-
1
-
-
0034951136
-
DNA minor-groove recognition by small molecules
-
Neidle, S. DNA minor-groove recognition by small molecules. Nat. Prod. Rev. 2001, 18, 291-309.
-
(2001)
Nat. Prod. Rev
, vol.18
, pp. 291-309
-
-
Neidle, S.1
-
2
-
-
33847688448
-
Minimization of a protein-DNA dimerizer
-
Stafford, R. L.; Arndt, H.-D.; Brezinski, M. L.; Ansari, A. Z.; Dervan, P. B. Minimization of a protein-DNA dimerizer. J. Am. Chem. Soc. 2007, 129, 2660-2668.
-
(2007)
J. Am. Chem. Soc
, vol.129
, pp. 2660-2668
-
-
Stafford, R.L.1
Arndt, H.-D.2
Brezinski, M.L.3
Ansari, A.Z.4
Dervan, P.B.5
-
3
-
-
0344874246
-
Therapeutic modulation of endogenous gene function by agents with designed DNA-sequence specificities
-
Uil, T. G.; Haisma, H. J.; Rots, M. G. Therapeutic modulation of endogenous gene function by agents with designed DNA-sequence specificities. Nucleic Acids Res. 2003, 31, 6064-6078.
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 6064-6078
-
-
Uil, T.G.1
Haisma, H.J.2
Rots, M.G.3
-
4
-
-
0030951207
-
Regulation of gene expression by small molecules
-
Gottesfeld, J. M.; Neely, L.; Trauger, J. W.; Baird, E. E.; Dervan, P. B. Regulation of gene expression by small molecules. Nature 1997, 387, 202-205.
-
(1997)
Nature
, vol.387
, pp. 202-205
-
-
Gottesfeld, J.M.1
Neely, L.2
Trauger, J.W.3
Baird, E.E.4
Dervan, P.B.5
-
5
-
-
0037832279
-
Recognition of the DNA minor groove by pyrrole-imidazole polyamides
-
Dervan, P. B.; Edelson, B. S. Recognition of the DNA minor groove by pyrrole-imidazole polyamides. Curr. Opin. Struct. Biol. 2003, 13, 264-299.
-
(2003)
Curr. Opin. Struct. Biol
, vol.13
, pp. 264-299
-
-
Dervan, P.B.1
Edelson, B.S.2
-
6
-
-
22144446030
-
Programmable DNA binding oligomers for control of transcription
-
Dervan, P. B.; Doss, R. M.; Marques, M. A. Programmable DNA binding oligomers for control of transcription. Curr. Med. Chem. Anticancer Asents 2005, 5, 373-387.
-
(2005)
Curr. Med. Chem. Anticancer Asents
, vol.5
, pp. 373-387
-
-
Dervan, P.B.1
Doss, R.M.2
Marques, M.A.3
-
7
-
-
3843142798
-
Regulation of gene expression with pyrrole-imidazole polyamides
-
Melander, C.; Burnett, R.; Gottesfeld, J. M. Regulation of gene expression with pyrrole-imidazole polyamides. J. Biotechnol. 2004, 112, 195-220.
-
(2004)
J. Biotechnol
, vol.112
, pp. 195-220
-
-
Melander, C.1
Burnett, R.2
Gottesfeld, J.M.3
-
8
-
-
34548581017
-
-
Nickols, N. G.; Jacobs, C. S.; Farkas, M. E.; Dervan, P. B. Modulating hypoxia-inducible transcription by disrupting the HIF-1-DNA interface. ACS Chem. Biol. 2007, 2, 561-571.
-
Nickols, N. G.; Jacobs, C. S.; Farkas, M. E.; Dervan, P. B. Modulating hypoxia-inducible transcription by disrupting the HIF-1-DNA interface. ACS Chem. Biol. 2007, 2, 561-571.
-
-
-
-
9
-
-
34547496561
-
Suppression of androgen receptor-mediated gene expression by a sequence-specific DNA-binding polyamide
-
Nickols, N. G.; Dervan, P. B. Suppression of androgen receptor-mediated gene expression by a sequence-specific DNA-binding polyamide. Proc. Natl. Acad. Sci. U. S. A. 2007, 104, 10418-10423.
-
(2007)
Proc. Natl. Acad. Sci. U. S. A
, vol.104
, pp. 10418-10423
-
-
Nickols, N.G.1
Dervan, P.B.2
-
10
-
-
6444238707
-
Thiophene-based diamidine forms a "Super" AT binding minor groove agent
-
Mallena, S.; Lee, M. P. H.; Bailly, C.; Neidle, S.; Kumar, A.; Boykin, D. W.; Wilson, W. D. Thiophene-based diamidine forms a "Super" AT binding minor groove agent. J. Am. Chem. Soc. 2004, 126, 13659-13669.
-
(2004)
J. Am. Chem. Soc
, vol.126
, pp. 13659-13669
-
-
Mallena, S.1
Lee, M.P.H.2
Bailly, C.3
Neidle, S.4
Kumar, A.5
Boykin, D.W.6
Wilson, W.D.7
-
11
-
-
3242691639
-
DNA sequence recognition by an isopropyl substituted thiazole polyamide
-
James, P. L.; Merkina, E. E.; Khalaf, A. I.; Suckling, C. J.; Waigh, R. D.; Brown, T.; Fox, K. R. DNA sequence recognition by an isopropyl substituted thiazole polyamide. Nucleic Acids Res. 2004, 32, 3410-3417.
