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Volumn 98, Issue 3, 2009, Pages 861-893

Calculation of molecular lipophilicity: State-of-the-art and comparison of log P methods on more than 96,000 compounds

Author keywords

Atom based methods; Consensus model; Continuum solvation models; Electrotopological state (E state) descriptors; Empirical approaches; Fragmental methods; Graph molecular connectivity; Lattice energy calculations; Lipophilicity; Log P calculation; Methods based on 3D structure representation; Molecular dynamics calculations; Molecular lipophilicity potential; Property based approaches; Quantum chemical semi empirical calculations; Substructure based approaches; Topological descriptors

Indexed keywords

CARBON;

EID: 62849112750     PISSN: 00223549     EISSN: 15206017     Source Type: Journal    
DOI: 10.1002/jps.21494     Document Type: Review
Times cited : (541)

References (170)
  • 1
    • 0022272070 scopus 로고
    • Partitioning and lipophilicity in quantitative structure-activity relationships
    • Dearden JC. 1985. Partitioning and lipophilicity in quantitative structure-activity relationships. Environ Health Perspect 61:203-228.
    • (1985) Environ Health Perspect , vol.61 , pp. 203-228
    • Dearden, J.C.1
  • 3
    • 0018624198 scopus 로고
    • Lipophilicity and drug activity
    • Kubinyi H. 1979. Lipophilicity and drug activity. Prog Drug Res 23:97-198.
    • (1979) Prog Drug Res , vol.23 , pp. 97-198
    • Kubinyi, H.1
  • 4
    • 0031024171 scopus 로고    scopus 로고
    • Experimental and computational approaches to estimate solubility and permeability in drug discovery and development settings
    • Lipinski CA, Lombardo F, Dominy BW, Feeney PJ. 1997. Experimental and computational approaches to estimate solubility and permeability in drug discovery and development settings. Adv Drug Deliv Rev 23:3-25.
    • (1997) Adv Drug Deliv Rev , vol.23 , pp. 3-25
    • Lipinski, C.A.1    Lombardo, F.2    Dominy, B.W.3    Feeney, P.J.4
  • 5
    • 3042781869 scopus 로고    scopus 로고
    • In silico ADME prediction: Data, models, facts and myths
    • Lombardo F, Gifford E, Shalaeva MY. 2003. In silico ADME prediction: Data, models, facts and myths. Mini Rev Med Chem 3:861-875.
    • (2003) Mini Rev Med Chem , vol.3 , pp. 861-875
    • Lombardo, F.1    Gifford, E.2    Shalaeva, M.Y.3
  • 7
    • 0029865450 scopus 로고    scopus 로고
    • Design of drugs involving the concepts and theories of drug metabolism and pharmacokinetics
    • Smith DA, Jones BC, Walker DK. 1996. Design of drugs involving the concepts and theories of drug metabolism and pharmacokinetics. Med Res Rev 16:242-266.
    • (1996) Med Res Rev , vol.16 , pp. 242-266
    • Smith, D.A.1    Jones, B.C.2    Walker, D.K.3
  • 9
    • 0030265473 scopus 로고    scopus 로고
    • The World Wide Web as a graphical user interface to program macros for molecular graphics, molecular modeling, and structure-based drug design
    • Taylor NR, Smith R. 1996. The World Wide Web as a graphical user interface to program macros for molecular graphics, molecular modeling, and structure-based drug design. J Mol Graph 14:291-296.
    • (1996) J Mol Graph , vol.14 , pp. 291-296
    • Taylor, N.R.1    Smith, R.2
  • 12
    • 0001938735 scopus 로고
    • The parametrization of lipophilicity and other structural properties in drug design
    • Testa B, editor, London: Academic Press. pp
    • Van de Waterbeemd H, Testa B. 1987. The parametrization of lipophilicity and other structural properties in drug design. In: Testa B, editor. Advances in drug research. London: Academic Press. pp 85-225.
    • (1987) Advances in drug research , pp. 85-225
    • Van de Waterbeemd, H.1    Testa, B.2
  • 13
    • 0035953319 scopus 로고    scopus 로고
    • Property-based design: Optimization of drug absorption and pharmacokinetics
    • van De Waterbeemd H, Smith DA, Beaumont K, Walker DK. 2001. Property-based design: Optimization of drug absorption and pharmacokinetics. J Med Chem 44:1313-1333.
