Novel Approaches to Combat Drug-Resistant Bacteria

New Strategies Combating Bacterial Infection

Volumn , Issue , 2009, Pages 47-70

  Ahmad, Iqbal ^a   Zahin, Maryam ^a   Aqil, Farrukh ^a   Khan, Mohd Sajjad Ahmad ^a   Ahmad, Shamim ^b  

^a ALIGARH MUSLIM UNIVERSITY   (India)

^b ALIGARH MUSLIM UNIVERSITY   (India)

Author keywords

Antibiotic use policy; Combinational approach; Efflux pump inhibition; Genomics; Meta genomics; Microbial products; Multidrug resistance; Phage therapy; Quorum sensing inhibition

Indexed keywords

EID: 68849119877     PISSN: None     EISSN: None     Source Type: Book    
DOI: 10.1002/9783527622931.ch2     Document Type: Chapter

References (122)

1. Pinner, R.W., Teutsch, S.M., Simonsen, L., Klug, L.A., Graber, J.M., Clarke, M.J. and Berkelman, R.L. (1996) Journal of the AmericanMedical Association, 275, 189-193.
2. WHO (2002) Death by Cause, Sex and Mortality Stratum in WHO Regions. Estimates for 2001. World Health Report 2002, WHO, Geneva.
3. Aqil, F., Ahmad, I. and Owais, M. (2006), Targeted screening of bioactive plant extracts and phytocompounds against problematic groups of multidrug resistant bacteria in Modern Phytomedicine: Turning Medicinal Plants into Drugs (eds I. Ahmad, F. Aqil and M. Owais), Wiley-VCH Verlag GmbH, Weinheim, pp. 173-197.
4. Spellberg, B., Powers, J.H., Brass, E.P., Miller, L.G. and Edwards, J. Jr. (2004) Clinical Infectious Diseases 38, 1279-1286.
5. Katz, M.L., Mueller, L.V., Polyakov, M. and Weinstock, S.F. (2006) Nature Biotechnology, 24, 1529-1531.
6. http://csdd.tufts.edu/NewsEvents/ RecentNews.asp?newsid6 (2001).
7. Clardy, J., Fischbach, M.A. and Walsh, C.T. (2006) Nature Biotechnology, 24, 1541-1550.
8. Butler, M.S. and Buss, A.D. (2006) Biochemical Pharmacology, 71, 919-929.
9. Baltz, R.H. (2006) Nature Biotechnology, 24, 1533-1540.
10. Crueger, W. and Crueger, A. (1990) Biotechnology: A Textbook of Industrial Microbiology, 2nd edn (English edition by T.D. Brock), Science Tech, Madison, WI.
11. Lloyd, A.W. (1998) Drug Discovery Today, 3, 480.
12. Lloyd, A.W. (1998) Drug Discovery Today, 5, 122.
13. Tan, Y.T., Tillet, D.J. and McKay, I.A. (2000) Molecular Medicine Today, 6, 309-314.
14. Watve, M.G., Tickoo, R., Jogg, M.M. and Bhole, B.D. (2001) Archives of Microbiology, 176, 386-390.
15. Baltz, R.H. (2005)SIM News, 55, 186-196.
16. Baltz, R.H. (2006) Journal of Industrial Microbiology and Biotechnology, 33, 507-513.
17. Torsvik, V., Goksoyr, J. and Daae, F.L. (1990) Applied and Environmental Microbiology, 56, 782-787.
18. Hugenholtz, P., Goebel, B.M. and Pace, N.R. (1998) Journal of Bacteriology, 180, 4765-4774.
19. Pace, N.R. (1997) Science, 276, 734-740.
20. Kaeberlein, T., Lewis, K. and Epstein, S.S. (2002) Science, 296, 1127-1129.