-
(2004)
Nucleic Acids Res
, vol.32
, pp. 3410-3417
-
-
James, P.L.1
Merkina, E.E.2
Khalaf, A.I.3
Suckling, C.J.4
Waigh, R.D.5
Brown, T.6
Fox, K.R.7
-
12
-
-
34548497418
-
Non-covalent ligand/DNA interactions: Minor groove binding agents
-
Nelson, S. M.; Ferguson, L. R.; Denny, W. A. Non-covalent ligand/DNA interactions: minor groove binding agents. Mutat. Res. 2007, 623, 24-40.
-
(2007)
Mutat. Res
, vol.623
, pp. 24-40
-
-
Nelson, S.M.1
Ferguson, L.R.2
Denny, W.A.3
-
13
-
-
35048850834
-
Quantitative microarray profiling of DNA-binding molecules
-
Puckett, J. W.; Muzikar, K. A.; Tietjen, J.; Warren, C. L.; Ansari, A. Z.; Dervan, P. B. Quantitative microarray profiling of DNA-binding molecules. J. Am. Chem. Soc. 2007, 129, 12310-12319.
-
(2007)
J. Am. Chem. Soc
, vol.129
, pp. 12310-12319
-
-
Puckett, J.W.1
Muzikar, K.A.2
Tietjen, J.3
Warren, C.L.4
Ansari, A.Z.5
Dervan, P.B.6
-
14
-
-
0037799592
-
Alternative heterocycles for DNA recognition: The benzimidazole/imidazole pair
-
Briehn, C. A.; Weyermann, P.; Dervan, P. B. Alternative heterocycles for DNA recognition: the benzimidazole/imidazole pair. Chem. - Eur. J. 2003, 9, 2110-2122.
-
(2003)
Chem. - Eur. J
, vol.9
, pp. 2110-2122
-
-
Briehn, C.A.1
Weyermann, P.2
Dervan, P.B.3
-
15
-
-
33847662824
-
Fluorescent sequence-specific dsDNA binding oligomers
-
Chenoweth, D. M.; Viger, A.; Dervan, P. B. Fluorescent sequence-specific dsDNA binding oligomers. J. Am. Chem. Soc. 2007, 129, 2216-2217.
-
(2007)
J. Am. Chem. Soc
, vol.129
, pp. 2216-2217
-
-
Chenoweth, D.M.1
Viger, A.2
Dervan, P.B.3
-
16
-
-
0032475994
-
-
Kielkopf, C. L.; White, S.; Szewczyk, J. W.; Turner, J. M.; Baird, E. E.; Dervan, P. B.; Rees, D. C. A structural basis for recognition of A.T and T.A base pairs in the minor groove of B-DNA. Science 1998, 282, 111-115.
-
Kielkopf, C. L.; White, S.; Szewczyk, J. W.; Turner, J. M.; Baird, E. E.; Dervan, P. B.; Rees, D. C. A structural basis for recognition of A.T and T.A base pairs in the minor groove of B-DNA. Science 1998, 282, 111-115.
-
-
-
-
17
-
-
0032576722
-
Recognition of the four Watson-Crick base pairs in the DNA minor groove by synthetic ligands
-
White, S.; Szewczyk, J. W.; Turner, J. M.; Baird, E. E.; Dervan, P. B. Recognition of the four Watson-Crick base pairs in the DNA minor groove by synthetic ligands. Nature 1998, 391, 468-471.
-
(1998)
Nature
, vol.391
, pp. 468-471
-
-
White, S.1
Szewczyk, J.W.2
Turner, J.M.3
Baird, E.E.4
Dervan, P.B.5
-
18
-
-
0033550509
-
Affinity and specificity of multiple hydroxypyrrole/pyrrole ring pairings for coded recognition of DNA
-
White, S.; Turner, J. M.; Szewczyk, J. W.; Baird, E. E.; Dervan, P. B. Affinity and specificity of multiple hydroxypyrrole/pyrrole ring pairings for coded recognition of DNA. J. Am. Chem. Soc. 1999, 121, 260-261.
-
(1999)
J. Am. Chem. Soc
, vol.121
, pp. 260-261
-
-
White, S.1
Turner, J.M.2
Szewczyk, J.W.3
Baird, E.E.4
Dervan, P.B.5
-
19
-
-
33746034937
-
Programmable oligomers for minor groove DNA recognition
-
Doss, R. M.; Marques, M. A.; Foister, S.; Chenoweth, D. M.; Dervan, P. B. Programmable oligomers for minor groove DNA recognition. J. Am. Chem. Soc. 2006, 128, 9074-9079.
-
(2006)
J. Am. Chem. Soc
, vol.128
, pp. 9074-9079
-
-
Doss, R.M.1
Marques, M.A.2
Foister, S.3
Chenoweth, D.M.4
Dervan, P.B.5
-
20
-
-
44349123357
-
Next generation hairpin polyamides with (R)-3,4-diaminobutyric acid turn unit
-
Dose, C.; Farkas, M. E.; Chenoweth, D. M.; Dervan, P. B. Next generation hairpin polyamides with (R)-3,4-diaminobutyric acid turn unit. J. Am. Chem. Soc. 2008, 130, 6859-6866.
-
(2008)
J. Am. Chem. Soc
, vol.130
, pp. 6859-6866
-
-
Dose, C.1
Farkas, M.E.2
Chenoweth, D.M.3
Dervan, P.B.4
-
21
-
-
38549177533
-
-
Ismail, M. A.; Arafa, R. K.; Wenzler, T.; Bran, R.; Tanious, F. A.; Wilson, W. D.; Boykin, D. W. Synthesis and antiprotozoal activity of novel bis-benzamidino imidazo[1,2-a]pyridines and 5,6,7,8-tetrahydro-imidazo[1,2-a] pyridines. Bioorg. Med. Chem. 2008, 16, 683-691.