    • (2001) J Med Chem , vol.44 , pp. 1313-1333
    • van De Waterbeemd, H.1    Smith, D.A.2    Beaumont, K.3    Walker, D.K.4
  • 14
    • 0037364162 scopus 로고    scopus 로고
    • ADMET in silico modelling: Towards prediction paradise?
    • van de Waterbeemd H, Gifford E. 2003. ADMET in silico modelling: Towards prediction paradise? Nat Rev Drug Discov 2:192-204.
    • (2003) Nat Rev Drug Discov , vol.2 , pp. 192-204
    • van de Waterbeemd, H.1    Gifford, E.2
  • 18
    • 0034213636 scopus 로고    scopus 로고
    • Predicting blood-brain barrier permeation from three-dimensional molecular structure
    • Crivori P, Cruciani G, Carrupt PA, Testa B. 2000. Predicting blood-brain barrier permeation from three-dimensional molecular structure. J Med Chem 43:2204-2216.
    • (2000) J Med Chem , vol.43 , pp. 2204-2216
    • Crivori, P.1    Cruciani, G.2    Carrupt, P.A.3    Testa, B.4
  • 19
    • 33845954636 scopus 로고    scopus 로고
    • The role of hydrophobicity in toxicity prediction
    • Cronin MTD. 2006. The role of hydrophobicity in toxicity prediction. Curr Comput-Aided Drug Des 2:405-413.
    • (2006) Curr Comput-Aided Drug Des , vol.2 , pp. 405-413
    • Cronin, M.T.D.1
  • 20
    • 0033820354 scopus 로고    scopus 로고
    • The influence of lipophilicity on the pharmacokinetic behavior of drugs: Concepts and examples
    • Testa B, Crivori P, Reist M, Carrupt PA. 2000. The influence of lipophilicity on the pharmacokinetic behavior of drugs: Concepts and examples. Perspect Drug Discov Des 19:179-211.
    • (2000) Perspect Drug Discov Des , vol.19 , pp. 179-211
    • Testa, B.1    Crivori, P.2    Reist, M.3    Carrupt, P.A.4
  • 24
    • 33749000228 scopus 로고
    • A new substituent constant, p, derived from partition coefficients
    • Fujita T, Iwasa J, Hansch C. 1964. A new substituent constant, p, derived from partition coefficients. J Am Chem Soc 86:5175-5180.
    • (1964) J Am Chem Soc , vol.86 , pp. 5175-5180
    • Fujita, T.1    Iwasa, J.2    Hansch, C.3
  • 25
    • 0016350063 scopus 로고
    • The concept of hydrophobic fragmental constants (f-values). II. Extension of its applicability to the calculation of lipophilicities of aromatic and hetero-aromatic structures
    • Nys GG, Rekker RF. 1974. The concept of hydrophobic fragmental constants (f-values). II. Extension of its applicability to the calculation of lipophilicities of aromatic and hetero-aromatic structures. Chim Ther 9:361-374.
    • (1974) Chim Ther , vol.9 , pp. 361-374
    • Nys, G.G.1    Rekker, R.F.2
  • 26
    • 0003886163 scopus 로고
    • The hydrophobic fragmental constant. Its derivation and application
    • Amsterdam: Elsevier
    • Rekker RF. 1977. The hydrophobic fragmental constant. Its derivation and application. A means of characterizing membrane systems. Amsterdam: Elsevier.
    • (1977) A means of characterizing membrane systems
    • Rekker, R.F.1
  • 27
    • 0018607849 scopus 로고
    • The hydrophobic fragmental constant; an extension to a 1000 data point set
    • Rekker RF, de Kort HM. 1979. The hydrophobic fragmental constant; an extension to a 1000 data point set. Eur J Med Chem 14:479-488.
    • (1979) Eur J Med Chem , vol.14 , pp. 479-488
    • Rekker, R.F.1    de Kort, H.M.2
  • 28
    • 0015755443 scopus 로고
    • Statistical analysis of a series of partition coefficients with special reference to the predictability of folding of drug molecules. Introduction of hydrophobic fragmental constants (f-values)
    • Nys GG, Rekker RF. 1973. Statistical analysis of a series of partition coefficients with special reference to the predictability of folding of drug molecules. Introduction of hydrophobic fragmental constants (f-values). Chim Ther 8:521-535.
