942604422
-
Network analysis of metabolic enzyme evolution in Escherichia coli
-
15113413
-
Network analysis of metabolic enzyme evolution in Escherichia coli. S Light P Kraulis, Bmc Bioinformatics 2004 5 15 15113413
-
(2004)
Bmc Bioinformatics
, vol.5
, pp. 15
-
-
Light, S.1
Kraulis, P.2
-
48
-
-
19444365047
-
The complement of enzymatic sets in different species
-
15896806
-
The complement of enzymatic sets in different species. S Freilich RV Spriggs RA George B Al-Lazikani M Swindells JM Thornton, Journal of Molecular Biology 2005 349 4 745 763 15896806
-
(2005)
Journal of Molecular Biology
, vol.349
, Issue.4
, pp. 745-763
-
-
Freilich, S.1
Spriggs, R.V.2
George, R.A.3
Al-Lazikani, B.4
Swindells, M.5
Thornton, J.M.6
-
49
-
-
37549018487
-
Environmental variability and modularity of bacterial metabolic networks
-
17888177
-
Environmental variability and modularity of bacterial metabolic networks. M Parter N Kashtan U Alon, BMC Evolutionary Biology 2007 7 169 17888177
-
(2007)
BMC Evolutionary Biology
, vol.7
, pp. 169
-
-
Parter, M.1
Kashtan, N.2
Alon, U.3
-
50
-
-
0033168449
-
Variation and evolution of the citric acid cycle: A genomic perspective
-
10390638
-
Variation and evolution of the citric acid cycle: a genomic perspective. MA Huynen T Dandekar P Bork, Trends in Microbiology 1999 7 7 281 291 10390638
-
(1999)
Trends in Microbiology
, vol.7
, Issue.7
, pp. 281-291
-
-
Huynen, M.A.1
Dandekar, T.2
Bork, P.3
-
51
-
-
1542286745
-
Quantifying modularity in the evolution of biomolecular systems
-
Quantifying modularity in the evolution of biomolecular systems. B Snel M Huynen, Genome Research 2004 3 391 397
-
(2004)
Genome Research
, vol.3
, pp. 391-397
-
-
Snel, B.1
Huynen, M.2
-
54
-
-
0034614924
-
Testing character correlation using pairwise comparisons on a phylogeny
-
10660474
-
Testing character correlation using pairwise comparisons on a phylogeny. WP Maddison, Journal of Theoretical Biology 2000 202 3 195 204 10660474
-
(2000)
Journal of Theoretical Biology
, vol.202
, Issue.3
, pp. 195-204
-
-
Maddison, W.P.1
-
56
-
-
0016789533
-
Gene Order of Histidine Utilization (Hut) Operons in Klebsiella-Aerogenes
-
238937
-
Gene Order of Histidine Utilization (Hut) Operons in Klebsiella- Aerogenes. RB Goldberg B Magasanik, Journal of Bacteriology 1975 122 3 1025 1031 238937
-
(1975)
Journal of Bacteriology
, vol.122
, Issue.3
, pp. 1025-1031
-
-
Goldberg, R.B.1
Magasanik, B.2
-
57
-
-
0014962418
-
Genetic Basis of Histidine Degradation in Bacillus-Subtilis
-
4990471
-
Genetic Basis of Histidine Degradation in Bacillus-Subtilis. Y Kimhi B Magasani, Journal of Biological Chemistry 1970 245 14 3545 4990471
-
(1970)
Journal of Biological Chemistry
, vol.245
, Issue.14
, pp. 3545
-
-
Kimhi, Y.1
Magasani, B.2
-
58
-
-
0015239509
-
2 Operons of Histidine Utilization System in Salmonella-Typhimurium
-
4930060
-
-2 Operons of Histidine Utilization System in Salmonella-Typhimurium. GR Smith B Magasani, Journal of Biological Chemistry 1971 246 10 3330 4930060
-
(1971)
Journal of Biological Chemistry
, vol.246
, Issue.10
, pp. 3330
-
-
Smith, G.R.1
Magasani, B.2
-
59
-
-
0034486651
-