-
Ismail, M. A.; Arafa, R. K.; Wenzler, T.; Bran, R.; Tanious, F. A.; Wilson, W. D.; Boykin, D. W. Synthesis and antiprotozoal activity of novel bis-benzamidino imidazo[1,2-a]pyridines and 5,6,7,8-tetrahydro-imidazo[1,2-a] pyridines. Bioorg. Med. Chem. 2008, 16, 683-691.
-
-
-
-
22
-
-
34247880252
-
Induced fit conformational changes of a "reversed amidine" heterocycle: Optimized interactions in a DNA minor groove complex
-
Munde, M.; Lee, M.; Neidle, S.; Arafa, R.; Boykin, D. W.; Liu, Y.; Bailly, C.; Wilson, W. D. Induced fit conformational changes of a "reversed amidine" heterocycle: Optimized interactions in a DNA minor groove complex. J. Am. Chem. Soc. 2007, 129, 5688-5698.
-
(2007)
J. Am. Chem. Soc
, vol.129
, pp. 5688-5698
-
-
Munde, M.1
Lee, M.2
Neidle, S.3
Arafa, R.4
Boykin, D.W.5
Liu, Y.6
Bailly, C.7
Wilson, W.D.8
-
23
-
-
33644980902
-
3D QSAR on a library of heterocyclic diamidine derivatives with antiparasitic activity
-
Athri, P.; Wenzler, T.; Ruiz, P.; Bran, R.; Boykin, D. W.; Tidwell, R.; Wilson, W. D. 3D QSAR on a library of heterocyclic diamidine derivatives with antiparasitic activity. Bioorg. Med. Chem. 2006, 14, 3144-3152.
-
(2006)
Bioorg. Med. Chem
, vol.14
, pp. 3144-3152
-
-
Athri, P.1
Wenzler, T.2
Ruiz, P.3
Bran, R.4
Boykin, D.W.5
Tidwell, R.6
Wilson, W.D.7
-
24
-
-
3042662220
-
DNA minor groove binders as potential antitumor and antimicrobial agents
-
Baraldi, P. G.; Bovero, A.; Frattarolo, D.; Preti, F.; Tabrizi, M. A.; Pavani, M. G.; Romagnoli, R. DNA minor groove binders as potential antitumor and antimicrobial agents. Med. Res. Rev. 2004, 24, 475-528.
-
(2004)
Med. Res. Rev
, vol.24
, pp. 475-528
-
-
Baraldi, P.G.1
Bovero, A.2
Frattarolo, D.3
Preti, F.4
Tabrizi, M.A.5
Pavani, M.G.6
Romagnoli, R.7
-
25
-
-
33646402602
-
Suppression of VEGF transcription in renal cell carcinoma cells by pyrrole-imidazole hairpin polyamides targeting the hypoxia responsive element
-
Kageyama, Y.; Sugiyama, H.; Ayame, H.; Iwai, A.; Fujii, Y.; Huang, L. E.; Kizaka-Kondoh, S.; Hiraoka, M.; Kihara, K. Suppression of VEGF transcription in renal cell carcinoma cells by pyrrole-imidazole hairpin polyamides targeting the hypoxia responsive element. Acta Oncol. 2006, 45, 317-324.
-
(2006)
Acta Oncol
, vol.45
, pp. 317-324
-
-
Kageyama, Y.1
Sugiyama, H.2
Ayame, H.3
Iwai, A.4
Fujii, Y.5
Huang, L.E.6
Kizaka-Kondoh, S.7
Hiraoka, M.8
Kihara, K.9
-
26
-
-
0036519363
-
DNA and its associated processes as targets for cancer therapy
-
Hurley, L. H. DNA and its associated processes as targets for cancer therapy. Nat. Rev. Cancer 2002, 2, 188-200.
-
(2002)
Nat. Rev. Cancer
, vol.2
, pp. 188-200
-
-
Hurley, L.H.1
-
27
-
-
0035962636
-
Transcription therapy for cancer
-
Pandolfi, P. P. Transcription therapy for cancer. Oncogene 2001, 20, 3116-3127.
-
(2001)
Oncogene
, vol.20
, pp. 3116-3127
-
-
Pandolfi, P.P.1
-
28
-
-
8844281944
-
Finding their groove, bifunctional molecules arrest growth of cancer cells
-
Mapp, A. K. Finding their groove, bifunctional molecules arrest growth of cancer cells. Chem. Biol. 2004, 11, 1480-1482.
-
(2004)
Chem. Biol
, vol.11
, pp. 1480-1482
-
-
Mapp, A.K.1
-
29
-
-
0037075143
-
Minor groove DNA binders as antimicrobial agents. 1. Pyrrole tetraamides are potent antibacterials against vancomycin resistant Enteroccoci and methicillin resistant Staphylococcus aureus
-
Dyatkina, N. B.; Roberts, C. D.; Keicher, J. D.; Dai, Y.; Nadherny, J. P.; Zhang, W.; Schmitz, U.; Kongpachith, A.; Fung, K.; Novikov, A. A.; Lou, L.; Velligan, M.; Khorlin, A. A.; Chen, M. S. Minor groove DNA binders as antimicrobial agents. 1. Pyrrole tetraamides are potent antibacterials against vancomycin resistant Enteroccoci and methicillin resistant Staphylococcus aureus. J. Med. Chem. 2002, 45, 805-817.
