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Volumn 9, Issue 6, 1999, Pages 642-648

Selfish operons: The evolutionary impact of gene clustering in prokaryotes and eukaryotes

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL GENE; CAENORHABDITIS ELEGANS; EUKARYOTE; EVOLUTION; GENE CLUSTER; OPERON; PRIORITY JOURNAL; PROKARYOTE; REVIEW;

EID: 0032793852     PISSN: 0959437X     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0959-437X(99)00025-8     Document Type: Review
Times cited : (186)

References (49)
  • 1
    • 0344304197 scopus 로고
    • Semi-allelic genes
    • Komai T. Semi-allelic genes. Amer Natur. 84:1950;381-392.
    • (1950) Amer Natur , vol.84 , pp. 381-392
    • Komai, T.1
  • 2
    • 0008887311 scopus 로고
    • Pseudoallelism in Drosophila melanogaster
    • Lewis E.B. Pseudoallelism in Drosophila melanogaster. Genetics. 33:1947;113.
    • (1947) Genetics , vol.33 , pp. 113
    • Lewis, E.B.1
  • 3
    • 0001297991 scopus 로고
    • An eight-chromosome map of Aspergillus nidulans
    • Käfer E. An eight-chromosome map of Aspergillus nidulans. Adv Genet. 9:1958;105-145.
    • (1958) Adv Genet , vol.9 , pp. 105-145
    • Käfer, E.1
  • 5
    • 0000011762 scopus 로고
    • Complex loci in microorganisms
    • Demerec M., Hartman P. Complex loci in microorganisms. Annu Rev Microbiol. 13:1959;377-406.
    • (1959) Annu Rev Microbiol , vol.13 , pp. 377-406
    • Demerec, M.1    Hartman, P.2
  • 6
    • 0345166638 scopus 로고
    • The linkage map of Salmonella typhimurium
    • Sanderson K.E., Demerec M. The linkage map of Salmonella typhimurium. Genetics. 51:1965;897-913.
    • (1965) Genetics , vol.51 , pp. 897-913
    • Sanderson, K.E.1    Demerec, M.2
  • 7
    • 0029847554 scopus 로고    scopus 로고
    • Selfish operons: Horizontal transfer may drive the evolution of gene clusters
    • Lawrence J.G., Roth J.R. Selfish operons: horizontal transfer may drive the evolution of gene clusters. Genetics. 143:1996;1843-1860.
    • (1996) Genetics , vol.143 , pp. 1843-1860
    • Lawrence, J.G.1    Roth, J.R.2
  • 8
    • 0027220647 scopus 로고
    • Identification and classification of protein fold families
    • Orengo C.A., Flores T.P., Taylor W.R., Thorton J.M. Identification and classification of protein fold families. Protein Eng. 6:1993;485-500.
    • (1993) Protein Eng , vol.6 , pp. 485-500
    • Orengo, C.A.1    Flores, T.P.2    Taylor, W.R.3    Thorton, J.M.4
  • 10
    • 0013889334 scopus 로고
    • The evolution of gene clusters and genetic circularity in microorganisms
    • Stahl F.W., Murray N.E. The evolution of gene clusters and genetic circularity in microorganisms. Genetics. 53:1966;569-576.
    • (1966) Genetics , vol.53 , pp. 569-576
    • Stahl, F.W.1    Murray, N.E.2
  • 11
    • 0032808632 scopus 로고    scopus 로고
    • Changing views on the nature of the bacterial cell: From biochemistry to cytology
    • Losick R., Shapiro L. Changing views on the nature of the bacterial cell: from biochemistry to cytology. J Bacteriol. 181:1999;4143-4145.
    • (1999) J Bacteriol , vol.181 , pp. 4143-4145
    • Losick, R.1    Shapiro, L.2
  • 12
    • 0033058895 scopus 로고    scopus 로고
    • Evolutionary instability of operon structures disclosed by sequence comparisons of complete microbial genomes
    • A survey of 11 complete microbial genomes reveals that the operon structure is labile and genes may be clustered and dispersed numerous times over the evolutionary history of bacterial lineages. Operons that have been conserved encode proteins that interact physically.