Biosynthesis of cobalamin (vitamin B-12): A bacterial conundrum
-
11215515
-
Biosynthesis of cobalamin (vitamin B-12): a bacterial conundrum. E Raux HL Schubert MJ Warren, Cellular and Molecular Life Sciences 2000 57 13-14 1880 1893 11215515
-
(2000)
Cellular and Molecular Life Sciences
, vol.57
, Issue.13-14
, pp. 1880-1893
-
-
Raux, E.1
Schubert, H.L.2
Warren, M.J.3
-
60
-
-
39049184891
-
Inositol in bacteria and archaea
-
New York, NY: Springer Majumder AL, Biswas BB
-
Inositol in bacteria and archaea. MF Roberts, Biology of inositols and phosphoinositides Subcellular biochemistry New York, NY: Springer, Majumder AL, Biswas BB, 2006 39 103 134
-
(2006)
Biology of Inositols and Phosphoinositides Subcellular Biochemistry
, vol.39
, pp. 103-134
-
-
Roberts, M.F.1
-
61
-
-
44849098421
-
Myo-inositol catabolism in Bacillus subtilis
-
18310071
-
Myo-inositol catabolism in Bacillus subtilis. K Yoshida M Yamaguchi T Morinaga M Kinehara M Ikeuchi H Ashida Y Fujita, Journal of Biological Chemistry 2008 283 10415 10424 18310071
-
(2008)
Journal of Biological Chemistry
, vol.283
, pp. 10415-10424
-
-
Yoshida, K.1
Yamaguchi, M.2
Morinaga, T.3
Kinehara, M.4
Ikeuchi, M.5
Ashida, H.6
Fujita, Y.7
-
63
-
-
0037025191
-
An alternative flavin-dependent mechanism for thymidylate synthesis
-
12029065
-
An alternative flavin-dependent mechanism for thymidylate synthesis. H Myllykallio G Lipowski D Leduc J Filee P Forterre U Liebl, Science 2002 297 5578 105 107 12029065
-
(2002)
Science
, vol.297
, Issue.5578
, pp. 105-107
-
-
Myllykallio, H.1
Lipowski, G.2
Leduc, D.3
Filee, J.4
Forterre, P.5
Liebl, U.6
-
64
-
-
52249100797
-
An alternative menaquinone biosynthetic pathway operating in microorganisms
-
18801996
-
An alternative menaquinone biosynthetic pathway operating in microorganisms. T Hiratsuka K Furihata J Ishikawa H Yamashita N Itoh H Seto T Dairi, Science 2008 321 5896 1670 1673 18801996
-
(2008)
Science
, vol.321
, Issue.5896
, pp. 1670-1673
-
-
Hiratsuka, T.1
Furihata, K.2
Ishikawa, J.3
Yamashita, H.4
Itoh, N.5
Seto, H.6
Dairi, T.7
-
65
-
-
0347364646
-
Genome evolution reveals biochemical networks and functional modules
-
14673105
-
Genome evolution reveals biochemical networks and functional modules. C von Mering EM Zdobnov S Tsoka FD Ciccarelli JB Pereira-Leal CA Ouzounis P Bork, Proceedings of the National Academy of Sciences of the United States of America 2003 100 26 15428 15433 14673105
-
(2003)
Proceedings of the National Academy of Sciences of the United States of America
, vol.100
, Issue.26
, pp. 15428-15433
-
-
Von Mering, C.1
Zdobnov, E.M.2
Tsoka, S.3
Ciccarelli, F.D.4
Pereira-Leal, J.B.5
Ouzounis, C.A.6
Bork, P.7
-
67
-
-
14644396645
-
Functional cartography of complex metabolic networks
-
DOI 10.1038/nature03288
-
Functional cartography of complex metabolic networks. R Guimera LAN Amaral, Nature 2005 433 7028 895 900 15729348 (Pubitemid 40314902)
-
(2005)
Nature
, vol.433
, Issue.7028
, pp. 895-900
-
-
Guimera, R.1
Amaral, L.A.N.2
-
70
-
-
33745942567
-
Extraction of phylogenetic network modules from the metabolic network
-
16533389
-