    • (1973) Chim Ther , vol.8 , pp. 521-535
    • Nys, G.G.1    Rekker, R.F.2
  • 29
    • 0031706070 scopus 로고    scopus 로고
    • Octanol-water partition: Searching for predictive models
    • Buchwald P, Bodor N. 1998. Octanol-water partition: Searching for predictive models. Curr Med Chem 5:353-380.
    • (1998) Curr Med Chem , vol.5 , pp. 353-380
    • Buchwald, P.1    Bodor, N.2
  • 30
    • 0031517389 scopus 로고    scopus 로고
    • Computational approaches to lipophilicity: Methods and applications
    • Carrupt PA, Testa B, Gaillard P. 1997. Computational approaches to lipophilicity: Methods and applications. Rev Comput Chem 11:241-315.
    • (1997) Rev Comput Chem , vol.11 , pp. 241-315
    • Carrupt, P.A.1    Testa, B.2    Gaillard, P.3
  • 31
    • 14544278461 scopus 로고    scopus 로고
    • Recent methodologies for the estimation of n-octanol/water partition coefficients and their use in the prediction of membrane transport properties of drugs
    • Klopman G, Zhu H. 2005. Recent methodologies for the estimation of n-octanol/water partition coefficients and their use in the prediction of membrane transport properties of drugs. Mini Rev Med Chem 5:127-133.
    • (2005) Mini Rev Med Chem , vol.5 , pp. 127-133
    • Klopman, G.1    Zhu, H.2
  • 32
    • 0032197149 scopus 로고    scopus 로고
    • Multivariate analysis of experimental and computational descriptors of molecular lipophilicity
    • Mannhold R, Cruciani G, Dross K, Rekker R. 1998. Multivariate analysis of experimental and computational descriptors of molecular lipophilicity. J Comput-Aided Mol Des 12:573-581.
    • (1998) J Comput-Aided Mol Des , vol.12 , pp. 573-581
    • Mannhold, R.1    Cruciani, G.2    Dross, K.3    Rekker, R.4
  • 33
    • 0029845112 scopus 로고    scopus 로고
    • Calculation procedures for molecular lipophilicity: A comparative study
    • Mannhold R, Dross K. 1996. Calculation procedures for molecular lipophilicity: A comparative study. Quant Struct-Activ Rel 15:403-409.
    • (1996) Quant Struct-Activ Rel , vol.15 , pp. 403-409
    • Mannhold, R.1    Dross, K.2
  • 35
    • 0032450868 scopus 로고    scopus 로고
    • The lipophilic behaviour of organic compounds: 1. An updating of the hydrophobic fragmental constant approach
    • Mannhold R, Rekker RF, Dross K, Bijloo G, de Vries G. 1998. The lipophilic behaviour of organic compounds: 1. An updating of the hydrophobic fragmental constant approach. Quant Struct-Activ Rel 17:517-536.
    • (1998) Quant Struct-Activ Rel , vol.17 , pp. 517-536
    • Mannhold, R.1    Rekker, R.F.2    Dross, K.3    Bijloo, G.4    de Vries, G.5
  • 37
    • 0028464119 scopus 로고
    • Computer automated log P calculations based on an extended group contribution approach
    • Klopman G, Li J-Y, Wang S, Dimayuga M. 1994. Computer automated log P calculations based on an extended group contribution approach. J Chem Inf Comput Sci 34:752-781.
    • (1994) J Chem Inf Comput Sci , vol.34 , pp. 752-781
    • Klopman, G.1    Li, J.-Y.2    Wang, S.3    Dimayuga, M.4
  • 39
    • 8644243613 scopus 로고
    • Partition coefficients and their uses
    • Leo A, Hansch C, Elkins D. 1971. Partition coefficients and their uses. Chem Rev 61:525-616.
    • (1971) Chem Rev , vol.61 , pp. 525-616
    • Leo, A.1    Hansch, C.2    Elkins, D.3
  • 40
    • 0025439652 scopus 로고
    • Automated logP estimation based on combined additive modeling methods
    • Suzuki T, Kudo Y. 1990. Automated logP estimation based on combined additive modeling methods. J Comput-Aided Mol Des 4:155-198.
