-
3
-
-
0742305866
-
Network biology: Understanding the cell's functional organization
-
10.1038/nrg1272 14735121
-
Barabási AL Oltvai ZN Network biology: Understanding the cell's functional organization Nat Rev Genet 2004 5 101-113 10.1038/nrg1272 14735121
-
(2004)
Nat Rev Genet
, vol.5
, pp. 101-113
-
-
Barabási, A.L.1
Oltvai, Z.N.2
-
4
-
-
27944493925
-
Scale-free networks in cell biology
-
10.1242/jcs.02714 16254242
-
Albert R Scale-free networks in cell biology J Cell Sci 2005 118 4947-4957 10.1242/jcs.02714 16254242
-
(2005)
J Cell Sci
, vol.118
, pp. 4947-4957
-
-
Albert, R.1
-
5
-
-
0034609791
-
The large-scale organization of metabolic networks
-
10.1038/35036627 11034217
-
Jeong H Tombor B Albert R Oltvai ZN Barabási AL The large-scale organization of metabolic networks Nature 2000 407 651-654 10.1038/ 35036627 11034217
-
(2000)
Nature
, vol.407
, pp. 651-654
-
-
Jeong, H.1
Tombor, B.2
Albert, R.3
Oltvai, Z.N.4
Barabási, A.L.5
-
6
-
-
0035799707
-
Lethality and centrality in protein networks
-
10.1038/35075138 11333967
-
Jeong H Mason SP Barabási AL Oltvai ZN Lethality and centrality in protein networks Nature 2001 411 41-42 10.1038/35075138 11333967
-
(2001)
Nature
, vol.411
, pp. 41-42
-
-
Jeong, H.1
Mason, S.P.2
Barabási, A.L.3
Oltvai, Z.N.4
-
7
-
-
10744230485
-
Global mapping of the yeast genetic interaction network
-
10.1126/science.1091317 14764870
-
Tong AHY Lesage G Bader GD Ding HM Xu H Xin XF Young J Berriz GF Brost RL Chang M Chen YQ Cheng X Chua G Friesen H Goldberg DS Haynes J Humphries C He G Hussein S Ke LZ Krogan N Li ZJ Levinson JN Lu H Menard P Munyana C Parsons AB Ryan O Tonikian R Roberts T Sdicu AM Shapiro J Sheikh B Suter B Wong SL Zhang LV Zhu HW Burd CG Munro S Sander C Rine J Greenblatt J Peter M Bretscher A Bell G Roth FP Brown GW Andrews B Bussey H Boone C Global mapping of the yeast genetic interaction network Science 2004 303 808-813 10.1126/science.1091317 14764870
-
(2004)
Science
, vol.303
, pp. 808-813
-
-
Tong, A.H.Y.1
Lesage, G.2
Bader, G.D.3
Ding, H.M.4
Xu, H.5
Xin, X.F.6
Young, J.7
Berriz, G.F.8
Brost, R.L.9
Chang, M.10
Chen, Y.Q.11
Cheng, X.12
Chua, G.13
Friesen, H.14
Goldberg, D.S.15
Haynes, J.16
Humphries, C.17
He, G.18
Hussein, S.19
Ke, L.Z.20
Krogan, N.21
Li, Z.J.22
Levinson, J.N.23
Lu, H.24
Menard, P.25
Munyana, C.26
Parsons, A.B.27
Ryan, O.28
Tonikian, R.29
Roberts, T.30
Sdicu, A.M.31
Shapiro, J.32
Sheikh, B.33
Suter, B.34
Wong, S.L.35
Zhang, L.V.36
Zhu, H.W.37
Burd, C.G.38
Munro, S.39
Sander, C.40
Rine, J.41
Greenblatt, J.42
Peter, M.43
Bretscher, A.44
Bell, G.45
Roth, F.P.46
Brown, G.W.47
Andrews, B.48
Bussey, H.49
Boone, C.50
more..