    • Itoh T., Takemoto K., Mori H., Gojobori T. Evolutionary instability of operon structures disclosed by sequence comparisons of complete microbial genomes. Mol Biol Evol. 16:1999;332-346. A survey of 11 complete microbial genomes reveals that the operon structure is labile and genes may be clustered and dispersed numerous times over the evolutionary history of bacterial lineages. Operons that have been conserved encode proteins that interact physically.
    • (1999) Mol Biol Evol , vol.16 , pp. 332-346
    • Itoh, T.1    Takemoto, K.2    Mori, H.3    Gojobori, T.4
  • 13
    • 72949131359 scopus 로고
    • L'opéron: Groupe de gènes à expression coordonée par un opérateur
    • Jacob F., Perrin D., Sanchez C., Monod J. L'opéron: groupe de gènes à expression coordonée par un opérateur. C R Acad Sci III. 250:1960;1727-1729.
    • (1960) C R Acad Sci III , vol.250 , pp. 1727-1729
    • Jacob, F.1    Perrin, D.2    Sanchez, C.3    Monod, J.4
  • 14
    • 0027372158 scopus 로고
    • Plasmid addiction genes of bacteriophage P1: Doc, which causes cell death on curing of prophage, and phd, which prevents host death when prophage is retained
    • Lehnherr H., Maguin E., Jafri S., Yarmolinsky M.B. Plasmid addiction genes of bacteriophage P1: doc, which causes cell death on curing of prophage, and phd, which prevents host death when prophage is retained. J Mol Biol. 233:1993;414-428.
    • (1993) J Mol Biol , vol.233 , pp. 414-428
    • Lehnherr, H.1    Maguin, E.2    Jafri, S.3    Yarmolinsky, M.B.4
  • 15
    • 0030709394 scopus 로고    scopus 로고
    • The poison-antidote stability system of the broad-host-range Thiobacillus ferrooxidans plasmid pTF-FC2
    • Smith A.S.G., Rawlings D.E. The poison-antidote stability system of the broad-host-range Thiobacillus ferrooxidans plasmid pTF-FC2. Mol Microbiol. 26:1997;961-970.
    • (1997) Mol Microbiol , vol.26 , pp. 961-970
    • Smith, A.S.G.1    Rawlings, D.E.2
  • 16
    • 0030008368 scopus 로고    scopus 로고
    • An Escherichia coli chromosomal 'addiction module' regulated by guanosine 3′,5′-bispyrophosphate: A model for programmed bacterial cell death
    • Aizenman E., Engelberg-Kulka H., Glaser G. An Escherichia coli chromosomal 'addiction module' regulated by guanosine 3′,5′-bispyrophosphate: a model for programmed bacterial cell death. Proc Natl Acad Sci USA. 93:1996;6059-6063.
    • (1996) Proc Natl Acad Sci USA , vol.93 , pp. 6059-6063
    • Aizenman, E.1    Engelberg-Kulka, H.2    Glaser, G.3
  • 17
    • 0032563108 scopus 로고    scopus 로고
    • The entericidin locus of Escherichia coli and its implications for programmed bacterial cell death
    • Bishop R.E., Leskiw B.K., Hodges R.S., Kay C.M., Weiner J.H. The entericidin locus of Escherichia coli and its implications for programmed bacterial cell death. J Mol Biol. 280:1998;583-596.
    • (1998) J Mol Biol , vol.280 , pp. 583-596
    • Bishop, R.E.1    Leskiw, B.K.2    Hodges, R.S.3    Kay, C.M.4    Weiner, J.H.5
  • 18
    • 0028901038 scopus 로고
    • Selfish behavior of restriction-modification systems
    • Naito T., Kusano K., Kobayashi I. Selfish behavior of restriction-modification systems. Science. 267:1995;897-899.