    • (1990) J Comput-Aided Mol Des , vol.4 , pp. 155-198
    • Suzuki, T.1    Kudo, Y.2
  • 41
    • 0024716284 scopus 로고
    • Atomic physicochemical parameters for three dimensional structure directed quantitative structure-activity relationships. 4. Additional parameters for hydrophobic and dispersive interactions and their application for an automated superposition of certain naturally occurring nucleoside antibiotics
    • Viswanadhan VN, Ghose AK, Revankar GR, Robins RK. 1989. Atomic physicochemical parameters for three dimensional structure directed quantitative structure-activity relationships. 4. Additional parameters for hydrophobic and dispersive interactions and their application for an automated superposition of certain naturally occurring nucleoside antibiotics. J Chem Inf Comput Sci 9:163-172.
    • (1989) J Chem Inf Comput Sci , vol.9 , pp. 163-172
    • Viswanadhan, V.N.1    Ghose, A.K.2    Revankar, G.R.3    Robins, R.K.4
  • 42
    • 0000486708 scopus 로고
    • Assessment of methods used for predicting lipophilicity: Application to nucleosides and nucleoside bases
    • Viswanadhan VN, Reddy MR, Bacquet RJ. Erion MD. 1993. Assessment of methods used for predicting lipophilicity: Application to nucleosides and nucleoside bases. J Comput Chem 14:1019-1026.
    • (1993) J Comput Chem , vol.14 , pp. 1019-1026
    • Viswanadhan, V.N.1    Reddy, M.R.2    Bacquet, R.J.3    Erion, M.D.4
  • 43
    • 0026778110 scopus 로고
    • MULTICASE 1. A hierarchical computer automated structure evaluation program
    • Klopman G. 1992. MULTICASE 1. A hierarchical computer automated structure evaluation program. Quant Struct-Activ Rel 11:176-184.
    • (1992) Quant Struct-Activ Rel , vol.11 , pp. 176-184
    • Klopman, G.1
  • 45
    • 33746910590 scopus 로고    scopus 로고
    • A structural analogue approach to the prediction of the octanol-water partition coefficient
    • Sedykh AY, Klopman G. 2006. A structural analogue approach to the prediction of the octanol-water partition coefficient. J Chem Inf Model 46:1598-1603.
    • (2006) J Chem Inf Model , vol.46 , pp. 1598-1603
    • Sedykh, A.Y.1    Klopman, G.2
  • 46
    • 0000627162 scopus 로고    scopus 로고
    • Estimation of partition coefficients of organic compounds: Local database modeling with uniform-length structure descriptors
    • Junghans M, Pretsch E. 1997. Estimation of partition coefficients of organic compounds: Local database modeling with uniform-length structure descriptors. Fresenius J Anal Chem 359:88-92.
    • (1997) Fresenius J Anal Chem , vol.359 , pp. 88-92
    • Junghans, M.1    Pretsch, E.2
  • 47
    • 0033815655 scopus 로고    scopus 로고
    • Estimating logP with atom/fragments and water solubility with log P
    • Meylan WM, Howard PH. 2000. Estimating logP with atom/fragments and water solubility with log P. Perspect Drug Discov Des 19:67-84.
    • (2000) Perspect Drug Discov Des , vol.19 , pp. 67-84
    • Meylan, W.M.1    Howard, P.H.2
  • 48
    • 0036589082 scopus 로고    scopus 로고
    • SLIPPER-2001 - Software for predicting molecular properties on the basis of physicochemical descriptors and structural similarity
    • Raevsky OA, Trepalin SV, Trepalina HP, Gerasimenko VA, Raevskaja OE. 2002. SLIPPER-2001 - Software for predicting molecular properties on the basis of physicochemical descriptors and structural similarity. J Chem Inf Comput Sci 42:540-549.
    • (2002) J Chem Inf Comput Sci , vol.42 , pp. 540-549
    • Raevsky, O.A.1    Trepalin, S.V.2    Trepalina, H.P.3    Gerasimenko, V.A.4    Raevskaja, O.E.5
  • 49
    • 0035226643 scopus 로고    scopus 로고
    • Molecular lipophilicity calculations of chemically heterogeneous chemicals and drugs on the basis of structural similarity and physicochemical parameters
    • Raevsky OA. 2001. Molecular lipophilicity calculations of chemically heterogeneous chemicals and drugs on the basis of structural similarity and physicochemical parameters. SAR QSAR Environ Res 12:367-381.
    • (2001) SAR QSAR Environ Res , vol.12 , pp. 367-381
    • Raevsky, O.A.1
  • 50
    • 0036757804 scopus 로고    scopus 로고
    • Application of associative neural networks for prediction of lipophilicity in ALOGPS 2.1 program
    • Tetko IV, Tanchuk VY. 2002. Application of associative neural networks for prediction of lipophilicity in ALOGPS 2.1 program. J Chem Inf Comput Sci 42:1136-1145.