-
(2002)
J. Med. Chem
, vol.45
, pp. 805-817
-
-
Dyatkina, N.B.1
Roberts, C.D.2
Keicher, J.D.3
Dai, Y.4
Nadherny, J.P.5
Zhang, W.6
Schmitz, U.7
Kongpachith, A.8
Fung, K.9
Novikov, A.A.10
Lou, L.11
Velligan, M.12
Khorlin, A.A.13
Chen, M.S.14
-
30
-
-
11144353762
-
DNA binding ligands with in vivo efficacy in murine models of bacterial infection: Optimization of internal aromatic amino acids
-
Burli, R. W.; Kaizerman, J. A.; Duan, J.-X.; Jones, P.; Johnson, K. W.; Iwamoto, M.; Truong, K.; Hu, W.; Stanton, T.; Chen, A.; Touami, S.; Gross, M.; Jiang, V.; Ge, Y.; Moser, H. E. DNA binding ligands with in vivo efficacy in murine models of bacterial infection: optimization of internal aromatic amino acids. Bioorg. Med. Chem. Lett. 2004, 14, 2067-2072.
-
(2004)
Bioorg. Med. Chem. Lett
, vol.14
, pp. 2067-2072
-
-
Burli, R.W.1
Kaizerman, J.A.2
Duan, J.-X.3
Jones, P.4
Johnson, K.W.5
Iwamoto, M.6
Truong, K.7
Hu, W.8
Stanton, T.9
Chen, A.10
Touami, S.11
Gross, M.12
Jiang, V.13
Ge, Y.14
Moser, H.E.15
-
31
-
-
10744227234
-
DNA binding ligands targeting drug-resistant Gram-positive bacteria. Part 1: Internal benzimidazole derivatives
-
Burli, R. W.; McMinn, D.; Kaizerman, J. A.; Hu, W.; Ge, Y.; Pack, Q.; Jiang, V.; Gross, M.; Garcia, M.; Tanaka, R.; Moser, H. E. DNA binding ligands targeting drug-resistant Gram-positive bacteria. Part 1: Internal benzimidazole derivatives. Bioorg. Med. Chem. Lett. 2004, 14, 1253-1257.
-
(2004)
Bioorg. Med. Chem. Lett
, vol.14
, pp. 1253-1257
-
-
Burli, R.W.1
McMinn, D.2
Kaizerman, J.A.3
Hu, W.4
Ge, Y.5
Pack, Q.6
Jiang, V.7
Gross, M.8
Garcia, M.9
Tanaka, R.10
Moser, H.E.11
-
32
-
-
1242339013
-
DNA binding ligands targeting drug-resistant Gram-positive bacteria. Part 2: C-terminal benzimidazoles and derivatives
-
Burli, R. W.; Jones, P.; McMinn, D.; Le, Q.; Duan, J.-X.; Kaizerman, J. A.; Difuntorum, S.; Moser, H. E. DNA binding ligands targeting drug-resistant Gram-positive bacteria. Part 2: C-terminal benzimidazoles and derivatives. Bioorg. Med. Chem. Lett. 2004, 14, 1259-1263.
-
(2004)
Bioorg. Med. Chem. Lett
, vol.14
, pp. 1259-1263
-
-
Burli, R.W.1
Jones, P.2
McMinn, D.3
Le, Q.4
Duan, J.-X.5
Kaizerman, J.A.6
Difuntorum, S.7
Moser, H.E.8
-
33
-
-
0041418315
-
DNA binding ligands targeting drug-resistant bacteria: Structure, activity, and pharmacology
-
Kaizerman, J. A.; Gross, M. I.; Ge, Y.; White, S.; Hu, W.; Duan, J.-X.; Baird, E. E.; Johnson, K. W.; Tanaka, R. D.; Moser, H. E.; Burli, R. W. DNA binding ligands targeting drug-resistant bacteria: structure, activity, and pharmacology. J. Med. Chem. 2003, 46, 3914-3929.
-
(2003)
J. Med. Chem
, vol.46
, pp. 3914-3929
-
-
Kaizerman, J.A.1
Gross, M.I.2
Ge, Y.3
White, S.4
Hu, W.5
Duan, J.-X.6
Baird, E.E.7
Johnson, K.W.8
Tanaka, R.D.9
Moser, H.E.10
Burli, R.W.11
-
34
-
-
39749126154
-
New bis(2-aminoimidazoline) and bisguanidine DNA minor groove binders with potent in vivo antitrypanosomal and antiplasmodial activity
-
Rodriguez, F.; Rozas, I.; Kaiser, M.; Bran, R.; Nguyen, B.; Wilson, W. D.; Garcia, R. N.; Dardonville, C. New bis(2-aminoimidazoline) and bisguanidine DNA minor groove binders with potent in vivo antitrypanosomal and antiplasmodial activity. J. Med. Chem. 2008, 51, 909-923.
-
(2008)
J. Med. Chem
, vol.51
, pp. 909-923
-
-
Rodriguez, F.1
Rozas, I.2
Kaiser, M.3
Bran, R.4
Nguyen, B.5
Wilson, W.D.6
Garcia, R.N.7
Dardonville, C.8
-
35
-
-
37849011969
-
Antimicrobial lexitropsins containing amide, amidine, and alkene linking groups
-
Anthony, N. G.; Breen, D.; Clarke, J.; Donoghue, G.; Drummond, A. J.; Ellis, E. M.; Gemmell, C. G.; Helesbeux, J.-J.; Hunter, I. S.; Khalaf, A. I.; Mackay, S. P.; Parkinson, J. A.; Suckling, C. J.; Waigh, R. D. Antimicrobial lexitropsins containing amide, amidine, and alkene linking groups. J. Med. Chem. 2007, 50, 6116-6125.