    • (1995) Science , vol.267 , pp. 897-899
    • Naito, T.1    Kusano, K.2    Kobayashi, I.3
  • 19
    • 0031823984 scopus 로고    scopus 로고
    • Selfishness and death: Raison d'etre of restriction, recombination and mitochondria
    • Kobayashi I. Selfishness and death: raison d'etre of restriction, recombination and mitochondria. Trends Genet. 14:1998;368-374.
    • (1998) Trends Genet , vol.14 , pp. 368-374
    • Kobayashi, I.1
  • 20
    • 0031981856 scopus 로고    scopus 로고
    • Selfish restriction modification genes: Resistance of a resident R/M plasmid to displacement by an incompatible plasmid mediated by host killing
    • Naito Y., Naito T., Kobayashi I. Selfish restriction modification genes: resistance of a resident R/M plasmid to displacement by an incompatible plasmid mediated by host killing. Biol Chem. 379:1998;429-436.
    • (1998) Biol Chem , vol.379 , pp. 429-436
    • Naito, Y.1    Naito, T.2    Kobayashi, I.3
  • 21
    • 0032568598 scopus 로고    scopus 로고
    • Restriction-modification gene complexes as selfish gene entities: Roles of a regulatory system in their establishment, maintenance, and apoptotic mutual exclusion
    • A demonstration of plasmid exclusion is used to buttress and argument that restriction/modification genes represent selfish addiction modules.
    • Nakayama Y., Kobayashi I. Restriction-modification gene complexes as selfish gene entities: roles of a regulatory system in their establishment, maintenance, and apoptotic mutual exclusion. Proc Natl Acad Sci USA. 95:1998;6442-6447. A demonstration of plasmid exclusion is used to buttress and argument that restriction/modification genes represent selfish addiction modules.
    • (1998) Proc Natl Acad Sci USA , vol.95 , pp. 6442-6447
    • Nakayama, Y.1    Kobayashi, I.2
  • 22
    • 0031474036 scopus 로고    scopus 로고
    • The restriction-modification genes of Escherichia coli K-12 may not be selfish: They do not resist loss and are readily replaced by alleles conferring different specificities
    • O'Neill M., Chen A., Murray N.E. The restriction-modification genes of Escherichia coli K-12 may not be selfish: they do not resist loss and are readily replaced by alleles conferring different specificities. Proc Natl Acad Sci USA. 94:1997;14596-14601.
    • (1997) Proc Natl Acad Sci USA , vol.94 , pp. 14596-14601
    • O'Neill, M.1    Chen, A.2    Murray, N.E.3
  • 24
    • 0345405268 scopus 로고    scopus 로고
    • Mobile gene cassettes and integrons: Moving antibiotic resistance genes in gram-negative bacteria
    • Hall R.M. Mobile gene cassettes and integrons: moving antibiotic resistance genes in gram-negative bacteria. Ciba Found Symp. 207:1997;68-80.
    • (1997) Ciba Found Symp , vol.207 , pp. 68-80
    • Hall, R.M.1
  • 25
    • 0032855518 scopus 로고    scopus 로고
    • Gene transfer, speciation, and the evolution of bacterial genomes
    • Lawrence J.G. Gene transfer, speciation, and the evolution of bacterial genomes. Curr Opin Microbiol. 2:1999;519-524.
    • (1999) Curr Opin Microbiol , vol.2 , pp. 519-524
    • Lawrence, J.G.1
  • 26
    • 0032499698 scopus 로고    scopus 로고
    • The universal ancestor
    • Woese here presents cogent arguments for the development of the universal common ancestor that implicate horizontal gene exchange as a critical process in the evolution of cells bearing complex metabolism.
    • Woese C. The universal ancestor. Proc Natl Acad Sci USA. 95:1998;6854-6859. Woese here presents cogent arguments for the development of the universal common ancestor that implicate horizontal gene exchange as a critical process in the evolution of cells bearing complex metabolism.