21. Joseph, S.J.,Hugenholtz, P., Sangwan, P., Osborne, C.A. and Janssen, P.H. (2003) Applied and Environmental Microbiology, 69, 7210-7215.
22. Beer, S.V. and Rundle, J.R. (1983) Phytopathology, 73, 1346.
23. Wright, S.A., Zumoff, C.H., Schneider, L. and Beer, S.V. (2001) Applied and Environmental Microbiology, 67, 284-292.
24. Saano, A. and Lindstrom, K. (1995), Isolation and identification of DNA from soil inMethods in Applied Soil Microbiology and Biochemistry (eds A. Kassem and N. Paolo), Academic Press, San Diego, CA, pp. 440-451.
25. Wang, G.Y.S., Graziani, E., Waters, B., Pan, W., Li, X., McDermott, J., Meurer, G., Saxena, G., Andersen, R.J. and Davies, J. (2000) Organic Letters, 2, 2401-2404.
26. Brady, S. and Clardy, J. (2000) Journal of the American Chemical Society, 122, 12903-12904.
27. MacNeil, I.A., Tiong, C.L., Minor, C., August, P.R., Grossman, T.H., Loiacono, K.A., Lynch, B.A., Phillips, T., Narula, S., Sundaramoorthi, R., Tyler, A., Aldredge, T., Long, H., Gilman, M., Holt, D. and Osburne, M.S. (2001) Journal of Molecular Microbiology and Biotechnology, 3, 301-308.
28. Gillespie, D.E., Brady, S.F., Bettermann, A.D., Cianciotto, N.P., Liles, M.R., Rondon, M.R., Clardy, J., Goodman, R.M. and Handelsman, J. (2002) Applied and Environmental Microbiology, 68, 4301-4306.
29. Bode, H.B. and Muller, R. (2005) Angewandte Chemie (International Edition in English), 44, 6828-6846.
30. Menzella, H.G., Reid, R., Carney, J.R., Chandran, S.S.,Reisinger, S.J.,Patel, K.G., Hopwood, D.A. and Santi, D.V. (2005) Nature Biotechnology, 23, 1171-1176.
31. Gerdes, S.Y., Scholle, M.D., Campbell, J.W., Balazsi, G., Ravasz, E., Daugherty, M.D., Somera, A.L., Kyrpides, N.C., Anderson, I.,Gelfand,M.S., Bhattacharya, A., Kapatral, V., D?Souza, M., Baev, M.V., Grechkin, Y., Mseeh, F., Fonstein, M.Y., Overbeek, R., Barabasi, A.L., Oltvai, Z.N. and Osterman, A.L. (2003) Journal of Bacteriology, 185, 5673-5684.
32. Akerley, B.J., Rubin, E.J., Novick, V.L., Amaya, K., Judson, N. andMekalanos, J.J. (2002) Proceedings of the National Academy of Sciences of the United States of America 99, 966-971.
33. Salama, N.R., Shepherd, B. and Falkow, S. (2004) Journal of Bacteriology, 186, 7926-7935.
34. Forsyth, R.A., Haselbeck, R.J., Ohlsen, K.L., Yamamoto, R.T., Xu, H., Trawick, J.D., Wall, D., Wang, L., Brown- Driver,V., Froelich, J.M., C, K.G., King, P., McCarthy, M., Malone, C., Misiner, B., Robbins, D., Tan, Z., Zhu, Z.Y., Carr, G., Mosca, D.A., Zamudio, C., Foulkes, J.G. and Zyskind, J.W. (2002) Molecular Microbiology, 43, 1387-1400.
35. Ji, Y., Zhang, B., Van Horn, S.F., Warren, P., Woodnutt, G., Burnham, M.K.R. and Rosenberg, M. (2001) Science, 293, 2266-2269.
36. Thanassi, J.A., Hartman-Neumann, S.L., Dougherty, T.J., Dougherty, B.A. and Pucci, M.J. (2002) Nucleic Acids Research, 30, 3152-3162.