-
(2007)
J. Med. Chem
, vol.50
, pp. 6116-6125
-
-
Anthony, N.G.1
Breen, D.2
Clarke, J.3
Donoghue, G.4
Drummond, A.J.5
Ellis, E.M.6
Gemmell, C.G.7
Helesbeux, J.-J.8
Hunter, I.S.9
Khalaf, A.I.10
Mackay, S.P.11
Parkinson, J.A.12
Suckling, C.J.13
Waigh, R.D.14
-
36
-
-
46949095452
-
-
Suckling, C. J. Molecular recognition and physicochemical properties in the discovery of selective antibacterial minor groove binders. J. Phys. Org. Chem. 2008, 21, 575-583.
-
Suckling, C. J. Molecular recognition and physicochemical properties in the discovery of selective antibacterial minor groove binders. J. Phys. Org. Chem. 2008, 21, 575-583.
-
-
-
-
37
-
-
0043132157
-
DNA binding hairpin polyamides with antifungal activity
-
Marini, N. J.; Baliga, R.; Taylor, M. J.; White, S.; Simpson, P.; Tsai, L.; Baird, E. E. DNA binding hairpin polyamides with antifungal activity. Chem. Biol. 2003, 10, 635-644.
-
(2003)
Chem. Biol
, vol.10
, pp. 635-644
-
-
Marini, N.J.1
Baliga, R.2
Taylor, M.J.3
White, S.4
Simpson, P.5
Tsai, L.6
Baird, E.E.7
-
38
-
-
0031024171
-
Experimental and computational approaches to estimate solubility and permeability in drug discovery and development settings
-
Lipinski, C. A.; Lombardo, F.; Dominy, B. W.; Feeney, P. J. Experimental and computational approaches to estimate solubility and permeability in drug discovery and development settings. Adv. Drug Delivery Rev. 1997, 23, 3-25.
-
(1997)
Adv. Drug Delivery Rev
, vol.23
, pp. 3-25
-
-
Lipinski, C.A.1
Lombardo, F.2
Dominy, B.W.3
Feeney, P.J.4
-
39
-
-
0034461768
-
Drug-like properties and the causes of poor solubility and poor permeability
-
Lipinski, C. A. Drug-like properties and the causes of poor solubility and poor permeability. J. Pharmacol. Toxicol. Methods 2000, 44, 235-249.
-
(2000)
J. Pharmacol. Toxicol. Methods
, vol.44
, pp. 235-249
-
-
Lipinski, C.A.1
-
40
-
-
40749083920
-
An asymmetric C8/C8′-tripyrrole-linked sequence-selective pyrrolo[2,1-c][1,4]benzodiazepine (PBD) dimer DNA interstrand cross-linking agent spanning 11 DNA base pairs
-
Tiberghien, A. C.; Evans, D. A.; Kiakos, K.; Martin, C. R.; Hartley, J. A.; Thurston, D. E.; Howard, P. W. An asymmetric C8/C8′-tripyrrole-linked sequence-selective pyrrolo[2,1-c][1,4]benzodiazepine (PBD) dimer DNA interstrand cross-linking agent spanning 11 DNA base pairs. Bioorg. Med. Chem. Lett. 2008, 18, 2073-2077.
-
(2008)
Bioorg. Med. Chem. Lett
, vol.18
, pp. 2073-2077
-
-
Tiberghien, A.C.1
Evans, D.A.2
Kiakos, K.3
Martin, C.R.4
Hartley, J.A.5
Thurston, D.E.6
Howard, P.W.7
-
41
-
-
16844375686
-
Chemical approaches to the discovery and development of cancer therapies
-
Neidle, S.; Thurston, D. E. Chemical approaches to the discovery and development of cancer therapies. Nat. Rev. Cancer 2005, 5, 285-296.
-
(2005)
Nat. Rev. Cancer
, vol.5
, pp. 285-296
-
-
Neidle, S.1
Thurston, D.E.2
-
42
-
-
0037687485
-
Imidazopyridine/Pyrrole and hydroxy-benzimidazole/pyrrole pairs for DNA minor groove recognition
-
Renneberg, D.; Dervan, P. B. Imidazopyridine/Pyrrole and hydroxy-benzimidazole/pyrrole pairs for DNA minor groove recognition. J. Am. Chem. Soc. 2003, 125, 5707-5716.
-
(2003)
J. Am. Chem. Soc
, vol.125
, pp. 5707-5716
-
-
Renneberg, D.1
Dervan, P.B.2
-
43
-
-
0030133318
-
Extended hairpin polyamide motif for sequence-specific recognition in the minor groove of DNA
-
Trauger, J. W.; Baird, E. E.; Dervan, P. B. Extended hairpin polyamide motif for sequence-specific recognition in the minor groove of DNA. Chem. Biol. 1996, 3, 369-377.
-
(1996)
Chem. Biol
, vol.3
, pp. 369-377
-
-
Trauger, J.W.1
Baird, E.E.2
Dervan, P.B.3
-
44
-
-
0032986773
-
Tandem hairpin motif for recognition in the minor groove of DNA by pyrrole-Imidazole polyamides
-
Herman, D. M.; Baird, E. E.; Dervan, P. B. Tandem hairpin motif for recognition in the minor groove of DNA by pyrrole-Imidazole polyamides. Chem. - Eur. J. 1999, 5, 975-983.
-
(1999)
Chem. - Eur. J
, vol.5
, pp. 975-983
-
-
Herman, D.M.1
Baird, E.E.2
Dervan, P.B.3
-
45
-
-
22844438124
-
Functionalized head-to-head hairpin polyamides: Synthesis, double-stranded DNA-binding activity and affinity
-
Halby, L.; Ryabinin, V. A.; Sinyakov, A. N.; Boutorine, A. S. Functionalized head-to-head hairpin polyamides: synthesis, double-stranded DNA-binding activity and affinity. Bioorg. Med. Chem. Lett. 2005, 15, 3720-3724.