-
8
-
-
0038483826
-
Emergence of scaling in random networks
-
10.1126/science.286.5439.509 10521342
-
Barabási AL Albert R Emergence of scaling in random networks Science 1999 286 509-512 10.1126/science.286.5439.509 10521342
-
(1999)
Science
, vol.286
, pp. 509-512
-
-
Barabási, A.L.1
Albert, R.2
-
9
-
-
14544268137
-
Uncovering transcriptional regulation of metabolism by using metabolic network topology
-
549453 15710883 10.1073/pnas.0406811102
-
Patil KR Nielsen J Uncovering transcriptional regulation of metabolism by using metabolic network topology Proc Natl Acad Sci USA 2005 102 2685-2689 549453 15710883 10.1073/pnas.0406811102
-
(2005)
Proc Natl Acad Sci USA
, vol.102
, pp. 2685-2689
-
-
Patil, K.R.1
Nielsen, J.2
-
10
-
-
29144446142
-
Supervised enzyme network inference from the integration of genomic data and chemical information
-
10.1093/bioinformatics/bti1012 15961492
-
Yamanishi Y Vert JP Kanehisa M Supervised enzyme network inference from the integration of genomic data and chemical information Bioinformatics 2005 21 Suppl 1 i468-i477 10.1093/bioinformatics/bti1012 15961492
-
(2005)
Bioinformatics
, vol.21
, Issue.SUPPL. 1
-
-
Yamanishi, Y.1
Vert, J.P.2
Kanehisa, M.3
-
11
-
-
0035823264
-
The small world inside large metabolic networks
-
10.1098/rspb.2001.1711
-
Wagner A Fell DA The small world inside large metabolic networks Proc R Soc Lond B 2001 268 1803-1810 10.1098/rspb.2001.1711
-
(2001)
Proc R Soc Lond B
, vol.268
, pp. 1803-1810
-
-
Wagner, A.1
Fell, D.A.2
-
12
-
-
13244265564
-
Structural comparison of metabolic networks in selected single cell organisms
-
549204 15649332 10.1186/1471-2105-6-8
-
Zhu D Qin ZS Structural comparison of metabolic networks in selected single cell organisms BMC Bioinformatics 2005 6 8 549204 15649332 10.1186/1471-2105-6-8
-
(2005)
BMC Bioinformatics
, vol.6
, pp. 8
-
-
Zhu, D.1
Qin, Z.S.2
-
13
-
-
32144438837
-
Metabolic pathways variability and sequence/networks comparisons
-
1360688 16420696 10.1186/1471-2105-7-24
-
Tun K Dhar PK Palumbo MC Giuliani A Metabolic pathways variability and sequence/networks comparisons BMC Bioinformatics 2006 7 24 1360688 16420696 10.1186/1471-2105-7-24
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 24
-
-
Tun, K.1
Dhar, P.K.2
Palumbo, M.C.3
Giuliani, A.4
-
14
-
-
2942604422
-
Network analysis of metabolic enzyme evolution in Escherichia coli
-
394313 15113413 10.1186/1471-2105-5-15
-
Light S Kraulis P Network analysis of metabolic enzyme evolution in Escherichia coli BMC Bioinformatics 2004 5 15 394313 15113413 10.1186/ 1471-2105-5-15
-
(2004)
BMC Bioinformatics
, vol.5
, pp. 15
-
-
Light, S.1
Kraulis, P.2
-
15
-
-
27944470116
-
Preferential attachment in the evolution of metabolic networks
-
1316878 16281983 10.1186/1471-2164-6-159
-
Light S Kraulis P Elofsson A Preferential attachment in the evolution of metabolic networks BMC Genomics 2005 6 159 1316878 16281983 10.1186/ 1471-2164-6-159
-
(2005)
BMC Genomics
, vol.6
, pp. 159
-
-
Light, S.1
Kraulis, P.2
Elofsson, A.3
-
17
-
-
0033551248
-
Assigning protein functions by comparative genome analysis: Protein phylogenetic profiles
-
16324 10200254 10.1073/pnas.96.8.4285
-
Pellegrini M Marcotte EM Thompson MJ Eisenberg D Yeates TO Assigning protein functions by comparative genome analysis: Protein phylogenetic profiles Proc Natl Acad Sci USA 1999 96 4285-4288 16324 10200254 10.1073/ pnas.96.8.4285
-
(1999)
Proc Natl Acad Sci USA
, vol.96
, pp. 4285-4288
-
-
Pellegrini, M.1
Marcotte, E.M.2
Thompson, M.J.3
Eisenberg, D.4
Yeates, T.O.5
-
18
-
-
27244436714
-
Expansion of the BioCyc collection of pathway/genome databases to 160 genomes
-
10.1093/nar/gki892
-
Karp PD Ouzounis CA Moore-Kochlacs C Goldovsky L Kaipa P Ahrén D Tsoka S Darzentas N Kunin V López-Bigas N Expansion of the BioCyc collection of pathway/genome databases to 160 genomes Nucleic Acids Res 2002 33 6083-6089 10.1093/nar/gki892
-
(2002)
Nucleic Acids Res
, vol.33
, pp. 6083-6089
-
-
Karp, P.D.1
Ouzounis, C.A.2
Moore-Kochlacs, C.3
Goldovsky, L.4
Kaipa, P.5
Ahrén, D.6
Tsoka, S.7
Darzentas, N.8
Kunin, V.9
López-Bigas, N.10
-
20
-
-
33645128369
-
Topological keystone species: Measures of positional importance in food webs
-
10.1111/j.0030-1299.2006.13724.x
-