37. Freiberg, C. and Oesterhelt, H.B. (2005) Drug Discovery Today: Targets, 10, 927-935.
38. Hutchison, C.A. III, Peterson, S.N., Gill, S.R., Cline, R.T., White, O., Fraser, C.M., Smith, H.O. and Venter, J.C. (1999) Science, 286, 2165-2169.
39. Hare, R.S., Walker, S.S., Dorman, T.E., Greene, J.R., Guzman, L.M., Kenney, T.J., Sulavik, M.C., Baradaran, K., Houseweart, C., Yu, H., Foldes, Z., Motzer, A., Walbridge, M., Shimer, G.H. Jr. and Shaw, K.J. (2001) Journal of Bacteriology, 183, 1694-1706.
40. Kang, Y., Durfee, T., Glasner, J.D., Qiu, Y., Frisch, D., Winterberg, K.M. and Blattner, F.R. (2004) Journal of Bacteriology, 186, 4921-4930.
41. Fischer, H.P., Brunner, N.A., Wieland, B., Paquette, J., Macko, L., Ziegelbauer, K. and Freiberg, C. (2004) Genome Research, 14, 90-98.
42. Bandow, J.E., Brotz, H., Leichert, L.I.O., Labischinski, H. and Hecker, M. (2003) Antimicrobial Agents and Chemotherapy, 47, 948-955.
43. Hutter, B., Schaab, C., Albrecht, S., Borgmann, M., Brunner, N.A., Freiberg, C., Ziegelbauer, K., Rock, C.O., Ivanov, I. and Loferer, H. (2004) Antimicrobial Agents and Chemotherapy, 48, 2838-2844.
44. Ricke, D.O., Wang, S., Cai, R. and Cohen, D. (2006) Current Opinion in Chemical Biology, 10, 303-308.
45. Galperin, M.Y. and Koonin, E.V. (1999) Current Opinion in Biotechnology, 10, 571-578.
46. Allsop, A.E. (1998) Current Opinion in Biotechnology, 9, 637-642.
47. Burrack, L.S. and Higgins, D.E. (2007) Current Opinion in Microbiology, 10, 4-9.
48. Walker, M.J.A., Barrett, T. and Guppy, L.J. (2004) Drug Discovery Today: Targets, 3, 208-214.
49. Huttner, K.M. and Bevins, C.L. (1999) Pediatric Research, 45, 785-794.
50. Breukink, E., Wiedemann, I., van Kraaij, C., Kuipers, O.P., Sahl, H.G. and de Kruijff, B. (1999) Science, 286, 2361-2364.
51. Hancock, R.E.W. and Sahl, H.G. (2006) Nature Biotechnology, 24, 1551-1557.
52. Cottarel, G. and Wierzbowski, J. (2007) Trends in Biotechnology, 25, 547-555.
53. Coates, A., Hu, Y., Bax, R. and Clive, P. (2002) Nature Reviews. Drug Discovery, 1, 895-910.
54. Taylor, P.W., Stapleton, P.D. and Luzioet, J.P. (2002) Drug Discovery Today, 7, 1086-1091.
55. Walsh, C. (2003) Nature Reviews Microbiology, 1, 65-70.
56. Saltini, C. (2006) Respiratory Medicine, 100, 2085-2097.
57. Scollard, D.M., Adams, L.B., Gillis, T.P., Krahenbuhl, J.L., Truman, R.W. and Williams, D.L. (2006) Clinical Microbiology Reviews, 19, 338-381.
58. Borisy, A.A., Elliott, P.J.,Hurst, N.W., Lee, M.S., Lehar, J., Price, E.R., Serbedzija, G., Zimmermann, G.R., Foley, M.A., Stockwell, B.R. and Keith, C.T. (2003) Proceedings of the National Academy of Sciences of the United States of America, 100, 7977-7982.
59. Jacobs, M.R., Jones, R.N. and Giordano, P.A. (2007) Diagnostic Microbiology and Infectious Disease, 57 (Suppl. 3), S55-S65.