-
(2005)
Bioorg. Med. Chem. Lett
, vol.15
, pp. 3720-3724
-
-
Halby, L.1
Ryabinin, V.A.2
Sinyakov, A.N.3
Boutorine, A.S.4
-
46
-
-
0033576975
-
Cycle polyamide motif for recognition of the minor groove of DNA
-
Herman, D. M.; Turner, J. M.; Baird, E. E.; Dervan, P. B. Cycle polyamide motif for recognition of the minor groove of DNA. J. Am. Chem. Soc. 1999, 121, 1121-1129.
-
(1999)
J. Am. Chem. Soc
, vol.121
, pp. 1121-1129
-
-
Herman, D.M.1
Turner, J.M.2
Baird, E.E.3
Dervan, P.B.4
-
47
-
-
0034671363
-
Discrimination of A/T sequences in the minor groove of DNA within a cyclic polyamide motif
-
Melander, C.; Herman, D. M.; Dervan, P. B. Discrimination of A/T sequences in the minor groove of DNA within a cyclic polyamide motif. Chem. - Eur. J. 2000, 6, 4487-4497.
-
(2000)
Chem. - Eur. J
, vol.6
, pp. 4487-4497
-
-
Melander, C.1
Herman, D.M.2
Dervan, P.B.3
-
48
-
-
0025131974
-
Bioactive compounds from aquatic and terrestrial sources
-
Rinehart, K. L.; Holt, T. G.; Fregeau, N. L.; Keifer, P. A.; Wilson, G. R.; Peran, T. J.; Sakai, R.; Thompson, A. G.; Stroh, J. G.; Shield, L. S. Bioactive compounds from aquatic and terrestrial sources. J. Nat. Prod. 1990, 53, 771-792.
-
(1990)
J. Nat. Prod
, vol.53
, pp. 771-792
-
-
Rinehart, K.L.1
Holt, T.G.2
Fregeau, N.L.3
Keifer, P.A.4
Wilson, G.R.5
Peran, T.J.6
Sakai, R.7
Thompson, A.G.8
Stroh, J.G.9
Shield, L.S.10
-
49
-
-
35048860778
-
-
Carter, N. J.; Keam, S. J. Trabectedin: a review of its use in the management of soft tissue sarcoma and ovarian cancer. Drugs 2007, 67, 2257-2276.
-
Carter, N. J.; Keam, S. J. Trabectedin: a review of its use in the management of soft tissue sarcoma and ovarian cancer. Drugs 2007, 67, 2257-2276.
-
-
-
-
50
-
-
0033954256
-
The Protein Data Bank
-
Berman, H. M.; Westbrook, J.; Feng, Z.; Gilliland, G.; Bhat, T. N.; Weissig, H.; Shindyalov, I. N.; Bourne, P. E. The Protein Data Bank. Nucleic Acids Res. 2000, 28, 235-242.
-
(2000)
Nucleic Acids Res
, vol.28
, pp. 235-242
-
-
Berman, H.M.1
Westbrook, J.2
Feng, Z.3
Gilliland, G.4
Bhat, T.N.5
Weissig, H.6
Shindyalov, I.N.7
Bourne, P.E.8
-
51
-
-
0026742978
-
The nucleic acid database. A comprehensive relational database of three-dimensional structures of nucleic acids
-
Berman, H. M.; Olson, W. K.; Beveridge, D. L.; Westbrook, J.; Gelbin, A.; Demeny, T.; Hsieh, S. H.; Srinivasan, A. R.; Schneider, B. The nucleic acid database. A comprehensive relational database of three-dimensional structures of nucleic acids. Biophys. J. 1992, 63, 751-759.
-
(1992)
Biophys. J
, vol.63
, pp. 751-759
-
-
Berman, H.M.1
Olson, W.K.2
Beveridge, D.L.3
Westbrook, J.4
Gelbin, A.5
Demeny, T.6
Hsieh, S.H.7
Srinivasan, A.R.8
Schneider, B.9
-
52
-
-
0029814566
-
Hydrogen bond geometry in DNA-minor groove binding drug complexes
-
Tabernero, L.; Bella, J.; Aleman, C. Hydrogen bond geometry in DNA-minor groove binding drug complexes. Nucleic Acids Res. 1996, 24, 3458-3466.
-
(1996)
Nucleic Acids Res
, vol.24
, pp. 3458-3466
-
-
Tabernero, L.1
Bella, J.2
Aleman, C.3
-
53
-
-
34249655673
-
-
Auffinger, P.; Hashem, Y. SwS: a solvation web service for nucleic acids. Bioinformatics 2007, 23, 1035-1037.
-
Auffinger, P.; Hashem, Y. SwS: a solvation web service for nucleic acids. Bioinformatics 2007, 23, 1035-1037.
-
-
-
-
54
-
-
0024599312
-
Definitions and nomenclature of nucleic acid structure components
-
Dickerson, R. E. Definitions and nomenclature of nucleic acid structure components. Nucleic Acids Res. 1989, 17, 1797-1803.
-
(1989)
Nucleic Acids Res
, vol.17
, pp. 1797-1803
-
-
Dickerson, R.E.1
-
55
-
-
0028823008
-
Hydration of the DNA bases is local
-
Schneider, B.; Berman, H. M. Hydration of the DNA bases is local. Biophys. J. 1995, 69, 2661-2669.
-
(1995)
Biophys. J
, vol.69
, pp. 2661-2669
-
-
Schneider, B.1
Berman, H.M.2
-
56
-
-
0035393302
-
Amino acid-base interactions: A three-dimensional analysis of protein-DNA interactions at an atomic level
-
Luscombe, N. M.; Laskowski, R. A.; Thornton, J. M. Amino acid-base interactions: a three-dimensional analysis of protein-DNA interactions at an atomic level. Nucleic Acids Res. 2001, 29, 2860-2874.