    • (1998) Proc Natl Acad Sci USA , vol.95 , pp. 6854-6859
    • Woese, C.1
  • 27
    • 0032482924 scopus 로고    scopus 로고
    • Molecular archaeology of the Escherichia coli genome
    • The rate of horizontal transfer is estimated in Escherichia coli using a genomic approach. Rate of change of nucleotide composition across codon positions is used to estimate the time of introduction of horizontally transferred genes.
    • Lawrence J.G., Ochman H. Molecular archaeology of the Escherichia coli genome. Proc Natl Acad Sci USA. 95:1998;9413-9417. The rate of horizontal transfer is estimated in Escherichia coli using a genomic approach. Rate of change of nucleotide composition across codon positions is used to estimate the time of introduction of horizontally transferred genes.
    • (1998) Proc Natl Acad Sci USA , vol.95 , pp. 9413-9417
    • Lawrence, J.G.1    Ochman, H.2
  • 28
    • 0030809629 scopus 로고    scopus 로고
    • Selfish operons and speciation by gene transfer
    • Lawrence J.G. Selfish operons and speciation by gene transfer. Trends Microbiol. 5:1997;355-359.
    • (1997) Trends Microbiol , vol.5 , pp. 355-359
    • Lawrence, J.G.1
  • 29
    • 0004226949 scopus 로고    scopus 로고
    • Roles of horizontal transfer in bacterial evolution
    • M. Syvanen, & C.I. Kado. London: Chapman and Hall
    • Lawrence J.G., Roth J.R. Roles of horizontal transfer in bacterial evolution. Syvanen M., Kado C.I. Horizontal Transfer. 1998;208-225 Chapman and Hall, London.
    • (1998) Horizontal Transfer , pp. 208-225
    • Lawrence, J.G.1    Roth, J.R.2
  • 30
    • 0032568582 scopus 로고    scopus 로고
    • Measuring genome evolution
    • The evolution of gene content and gene order in bacterial chromosomes is evaluated using urine complete genome sequences to determine rates of chromosome evolution.
    • Huynen M.A., Bork P. Measuring genome evolution. Proc Natl Acad Sci USA. 95:1998;442-444. The evolution of gene content and gene order in bacterial chromosomes is evaluated using urine complete genome sequences to determine rates of chromosome evolution.
    • (1998) Proc Natl Acad Sci USA , vol.95 , pp. 442-444
    • Huynen, M.A.1    Bork, P.2
  • 31
    • 0032900532 scopus 로고    scopus 로고
    • Genome phylogeny based on gene content
    • A microbial phylogeny is constructed on the basis of shared gene content, establishing that microbial history as documented by vertical inheritance has not been obscured by rampant horizontal transfer in all microbial lineages.
    • Snel B., Bork P., Huynen M. Genome phylogeny based on gene content. Nat Genet. 21:1999;108-110. A microbial phylogeny is constructed on the basis of shared gene content, establishing that microbial history as documented by vertical inheritance has not been obscured by rampant horizontal transfer in all microbial lineages.
    • (1999) Nat Genet , vol.21 , pp. 108-110
    • Snel, B.1    Bork, P.2    Huynen, M.3
  • 32
    • 0033603539 scopus 로고    scopus 로고
    • Phylogenetic classification and the universal tree
    • Doolittle assembles data from many recent analyses of rampant horizontal transfer in microbial lineages. A compelling case is presented for being cautious in the use of gene trees to estimate organismal phylogeny because long periods of lateral genetic transfer can obscure primordial relationships.
    • Doolittle W.F. Phylogenetic classification and the universal tree. Science. 284:1999;2124-2129. Doolittle assembles data from many recent analyses of rampant horizontal transfer in microbial lineages. A compelling case is presented for being cautious in the use of gene trees to estimate organismal phylogeny because long periods of lateral genetic transfer can obscure primordial relationships.