60. Mukherjee, P.K., Sheehan, D.J., Hitchcock, C.A. and Ghannoum, M.A. (2005) Clinical Microbiology Reviews, 18, 163-194.
61. Poole, K. (2005) Journal of Antimicrobial Chemotherapy, 56, 20-51.
62. Putman, M., Veen, H.W. and Konings, W.K. (2000) Microbiology and Molecular Biology Reviews, 64, 672-693.
63. Butaye, P., Cloeckaert, A. and Schwarz, S. (2003) International Journal of Antimicrobial Agents, 22, 205-210.
64. Poole, K. and Lomovskaya, O. (2006) Drug Discovery Today: Therapeutic Strategies, 3, 145-152.
65. Lomovskaya, O. and Bostian, K.A. (2006) Biochemical Pharmacology, 71, 910-918.
66. Wright, G.D. (2007) Chemistry and Biology, 7, R127-R132.
67. Miller, L.A., Ratnam, K. and Payne, D.J. (2001) Current Opinion in Pharmacology, 1, 451-458.
68. Hajduk, P.J., Dinges, J., Schkeryantz, J.M., Janowick, D., Kaminski, M., Tufano, M., Augeri, D.J., Petros, A., Nienaber, V., Zhong, P., Hammond, R., Coen, M., Beutel, B., Katz, L. and Fesik, S.W. (1999) Journal of Medicinal Chemistry, 42, 3852-3859.
69. Marquez, B. (2005) Biochimie, 87, 1137-1147.
70. Lomovskaya, O., Lee, A., Hoshino, K., Ishida, H., Mistry, A., Warren, M.S., Boyer, E., Chamberland, S. and Lee, V.J. (1999) Antimicrobial Agents and Chemotherapy, 43, 1340-1346.
71. Alekshun, M.N. and Levy, S.B. (1999) Trends in Microbiology, 7, 410-413.
72. Strahilevitz, J., Truong-Bolduc, Q.C. and Hooper, D.C. (2005) Antimicrobial Agents and Chemotherapy, 49, 5051-5057.
73. Ince, D., Zhang, X., Silver, L.C. and Hooper, D.C. (2002) Antimicrobial Agents and Chemotherapy, 46, 3370-3380.
74. Kaatz, G.W., Moudgal, V.V. and Seoet, S.M. (2002) Journal of Antimicrobial Chemotherapy, 50, 833-838.
75. Jacobs, M.R., Bajaksouzian, S., Windau, A.,Appelbaum, P.C., Patel, M.V., Gupte, S.V., Bhagwat, S.S., De Souza, N.J. and Khorakiwala, H.F. (2004) Antimicrobial Agents and Chemotherapy, 48, 3338-3342.
76. Renau, T.E., Leger, R., Filonova, L., Flamme, E.M., Wang, M., Yen, R., Madsen, D.,Griffith, D., Chamberland, S. and Dudley, M.N. (2003) Bioorganic and MedicinalChemistry Letters, 13, 2755-2758.
77. Watkins, W.J., Landaverry, Y., Leger, R., Litman, R., Renau, T.E.,Williams, N., Yen, R.,Zhang, J.Z.,Chamberland, S.,Madsen, D., Griffith, D., Tembe, V., Huie, K. and Dudley, M.N. (2003) Bioorganic and MedicinalChemistry Letters, 13, 4241-4244.
78. Brenwald, N.,Gill, M. and Wise, R. (1997) Journal of Antimicrobial Chemotherapy, 40, 458-460.
79. Miller, J.H. (1995) Antimicrobial Agents and Chemotherapy, 39, 2375-2377.
80. Miller, J.M.T.H. and Shah, S. (2000) Journal of Antimicrobial Chemotherapy, 46, 852-853.
81. Jodoin, J., Demeule, M. and Beliveau, R. (2002) Biochimica et Biophysica Acta - Molecular Cell Research, 1542, 149-159.