-
(2001)
Nucleic Acids Res
, vol.29
, pp. 2860-2874
-
-
Luscombe, N.M.1
Laskowski, R.A.2
Thornton, J.M.3
-
57
-
-
21244457959
-
Knowledge-based elastic potentials for docking drugs or proteins with nucleic acids
-
Ge, W.; Schneider, B.; Olson, W. K. Knowledge-based elastic potentials for docking drugs or proteins with nucleic acids. Biophys. J. 2005, 88, 1166-1190.
-
(2005)
Biophys. J
, vol.88
, pp. 1166-1190
-
-
Ge, W.1
Schneider, B.2
Olson, W.K.3
-
58
-
-
66149147188
-
-
DeLano, W. L. The PyMOL Molecular Graphics System version 1.0; DeLano Scientific LLC: Palo Alto, CA, 2008, accessed Feb 06, 2009
-
DeLano, W. L. The PyMOL Molecular Graphics System version 1.0; DeLano Scientific LLC: Palo Alto, CA, 2008. http://www.pymol.org (accessed Feb 06, 2009).
-
-
-
-
59
-
-
0036293526
-
Structure of a beta-alanine-linked polyamide bound to a full helical turn of purine tract DNA in the 1:1 motif
-
Urbach, A. R.; Love, J. J.; Ross, S. A.; Dervan, P. B. Structure of a beta-alanine-linked polyamide bound to a full helical turn of purine tract DNA in the 1:1 motif. J. Mol. Biol. 2002, 320, 55-71.
-
(2002)
J. Mol. Biol
, vol.320
, pp. 55-71
-
-
Urbach, A.R.1
Love, J.J.2
Ross, S.A.3
Dervan, P.B.4
-
60
-
-
0035850731
-
A standard reference frame for the description of nucleic acid base-pair geometry
-
Olson, W. K.; et al. A standard reference frame for the description of nucleic acid base-pair geometry. J. Mol. Biol. 2001, 313, 229-237.
-
(2001)
J. Mol. Biol
, vol.313
, pp. 229-237
-
-
Olson, W.K.1
-
61
-
-
0030051966
-
Geometric parameters in nucleic acids: Nitrogenous bases
-
Clowney, L.; Jain, S. C.; Srinivasan, A. R.; Westbrook, J.; Olson, W. K.; Berman, H. M. Geometric parameters in nucleic acids: nitrogenous bases. J. Am. Chem. Soc. 1996, 118, 509-518.
-
(1996)
J. Am. Chem. Soc
, vol.118
, pp. 509-518
-
-
Clowney, L.1
Jain, S.C.2
Srinivasan, A.R.3
Westbrook, J.4
Olson, W.K.5
Berman, H.M.6
-
62
-
-
33747802145
-
A thermodynamic signature for drug-DNA binding mode
-
Chaires, J. B. A thermodynamic signature for drug-DNA binding mode. Arch. Biochem. Biophys. 2006, 453, 26-31.
-
(2006)
Arch. Biochem. Biophys
, vol.453
, pp. 26-31
-
-
Chaires, J.B.1
-
63
-
-
0034695413
-
Structural effects of DNA sequence on T.A recognition by hydroxypyrrole/pyrrole pairs in the minor groove
-
Kielkopf, C. L.; Bremer, R. E.; White, S.; Szewczyk, J. W.; Turner, J. M.; Baird, E. E.; Dervan, P. B.; Rees, D. C. Structural effects of DNA sequence on T.A recognition by hydroxypyrrole/pyrrole pairs in the minor groove. J. Mol. Biol. 2000, 295, 557-567.
-
(2000)
J. Mol. Biol
, vol.295
, pp. 557-567
-
-
Kielkopf, C.L.1
Bremer, R.E.2
White, S.3
Szewczyk, J.W.4
Turner, J.M.5
Baird, E.E.6
Dervan, P.B.7
Rees, D.C.8
-
64
-
-
0035185484
-
Alternative heterocycles for DNA recognition: An N-methylpyrazole/N-methylpyrrole pair specifies for A.T/T.A base pairs
-
Nguyen, D. H.; Szewczyk, J. W.; Baird, E. E.; Dervan, P. B. Alternative heterocycles for DNA recognition: an N-methylpyrazole/N-methylpyrrole pair specifies for A.T/T.A base pairs. Bioorg. Med. Chem. 2001, 9, 7-17.
-
(2001)
Bioorg. Med. Chem
, vol.9
, pp. 7-17
-
-
Nguyen, D.H.1
Szewczyk, J.W.2
Baird, E.E.3
Dervan, P.B.4
-
65
-
-
0033596292
-
Sequence selectivity of 3-hydroxypyrrole/pyrrole ring pairings in the DNA minor groove
-
Urbach, A. R.; Szewczyk, J. W.; White, S.; Turner, J. M.; Baird, E. E.; Dervan, P. B. Sequence selectivity of 3-hydroxypyrrole/pyrrole ring pairings in the DNA minor groove. J. Am. Chem. Soc. 1999, 121, 11621-11629.
-
(1999)
J. Am. Chem. Soc
, vol.121
, pp. 11621-11629
-
-
Urbach, A.R.1
Szewczyk, J.W.2
White, S.3
Turner, J.M.4
Baird, E.E.5
Dervan, P.B.6
-
66
-
-
34547659350
-
Sequence specific feature based pharmacophores for DNA minor groove description
-
Spitzer, G. M.; Wellenzohn, B.; Laggner, C.; Langer, T.; Liedl, K. R. Sequence specific feature based pharmacophores for DNA minor groove description. J. Chem. Inf. Model. 2007, 47, 1580-1589.