    • (1999) Science , vol.284 , pp. 2124-2129
    • Doolittle, W.F.1
  • 33
    • 0031992603 scopus 로고    scopus 로고
    • Evolution and horizontal transfer of an entire biosynthetic pathway for cytochrome c biogenesis: Helicobacter, Deinococcus, Archae and more
    • Kranz R.G., Goldman B.S. Evolution and horizontal transfer of an entire biosynthetic pathway for cytochrome c biogenesis: Helicobacter, Deinococcus, Archae and more. Mol Microbiol. 27:1998;871-874.
    • (1998) Mol Microbiol , vol.27 , pp. 871-874
    • Kranz, R.G.1    Goldman, B.S.2
  • 34
    • 0029895319 scopus 로고    scopus 로고
    • A shared strategy for virulence
    • Barinaga M. A shared strategy for virulence. Science. 272:1996;1261-1263.
    • (1996) Science , vol.272 , pp. 1261-1263
    • Barinaga, M.1
  • 35
    • 0030870440 scopus 로고    scopus 로고
    • How Salmonella became a pathogen
    • Groisman E.A., Ochman H. How Salmonella became a pathogen. Trends Microbiol. 5:1997;343-349.
    • (1997) Trends Microbiol , vol.5 , pp. 343-349
    • Groisman, E.A.1    Ochman, H.2
  • 36
    • 0030901705 scopus 로고    scopus 로고
    • Pathogenicity islands of virulent bacteria: Structure, function and impact on microbial evolution
    • Hacker J., Blum-Oehler G., Muhldorfer I., Tschape H. Pathogenicity islands of virulent bacteria: structure, function and impact on microbial evolution. Mol Microbiol. 23:1997;1089-1097.
    • (1997) Mol Microbiol , vol.23 , pp. 1089-1097
    • Hacker, J.1    Blum-Oehler, G.2    Muhldorfer, I.3    Tschape, H.4
  • 37
    • 0031919616 scopus 로고    scopus 로고
    • Escherichia coli genes expressed preferentially in an aquatic environment
    • Subtractive hybridization was used to identify E. coli genes expressed preferentially in aquatic environments; laboratory isolates have accumulated mutations in one gene identified in this screen, suggesting that its expression may be detrimental in this environment.
    • Espinosa-Urgel M., Kolter R. Escherichia coli genes expressed preferentially in an aquatic environment. Mol Microbiol. 28:1998;325-332. Subtractive hybridization was used to identify E. coli genes expressed preferentially in aquatic environments; laboratory isolates have accumulated mutations in one gene identified in this screen, suggesting that its expression may be detrimental in this environment.
    • (1998) Mol Microbiol , vol.28 , pp. 325-332
    • Espinosa-Urgel, M.1    Kolter, R.2
  • 38
    • 0027227620 scopus 로고
    • Evidence for a fourteen-gene, phnC to phnP locus for phosphonate metabolism in Escherichia coli
    • Metcalf W.W., Wanner B.L. Evidence for a fourteen-gene, phnC to phnP locus for phosphonate metabolism in Escherichia coli. Gene. 129:1993;27-32.
    • (1993) Gene , vol.129 , pp. 27-32
    • Metcalf, W.W.1    Wanner, B.L.2
  • 39
    • 0025883162 scopus 로고
    • Internal initiation of translation initiated by the 5′ leader of a cellular mRNA
    • Macejak D.G., Sarnow P. Internal initiation of translation initiated by the 5′ leader of a cellular mRNA. Nature. 353:1991;90-94.
    • (1991) Nature , vol.353 , pp. 90-94
    • Macejak, D.G.1    Sarnow, P.2
  • 40
    • 0025778531 scopus 로고
    • Expression of growth/differentiation factor 1 in the nervous system: Conservation of biscistronic structure
    • Lee S.J. Expression of growth/differentiation factor 1 in the nervous system: conservation of biscistronic structure. Proc Natl Acad Sci USA. 88:1991;4250-4254.
    • (1991) Proc Natl Acad Sci USA , vol.88 , pp. 4250-4254
    • Lee, S.J.1
  • 41
    • 0024546509 scopus 로고
    • The scanning model for translation: An update
    • Kozak M. The scanning model for translation: an update. J Cell Biol. 108:1987;229-241.