82. Roccaro, A.S., Blanco, A.R., Giuliano, F., Rusciano, D. and Enea, V. (2004) Antimicrobial Agents and Chemotherapy, 48, 1968-1973.
83. Stermitz, F.R., Tawara-Masuda, J., Lorenz, P., Mueller, P., Zenewicz, L. and Lewis, K. (2000) Journal of Natural Products, 63, 1146-1149.
84. Stermitz, F.R., Lorenz, P., Tawara, J.N., Zenewicz, L.A. and Lewis, K. (2000) Proceedings of the National Academy of Sciences of the United States of America, 97, 1433-1437.
85. Chen, X., Schauder, S., Potier, N., Dorsselaer, A.V., Pelczer, I., Bassler, B.L. and Hughson, F.M. (2002) Nature, 415, 545-549.
86. Winson, M.K., Camara, M., Latifi, A., Foglino, M., Chhabra, S.R., Daykin, M., Bally, M., Chapon, V., Salmond, G.P. and Bycroft, B.W. (1995) Proceedings of the National Academy of Sciences of the United States of America, 92, 9427-9431.
87. Passador, L., Tucker, K.D., Guertin, K.R., Journet, M.P., Kende, A.S. and Iglewski, B.H. (1996) Journal of Bacteriology, 178, 5995-6000.
88. Hentzer, M., Wu, H., Andersen, J.B., Riedel, K., Rasmussen, T.B., Bagge, N., Kumar, N., Schemberi, M.A., Song, Z., Kristoffersen, P., Manefield, M., Hoiby, N. and Givskov, M. (2003) EMBO Journal, 22, 3803-3815.
89. Ahmad, I., Aqil, F., Ahmad, F., Zahin, M. andMusarrat, J. (2008), Quorum Sensing in Bacteria: Potential in Plant Health Protection in Plant-Bacteria Interactions (eds I. Ahmad, J. Pitchel and S. Hayat), Wiley-VCH Verlag GmbH, Weinheim, pp. 129-153.
90. Rasmussen, T.B. and Givskov, M. (2006) International Journal of Medical Microbiology, 296, 149-161.
91. Nealson, K.H., Platt, T. and Hastings, J.W. (1970) Journal of Bacteriology, 104, 313-322.
92. Lyczak, J.B., Cannon, C.L. and Pier, G.B. (2002) Clinical Microbiology Reviews, 15, 1059-1067.
93. Hentzer, M. and Givskov, M. (2003) Journal of Clinical Investigation, 122, 1300-1307.
94. McLean, R.J.C., Pierson, L.S. III and Fuqua, C. (2004) Journal of Microbiological Methods, 58, 351-360.
95. Rasmussen, T.B., Bjarnsholt, T., Skindersoe, M.E., Hentzer, M., Kristoffersen, P., Kote, M., Nielsen, J., Eberl, L. and Givskov,M. (2005) Journal of Bacteriology, 187, 1799-1814.
96. Steindler, L. and Venturi, V. (2007) FEMS Microbiology Letters, 266, 1-9.
97. Adonizio, A.I., Downum, K., Bennett, B.C. and Mathee, K. (2006) Journal of Ethnopharmacology, 105, 427-435.
98. Givskov, M., de Nys, R., Manefield, M., Gram, L., Maximilien, R., Eberl, L., Molin, S., Steinberg, P.D. and Kjelleberg, S. (1996) Journal of Bacteriology, 178, 6618-6622.
99. Manefield, M., Rasmussen, T.B.,Henzter, M., Andersen, J.B., Steinberg, P., Kjelleberg, S. and Givskov, M. (2002) Microbiology, 148, 1119-1127.
100. Dong, Y.H., Wang, L.H., Xu, J.L., Zhang, H.B., Zhang, X.F. and Zhang, L.H. (2001) Nature, 411, 813-817.
101. Hentzer, M., Riedel, K., Rasmussen, T.B., Heydorn, A., Anderson, J.B., Parsek, M.R., Rice, S.A., Eberl, L., Molin, S. and Holby,N. (2002) Microbiology, 148, 87-102.