Extraction of phylogenetic network modules from the metabolic network. T Yamada M Kanehisa S Goto, Bmc Bioinformatics 2006 7 130 16533389
-
(2006)
Bmc Bioinformatics
, vol.7
, pp. 130
-
-
Yamada, T.1
Kanehisa, M.2
Goto, S.3
-
71
-
-
35548939345
-
Modular co-evolution of metabolic networks
-
17723146
-
Modular co-evolution of metabolic networks. J Zhao GH Ding L Tao H Yu ZH Yu JH Luo ZW Cao YX Li, Bmc Bioinformatics 2007 8 311 17723146
-
(2007)
Bmc Bioinformatics
, vol.8
, pp. 311
-
-
Zhao, J.1
Ding, G.H.2
Tao, L.3
Yu, H.4
Yu, Z.H.5
Luo, J.H.6
Cao, Z.W.7
Li, Y.X.8
-
72
-
-
34247563370
-
A network perspective on the topological importance of enzymes and their phylogenetic conservation
-
17425808
-
A network perspective on the topological importance of enzymes and their phylogenetic conservation. WC Liu WH Lin AJ Davis F Jordan HT Yang MJ Hwang, Bmc Bioinformatics 2007 8 121 17425808
-
(2007)
Bmc Bioinformatics
, vol.8
, pp. 121
-
-
Liu, W.C.1
Lin, W.H.2
Davis, A.J.3
Jordan, F.4
Yang, H.T.5
Hwang, M.J.6
-
74
-
-
12444297480
-
The genome sequence of an anaerobic aromatic-degrading denitrifying bacterium, strain EbN1
-
DOI 10.1007/s00203-004-0742-9
-
The genome sequence of an anaerobic aromatic-degrading denitrifying bacterium, strain EbN1. R Rabus M Kube J Heider A Beck K Heitmann F Widdel R Reinhardt, Archives of Microbiology 2005 183 1 27 36 15551059 (Pubitemid 40142879)
-
(2005)
Archives of Microbiology
, vol.183
, Issue.1
, pp. 27-36
-
-
Rabus, R.1
Kube, M.2
Heider, J.3
Beck, A.4
Heitmann, K.5
Widdel, F.6
Reinhardt, R.7
-
75
-
-
0034682335
-
Lateral gene transfer and the nature of bacterial innovation
-
10830951
-
Lateral gene transfer and the nature of bacterial innovation. H Ochman J Lawrence E Groisman, Nature 2000 405 299 304 10830951
-
(2000)
Nature
, vol.405
, pp. 299-304
-
-
Ochman, H.1
Lawrence, J.2
Groisman, E.3
-
76
-
-
0037402596
-
Prokaryote and eukaryote evolvability
-
12689728
-
Prokaryote and eukaryote evolvability. AM Poole MJ Phillips D Penny, Biosystems 2003 69 2-3 163 185 12689728
-
(2003)
Biosystems
, vol.69
, Issue.2-3
, pp. 163-185
-
-
Poole, A.M.1
Phillips, M.J.2
Penny, D.3
-
77
-
-
0035546223
-
Detection of lateral gene transfer among microbial genomes
-
Detection of lateral gene transfer among microbial genomes. MA Ragan, Current Opinion in Genetics & Development 2001 11 6 620 626
-
(2001)
Current Opinion in Genetics & Development
, vol.11
, Issue.6
, pp. 620-626
-
-
Ragan, M.A.1
-
79
-
-
21844434913
-
Evolutionary origins of genomic repertoires in bacteria
-
15799709
-
Evolutionary origins of genomic repertoires in bacteria. E Lerat V Daubin H Ochman NA Moran, Plos Biology 2005 3 5 130 15799709
-
(2005)
Plos Biology
, vol.3
, Issue.5
, pp. 5130
-
-
Lerat, E.1
Daubin, V.2
Ochman, H.3
Moran, N.A.4
-
80
-
-
0033609333
-
Evidence for lateral gene transfer between Archaea and Bacteria from genome sequence of Thermotoga maritima
-
10360571
-
Evidence for lateral gene transfer between Archaea and Bacteria from genome sequence of Thermotoga maritima. KE Nelson RA Clayton SR Gill ML Gwinn RJ Dodson DH Haft EK Hickey LD Peterson WC Nelson KA Ketchum, et al. Nature 1999 399 6734 323 329 10360571
-
(1999)