    • (1987) J Cell Biol , vol.108 , pp. 229-241
    • Kozak, M.1
  • 42
    • 0030883632 scopus 로고    scopus 로고
    • Sequencing of a 1,3-1,4-beta-D-glucanase (lichenase) from the anaerobic fungus Orpinomyces strain PC-2: Properties of the enzyme expressed in Escherichia coli and evidence that the gene has a bacterial origin
    • Chen H., Li X.L., Ljungdahl L.G. Sequencing of a 1,3-1,4-beta-D-glucanase (lichenase) from the anaerobic fungus Orpinomyces strain PC-2: properties of the enzyme expressed in Escherichia coli and evidence that the gene has a bacterial origin. J Bacteriol. 179:1997;6028-6034.
    • (1997) J Bacteriol , vol.179 , pp. 6028-6034
    • Chen, H.1    Li, X.L.2    Ljungdahl, L.G.3
  • 43
    • 0030792359 scopus 로고    scopus 로고
    • An endoglucanase from the anaerobic fungus Orpinomyces joyonii: Characterization of the gene and its product
    • Liu J.H., Selinger L.B., Hu Y.J., Moloney M.M., Cheng K.J., Beauchemin K.A. An endoglucanase from the anaerobic fungus Orpinomyces joyonii: characterization of the gene and its product. Can J Microbiol. 43:1997;477-485.
    • (1997) Can J Microbiol , vol.43 , pp. 477-485
    • Liu, J.H.1    Selinger, L.B.2    Hu, Y.J.3    Moloney, M.M.4    Cheng, K.J.5    Beauchemin, K.A.6
  • 44
    • 0032103829 scopus 로고    scopus 로고
    • Gene clusters and polycistronic transcription in eukaryotes
    • This is a comprehensive review of examples of gene clustering in eukaryotes.
    • Blumenthal T. Gene clusters and polycistronic transcription in eukaryotes. Bioessays. 20:1998;480-487. This is a comprehensive review of examples of gene clustering in eukaryotes.
    • (1998) Bioessays , vol.20 , pp. 480-487
    • Blumenthal, T.1
  • 45
    • 0028965514 scopus 로고
    • Trans-splicing and polycistronic transcription in Caenorhabditis elegans
    • Blumenthal T. Trans-splicing and polycistronic transcription in Caenorhabditis elegans. Trends Genet. 11:1995;132-136.
    • (1995) Trends Genet , vol.11 , pp. 132-136
    • Blumenthal, T.1
  • 46
    • 0032962537 scopus 로고    scopus 로고
    • SL1 trans splicing and 3′-end formation in a novel class of Caenorhabditis elegans operon
    • Williams C., Xu L., Blumenthal T. SL1 trans splicing and 3′-end formation in a novel class of Caenorhabditis elegans operon. Mol Cell Biol. 19:1999;376-383.
    • (1999) Mol Cell Biol , vol.19 , pp. 376-383
    • Williams, C.1    Xu, L.2    Blumenthal, T.3
  • 47
    • 0030475685 scopus 로고    scopus 로고
    • Gene structure and organization in Caenorhabditis elegans
    • Blumenthal T., Spieth J. Gene structure and organization in Caenorhabditis elegans. Curr Opin Genet Dev. 6:1996;692-698.
    • (1996) Curr Opin Genet Dev , vol.6 , pp. 692-698
    • Blumenthal, T.1    Spieth, J.2
  • 49
    • 0030875737 scopus 로고    scopus 로고
    • Gene linkage and steady state RNAs suggest trans-splicing may be associated with a polycistronic transcript in Schistosoma mansoni
    • Davis R.E., Hodgson S. Gene linkage and steady state RNAs suggest trans-splicing may be associated with a polycistronic transcript in Schistosoma mansoni. Mol Biochem Parisitol. 89:1997;25-39.
    • (1997) Mol Biochem Parisitol , vol.89 , pp. 25-39
    • Davis, R.E.1    Hodgson, S.2


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