102. Carlier, A., Uroz, S., Smadja, B., Fray, R., Latour, X., Dessaux, Y. and Faure, D. (2003) Applied and Environmental Microbiology, 69, 4989-4993.
103. Park, S.Y.,Kang,H.O., Jang,H.S., Lee, J.K., Koo, B.T. and Yum,D.Y. (2005) Applied and EnvironmentalMicrobiology,71,2632-2641.
104. Ren, D., Zuo, R. and Wood, T.K. (2005) Applied Microbiology and Biotechnology, 66, 689-695.
105. Teplitski, M., Robinson, J.B. and Bauer, W.D. (2000) Molecular Plant-Microbe Interactions, 13, 637-648.
106. Daniels, R., Vanderleyden, J. and Michiels, J. (2004) FEMS Microbiology Reviews, 28, 261-289.
107. Fagerlind, M.G., Nilsson, P., Harlen, M., Karlsson, S., Rice, S.A. and Kjelberg, S. (2005) BioSystems, 80, 201-213.
108. Qazi, S., Middleton, B., Muharram, S.H., Cockayne, A.,Hill,P., O'Shea,P.,Chhabra, S.R., Camara, M. and Williams, P. (2006) Infection and Immunity, 74, 910-919.
109. Sio, C.F., Otten, L.G., Cool, R.H., Diggle, S.P., Braun, P.G., Bos, R., Daykin, M., Camara, M., Williams, P. and Quax, W.J. (2006) Infection and Immunity, 74, 1673-1682.
110. Choo, J.H., Rukayadi, Y. and Hwang, J.K. (2006) Journal of Applied Microbiology, 42, 637-641.
111. Vattem, D.A., Mihalik, S.H., Crixell, S.H. and McLean, R.J.C. (2007) Fitoterapia, 78, 302-310.
112. Ahmad, I.,Hasan, S. andZahin, M. (2007) Paper presented at the 9th Indian Agriculture Scientists and Farmers? Congress, Bioved Research and Communication Center, Allahabad, 29-30 January.
113. Qaseem, F., Zahin, M., Khan, M.S.A. and Ahmad, I. (2008) Paper presented at the 3rd J & K State Science Congress, Jammu, 26-28 February, abstract AGR-54.
114. Schoolnik, G.K., Summers, W.C. and Watson, J.D. (2004) Nature Biotechnology, 22, 505-506.
115. Theil, K. (2004) Nature Biotechnology, 22, 31-36.
116. Fischetti, V.A., Nelson, D. and Scuch, R. (2006)NatureBiotechnology,24,1508-1511.
117. Alisky, J., Iczkowski, K., Rapoport, A. and Troitsky, N. (1998) Journal of Infection, 36, 5-15.
118. Gould, I.M. (2005) Medicine et Maladies Infectieuses, 35, S123-S124.
119. Felmingham, D., Feldman, C., Hryniewicz, W., Klugman, K., Kohno, S., Low, D.E., Mendes, C. and Rodloff, A.C. (2002) Clinical Microbiology and Infection, 8 (Suppl. 2), 12-42.
120. Victor, K.E. (2005) International Journal of Antimicrobial Agents, 26, S1-S63.
121. Cizman, M., Beovic, B., Ktrcmery, V., Barsic, B., Tamm, E., Ludwig, E., Pelemis, M., Karovski, K.,Grzesiowski, P., Gadovska, D., Volokha, A., Keuleyan, E., Stratchounski, L., Dumitru, C., Titov, L.P., Usonis, V. and Dvorak, P. (2004) International Journal of Antimicrobial Agents, 24, 1-6.
122. Stratchounski, L.S., Taylor, E.W., Dellinger, E.P. and Pechere, J.C. (2005) International Journal of Antimicrobial Agents, 26, 312-322.