SwS: A solvation web service for nucleic acids

Bioinformatics

Volumn 23, Issue 8, 2007, Pages 1035-1037

  Auffinger, Pascal ^a   Hashem, Yaser ^a  

^a INSTITUT DE BIOLOGIE MOLÉCULAIRE ET CELLULAIRE   (France)

Author keywords

[No Author keywords available]

Indexed keywords

ANION; CATION; DNA; NUCLEOTIDE; RNA; WATER; NUCLEIC ACID;

CONFORMATION; CRYSTAL STRUCTURE; CRYSTALLOGRAPHY; DNA BINDING; DRUG DESIGN; HYDROGEN BOND; MOLECULAR DYNAMICS; NUCLEIC ACID STRUCTURE; ONLINE SYSTEM; PRIORITY JOURNAL; REVIEW; RNA BINDING; SOLVATION; STATISTICAL ANALYSIS; STRUCTURAL BIOINFORMATICS; VALIDATION PROCESS; ALGORITHM; ARTICLE; CHEMICAL MODEL; CHEMICAL STRUCTURE; CHEMISTRY; COMPUTER PROGRAM; COMPUTER SIMULATION; DNA SEQUENCE; INTERNET; METHODOLOGY; ULTRASTRUCTURE;

ALGORITHMS; COMPUTER SIMULATION; CRYSTALLOGRAPHY; INTERNET; MODELS, CHEMICAL; MODELS, MOLECULAR; NUCLEIC ACID CONFORMATION; NUCLEIC ACIDS; SEQUENCE ANALYSIS, DNA; SOFTWARE;

EID: 34249655673     PISSN: 13674803     EISSN: 13674811     Source Type: Journal    
DOI: 10.1093/bioinformatics/btm067     Document Type: Review

References (8)

1. Auffinger,P. and Westhof,E. (1998) Hydration of RNA base pairs. J. Biomol. Struct. Dyn, 16, 693-707.
2. Auffinger,P. and Westhof,E. (2000) RNA solvation: A molecular dynamics simulation perspective. Biopolymers, 56, 266-274.
3. Berman,H.M. et al. (2002) The nucleic acid database. Acta Cryst., D58, 889-898.
4. Collaborative Computational Project No. 4 (1994) The CCP4 suite: programs for protein crystallography. Acta Cryst., D50, 760-763.
5. Hartshorn,M.J. (2002) AstexViewer: A visualisation aid for structure-based drug design. J. Comput. Aided Mol. Des., 16, 871-881.
6. Leontis,N.B. and Westhof, (2002) The non-Watson-Crick base pairs and their associated isostericity matrices. Nucleic Acids Res., 30 3497-3531.
7. Lu,X.J. and Olson,W.K. (2003) 3DNA: A software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures. Nucleic Acids Res., 31, 5108-5121.
8. Schneider,B. and Berman,H.M. (1995) Hydration of the DNA bases is local. Biophys. J, 69, 2661-2669.