Nature
, vol.399
, Issue.6734
, pp. 323-329
-
-
Nelson, K.E.1
Clayton, R.A.2
Gill, S.R.3
Gwinn, M.L.4
Dodson, R.J.5
Haft, D.H.6
Hickey, E.K.7
Peterson, L.D.8
Nelson, W.C.9
Ketchum, K.A.10
-
81
-
-
0033603539
-
Phylogenetic classification and the universal tree
-
10381871
-
Phylogenetic classification and the universal tree. WF Doolittle, Science 1999 284 5423 2124 2128 10381871
-
(1999)
Science
, vol.284
, Issue.5423
, pp. 2124-2128
-
-
Doolittle, W.F.1
-
82
-
-
17144459133
-
Evidence against the selfish operon theory
-
15145575
-
Evidence against the selfish operon theory. C Pal LD Hurst, Trends in Genetics 2004 20 6 232 234 15145575
-
(2004)
Trends in Genetics
, vol.20
, Issue.6
, pp. 232-234
-
-
Pal, C.1
Hurst, L.D.2
-
83
-
-
0034671796
-
Evolutionary dynamics of full genome content in Escherichia coli
-
11118198
-
Evolutionary dynamics of full genome content in Escherichia coli. H Ochman IB Jones, Embo Journal 2000 19 24 6637 6643 11118198
-
(2000)
Embo Journal
, vol.19
, Issue.24
, pp. 6637-6643
-
-
Ochman, H.1
Jones, I.B.2
-
84
-
-
0032793852
-
Selfish operons: The evolutionary impact of gene clustering in prokaryotes and eukaryotes
-
Selfish operons: the evolutionary impact of gene clustering in prokaryotes and eukaryotes. J Lawrence, Current Opinion in Genetics & Development 1999 9 6 642 648
-
(1999)
Current Opinion in Genetics & Development
, vol.9
, Issue.6
, pp. 642-648
-
-
Lawrence, J.1
-
85
-
-
0029847554
-
Selfish operons: Horizontal transfer may drive the evolution of gene clusters
-
8844169
-
Selfish operons: Horizontal transfer may drive the evolution of gene clusters. JG Lawrence JR Roth, Genetics 1996 143 4 1843 1860 8844169
-
(1996)
Genetics
, vol.143
, Issue.4
, pp. 1843-1860
-
-
Lawrence, J.G.1
Roth, J.R.2
-
87
-
-
22444441190
-
Operon formation is driven by co-regulation and not by horizontal gene transfer
-
15930492
-
Operon formation is driven by co-regulation and not by horizontal gene transfer. MN Price KH Huang AP Arkin EJ Alm, Genome Research 2005 15 6 809 819 15930492
-
(2005)
Genome Research
, vol.15
, Issue.6
, pp. 809-819
-
-
Price, M.N.1
Huang, K.H.2
Arkin, A.P.3
Alm, E.J.4
-
89
-
-
0034306448
-
Gene context conservation of a higher order than operons
-
11050428
-
Gene context conservation of a higher order than operons. WC Lathe B Snel P Bork, Trends in Biochemical Sciences 2000 25 10 474 479 11050428
-
(2000)
Trends in Biochemical Sciences
, vol.25
, Issue.10
, pp. 474-479
-
-
Lathe, W.C.1
Snel, B.2
Bork, P.3
-
90
-
-
0033832615
-
Predicting protein function by genomic context: Quantitative evaluation and qualitative inferences
-
10958638
-
Predicting protein function by genomic context: Quantitative evaluation and qualitative inferences. M Huynen B Snel W Lathe P Bork, Genome Research 2000 10 8 1204 1210 10958638
-
(2000)
Genome Research
, vol.10
, Issue.8
, pp. 1204-1210
-
-
Huynen, M.1
Snel, B.2
Lathe, W.3
Bork, P.4
-
91
-
-
0037350415
-
The phylogenetic extent of metabolic enzymes and pathways
-
12618373
-
The phylogenetic extent of metabolic enzymes and pathways. JM Peregrin-Alvarez S Tsoka CA Ouzounis, Genome Research 2003 13 3 422 427 12618373