Jordán F Liu WC Davis AJ Topological keystone species: Measures of positional importance in food webs Oikos 2006 112 535-546 10.1111/ j.0030-1299.2006.13724.x
-
(2006)
Oikos
, vol.112
, pp. 535-546
-
-
Jordán, F.1
Liu, W.C.2
Davis, A.J.3
-
21
-
-
0037345719
-
Subnetwork hierarchies of biochemical pathways
-
10.1093/bioinformatics/btg033 12611809
-
Holme P Huss M Jeong H Subnetwork hierarchies of biochemical pathways Bioinformatics 2003 19 532-538 10.1093/bioinformatics/btg033 12611809
-
(2003)
Bioinformatics
, vol.19
, pp. 532-538
-
-
Holme, P.1
Huss, M.2
Jeong, H.3
-
22
-
-
0042093610
-
The connectivity structure, giant strong component and centrality of metabolic networks
-
10.1093/bioinformatics/btg177 12874056
-
Ma HW Zeng AP The connectivity structure, giant strong component and centrality of metabolic networks Bioinformatics 2003 19 1423-1430 10.1093/bioinformatics/btg177 12874056
-
(2003)
Bioinformatics
, vol.19
, pp. 1423-1430
-
-
Ma, H.W.1
Zeng, A.P.2
-
23
-
-
0032482432
-
Collective dynamics of small world network
-
10.1038/30918 9623998
-
Watts DJ Strogatz SH Collective dynamics of small world network Nature 1998 393 440-442 10.1038/30918 9623998
-
(1998)
Nature
, vol.393
, pp. 440-442
-
-
Watts, D.J.1
Strogatz, S.H.2
-
24
-
-
0001260894
-
On the evolution of biochemical syntheses
-
1078786 16578152 10.1073/pnas.31.6.153
-
Horowitz NH On the evolution of biochemical syntheses Proc Natl Acad Sci USA 1945 31 153-157 1078786 16578152 10.1073/pnas.31.6.153
-
(1945)
Proc Natl Acad Sci USA
, vol.31
, pp. 153-157
-
-
Horowitz, N.H.1
-
25
-
-
0017272554
-
Enzyme recruitment in evolution of new function
-
10.1146/annurev.mi.30.100176.002205 791073
-
Jensen RA Enzyme recruitment in evolution of new function Annu Rev Microbiol 1976 30 409-425 10.1146/annurev.mi.30.100176.002205 791073
-
(1976)
Annu Rev Microbiol
, vol.30
, pp. 409-425
-
-
Jensen, R.A.1
-
26
-
-
0032482924
-
Molecular archaeology of the Escherichia coli genome
-
21352 9689094 10.1073/pnas.95.16.9413
-
Lawrence JG Ochman H Molecular archaeology of the Escherichia coli genome Proc Natl Acad Sci USA 1998 95 9413-9417 21352 9689094 10.1073/ pnas.95.16.9413
-
(1998)
Proc Natl Acad Sci USA
, vol.95
, pp. 9413-9417
-
-
Lawrence, J.G.1
Ochman, H.2
-
27
-
-
0036916269
-
Extreme pathway lengths and reaction participation in genome-scale metabolic networks
-
187577 12466293 10.1101/gr.327702
-
Papin JA Price ND Palsson BO Extreme pathway lengths and reaction participation in genome-scale metabolic networks Genome Res 2002 12 1889-1900 187577 12466293 10.1101/gr.327702
-
(2002)
Genome Res
, vol.12
, pp. 1889-1900
-
-
Papin, J.A.1
Price, N.D.2
Palsson, B.O.3
-
28
-
-
9544253891
-
Genome-scale models of microbial cells: Evaluating the consequences of constraints
-
10.1038/nrmicro1023
-
Price ND Reed JL Palsson BO Genome-scale models of microbial cells: evaluating the consequences of constraints Nature Rev Microbiol 2004 2 886-897 10.1038/nrmicro1023
-
(2004)
Nature Rev Microbiol
, vol.2
, pp. 886-897
-
-
Price, N.D.1
Reed, J.L.2
Palsson, B.O.3
-
29
-
-
0037079050
-
Metabolic network structure determines key aspects of functionality and regulation
-
10.1038/nature01166 12432396
-
Stelling J Klamt S Battenbrock K Schuster S Gilles ED Metabolic network structure determines key aspects of functionality and regulation Nature 2002 420 190-193 10.1038/nature01166 12432396
-
(2002)
Nature
, vol.420
, pp. 190-193
-
-
Stelling, J.1
Klamt, S.2
Battenbrock, K.3
Schuster, S.4
Gilles, E.D.5
-
30
-
-
0036001069
-
Metabolic modeling of microbes: The flux-balance approach
-
10.1046/j.1462-2920.2002.00282.x 12000313
-
Edwards JS Covert M Palsson B Metabolic modeling of microbes: The flux-balance approach Environ Microbiol 2002 4 133-140 10.1046/ j.1462-2920.2002.00282.x 12000313
-
(2002)
Environ Microbiol
, vol.4
, pp. 133-140
-
-
Edwards, J.S.1
Covert, M.2
Palsson, B.3
-
31
-
-
0037079023
-
Escherichia coli k-12 undergoes adaptive evolution to achieve in silico predicted optimal growth
-
10.1038/nature01149 12432395
-
Ibarra R Edwards JS Palsson B Escherichia coli k-12 undergoes adaptive evolution to achieve in silico predicted optimal growth Nature 2002 420 186-189 10.1038/nature01149 12432395
-
(2002)
Nature
, vol.420
, pp. 186-189
-
-
Ibarra, R.1
Edwards, J.S.2
Palsson, B.3
|