-
(2007)
J. Chem. Inf. Model
, vol.47
, pp. 1580-1589
-
-
Spitzer, G.M.1
Wellenzohn, B.2
Laggner, C.3
Langer, T.4
Liedl, K.R.5
-
67
-
-
28944436801
-
In silico footprinting of ligands binding to the minor groove of DNA
-
Anthony, N. G.; Huchet, G.; Johnston, B. F.; Parkinson, J. A.; Suckling, C. J.; Waigh, R. D.; Mackay, S. P. In silico footprinting of ligands binding to the minor groove of DNA. J. Chem. Inf. Model. 2005, 45, 1896-1907.
-
(2005)
J. Chem. Inf. Model
, vol.45
, pp. 1896-1907
-
-
Anthony, N.G.1
Huchet, G.2
Johnston, B.F.3
Parkinson, J.A.4
Suckling, C.J.5
Waigh, R.D.6
Mackay, S.P.7
-
68
-
-
0025179321
-
Interaction of berenil with the tyrT DNA sequence studied by footprinting and molecular modelling. Implications for the design of sequence-specific DNA recognition agents
-
Laughton, C. A.; Jenkins, T. C.; Fox, K. R.; Neidle, S. Interaction of berenil with the tyrT DNA sequence studied by footprinting and molecular modelling. Implications for the design of sequence-specific DNA recognition agents. Nucleic Acids Res. 1990, 18, 4479-4488.
-
(1990)
Nucleic Acids Res
, vol.18
, pp. 4479-4488
-
-
Laughton, C.A.1
Jenkins, T.C.2
Fox, K.R.3
Neidle, S.4
-
69
-
-
15044348176
-
An ab initio QM/MM study of the conformational stability of complexes formed by netropsin and DNA. The importance of van der Waals interactions and hydrogen bonding
-
Dolenc, J.; Borstnik, U.; Hodoscek, M.; Roller, J.; Janezic, D. An ab initio QM/MM study of the conformational stability of complexes formed by netropsin and DNA. The importance of van der Waals interactions and hydrogen bonding. THEOCHEM 2005, 718, 77-85.
-
(2005)
THEOCHEM
, vol.718
, pp. 77-85
-
-
Dolenc, J.1
Borstnik, U.2
Hodoscek, M.3
Roller, J.4
Janezic, D.5
-
70
-
-
0036493160
-
Protein and drug interactions in the minor groove of DNA
-
Moravek, Z.; Neidle, S.; Schneider, B. Protein and drug interactions in the minor groove of DNA. Nucleic Acids Res. 2002, 30, 1182-1191.
-
(2002)
Nucleic Acids Res
, vol.30
, pp. 1182-1191
-
-
Moravek, Z.1
Neidle, S.2
Schneider, B.3
-
71
-
-
58049143543
-
Sequence-Specific Positions of Water Molecules at the Interface between DNA and Minor Groove Binders
-
Spitzer, G. M.; Fuchs, J. E.; Markt, P.; Kirchmair, J.; Wellenzohn, B.; Langer, T.; Liedl, K. R. Sequence-Specific Positions of Water Molecules at the Interface between DNA and Minor Groove Binders. ChemPhysChem 2008, 9, 2766-2771.
-
(2008)
ChemPhysChem
, vol.9
, pp. 2766-2771
-
-
Spitzer, G.M.1
Fuchs, J.E.2
Markt, P.3
Kirchmair, J.4
Wellenzohn, B.5
Langer, T.6
Liedl, K.R.7
-
72
-
-
0031722426
-
An Analysis of the Relationship between Hydration and Protein-DNA Interactions
-
Woda, J.; Schneider, B.; Patel, K.; Mistry, K.; Berman, H. M. An Analysis of the Relationship between Hydration and Protein-DNA Interactions. Biophys. J. 1998, 75, 2170-2177.
-
(1998)
Biophys. J
, vol.75
, pp. 2170-2177
-
-
Woda, J.1
Schneider, B.2
Patel, K.3
Mistry, K.4
Berman, H.M.5
-
73
-
-
0028942808
-
Analysis of van der Waals and electrostatic contributions in the interactions of minor groove binding benzimidazoles with DNA
-
Czarny, A.; Boykin, D. W.; Wood, A. A.; Nunn, C. M.; Neidle, S.; Zhao, M.; Wilson, W. D. Analysis of van der Waals and electrostatic contributions in the interactions of minor groove binding benzimidazoles with DNA. J. Am. Chem. Soc. 1995, 117, 4716-4717.
-
(1995)
J. Am. Chem. Soc
, vol.117
, pp. 4716-4717
-
-
Czarny, A.1
Boykin, D.W.2
Wood, A.A.3
Nunn, C.M.4
Neidle, S.5
Zhao, M.6
Wilson, W.D.7
-
74
-
-
0034710720
-
DNA binding, solubility, and partitioning characteristics of extended lexitropsins
-
Fishleigh, R. V.; Fox, K. R.; Khalaf, A. I.; Pitt, A. R.; Scobie, M.; Suckling, C. J.; Urwin, J.; Waigh, R. D.; Young, S. C. DNA binding, solubility, and partitioning characteristics of extended lexitropsins. J. Med. Chem. 2000, 43, 3257-3266.
-
(2000)
J. Med. Chem
, vol.43
, pp. 3257-3266
-
-
Fishleigh, R.V.1
Fox, K.R.2
Khalaf, A.I.3
Pitt, A.R.4
Scobie, M.5
Suckling, C.J.6
Urwin, J.7
Waigh, R.D.8
Young, S.C.9
|