-
(2003)
Genome Research
, vol.13
, Issue.3
, pp. 422-427
-
-
Peregrin-Alvarez, J.M.1
Tsoka, S.2
Ouzounis, C.A.3
-
93
-
-
0034828777
-
Functional versatility and molecular diversity of the metabolic map of Escherichia coli
-
11544193
-
Functional versatility and molecular diversity of the metabolic map of Escherichia coli. S Tsoka CA Ouzounis, Genome Research 2001 11 9 1503 1510 11544193
-
(2001)
Genome Research
, vol.11
, Issue.9
, pp. 1503-1510
-
-
Tsoka, S.1
Ouzounis, C.A.2
-
94
-
-
0035816218
-
Domain combinations in archaeal, eubacterial and eukaryotic proteomes
-
11428892
-
Domain combinations in archaeal, eubacterial and eukaryotic proteomes. G Apic J Gough SA Teichmann, Journal of Molecular Biology 2001 310 2 311 325 11428892
-
(2001)
Journal of Molecular Biology
, vol.310
, Issue.2
, pp. 311-325
-
-
Apic, G.1
Gough, J.2
Teichmann, S.A.3
-
95
-
-
0003991673
-
-
Sunderland, Massachusetts: Sinauer Associates
-
Inferring Phylogenies. J Felsenstein, Sunderland, Massachusetts: Sinauer Associates 2004
-
(2004)
Inferring Phylogenies
-
-
Felsenstein, J.1
-
96
-
-
0022203256
-
Phylogenies and the comparative method
-
Phylogenies and the comparative method. J Felsenstein, American Naturalist 1985 125 1 1 15
-
(1985)
American Naturalist
, vol.125
, Issue.1
, pp. 1-15
-
-
Felsenstein, J.1
-
97
-
-
33747827586
-
NAST: A multiple sequence alignment server for comparative analysis of 16S rRNA genes
-
16845035
-
NAST: a multiple sequence alignment server for comparative analysis of 16S rRNA genes. TZ DeSantis P Hugenholtz K Keller EL Brodie N Larsen YM Piceno R Phan GL Andersen, Nucleic Acids Research 2006 34 394 W399 16845035
-
(2006)
Nucleic Acids Research
, vol.34
-
-
Desantis, T.Z.1
Hugenholtz, P.2
Keller, K.3
Brodie, E.L.4
Larsen, N.5
Piceno, Y.M.6
Phan, R.7
Andersen, G.L.8
-
98
-
-
0242578620
-
A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood
-
14530136
-
A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. S Guindon O Gascuel, Systematic Biology 2003 52 696 704 14530136
-
(2003)
Systematic Biology
, vol.52
, pp. 696-704
-
-
Guindon, S.1
Gascuel, O.2
-
99
-
-
0022376704
-
Dating of the human ape splitting by a molecular clock of mitochondria
-
3934395
-
Dating of the human ape splitting by a molecular clock of mitochondria. M Hasegawa H Kishino TA Yano, Journal of Molecular Evolution 1985 22 2 160 174 3934395
-
(1985)
Journal of Molecular Evolution
, vol.22
, Issue.2
, pp. 160-174
-
-
Hasegawa, M.1
Kishino, H.2
Yano, T.A.3
-
101
-
-
33845873289
-
Interactive Tree of Life (iTOL): An online tool for phylogenetic tree display and annotation
-
17050570
-
Interactive Tree Of Life (iTOL): an online tool for phylogenetic tree display and annotation. I Letunic P Bork, Bioinformatics 2007 23 1 127 128 17050570
-
(2007)
Bioinformatics
, vol.23
, Issue.1
, pp. 127-128
-
-
Letunic, I.1
Bork, P.2
-
102
-
-
0037012880
-
Specificity and stability in topology of protein networks
-
11988575
-
Specificity and stability in topology of protein networks. S Maslov K Sneppen, Science 2002 296 910 913 11988575
-
(2002)
Science
, vol.296
, pp. 910-913
-
-
Maslov, S.1
Sneppen, K.2
|