    • (2002) J Chem Inf Comput Sci , vol.42 , pp. 1136-1145
    • Tetko, I.V.1    Tanchuk, V.Y.2
  • 51
    • 37249091134 scopus 로고    scopus 로고
    • Computation of octanol-water partition coefficients by guiding an additive model with knowledge
    • Cheng T, Zhao Y, Li X, Lin F, Xu Y, Zhang X, Li Y, Wang R, Lai L. 2007. Computation of octanol-water partition coefficients by guiding an additive model with knowledge. J Chem Inf Model 47:2140-2148.
    • (2007) J Chem Inf Model , vol.47 , pp. 2140-2148
    • Cheng, T.1    Zhao, Y.2    Li, X.3    Lin, F.4    Xu, Y.5    Zhang, X.6    Li, Y.7    Wang, R.8    Lai, L.9
  • 52
    • 0030056288 scopus 로고    scopus 로고
    • Improved method for estimating water solubility from octanol water partition coefficient
    • Meylan WM, Howard PH, Boethling RS. 1996. Improved method for estimating water solubility from octanol water partition coefficient. Environ Toxicol Chem 15:100-106.
    • (1996) Environ Toxicol Chem , vol.15 , pp. 100-106
    • Meylan, W.M.1    Howard, P.H.2    Boethling, R.S.3
  • 53
    • 0029585123 scopus 로고
    • Atom/fragment contribution method for estimating octanol-water partition coefficients
    • Meylan WM, Howard PH. 1995. Atom/fragment contribution method for estimating octanol-water partition coefficients. J Pharm Sci 84:83-92.
    • (1995) J Pharm Sci , vol.84 , pp. 83-92
    • Meylan, W.M.1    Howard, P.H.2
  • 54
    • 0016721416 scopus 로고
    • Calculation of hydrophobic constant (log P) from pi and f constants
    • Leo A, Jow PY, Silipo C, Hansch C. 1975. Calculation of hydrophobic constant (log P) from pi and f constants. J Med Chem 18:865-868.
    • (1975) J Med Chem , vol.18 , pp. 865-868
    • Leo, A.1    Jow, P.Y.2    Silipo, C.3    Hansch, C.4
  • 55
    • 0023287031 scopus 로고
    • Some advantages of calculating octanol-water partition coefficients
    • Leo AJ. 1987. Some advantages of calculating octanol-water partition coefficients. J Pharm Sci 76:166-168.
    • (1987) J Pharm Sci , vol.76 , pp. 166-168
    • Leo, A.J.1
  • 56
    • 0026331403 scopus 로고
    • Hydrophobic parameter: Measurement and calculation
    • Leo AJ. 1991. Hydrophobic parameter: Measurement and calculation. Methods Enzymol 202:544-591.
    • (1991) Methods Enzymol , vol.202 , pp. 544-591
    • Leo, A.J.1
  • 57
    • 24544469216 scopus 로고
    • Calculating logPoct from structures
    • Leo AJ. 1993. Calculating logPoct from structures. Chem Rev 93:1281-1306.
    • (1993) Chem Rev , vol.93 , pp. 1281-1306
    • Leo, A.J.1
  • 58
    • 0034108841 scopus 로고    scopus 로고
    • Calculating log P(oct) with no missing fragments; The problem of estimating new interaction parameters
    • Leo AJ, Hoekman D. 2000. Calculating log P(oct) with no missing fragments; The problem of estimating new interaction parameters. Perspect Drug Discov Des 18:19-38.
    • (2000) Perspect Drug Discov Des , vol.18 , pp. 19-38
    • Leo, A.J.1    Hoekman, D.2
  • 60
    • 85031359079 scopus 로고    scopus 로고
    • Limitations of fragmental methods and ACD/LogP training feature
    • Testa B, editor, Laussane, Switzerland, accessed July 1, 2008
    • Petrauskas A, Kolovanov EA. 2000. Limitations of fragmental methods and ACD/LogP training feature. In Testa B, editor LogP 2000 - The second LogP Symposium, Laussane, Switzerland. http://www.acdlabs.com/publish/poster1.html (accessed July 1, 2008).
    • (2000) LogP 2000 - The second LogP Symposium
    • Petrauskas, A.1    Kolovanov, E.A.2
  • 61
    • 0036270224 scopus 로고    scopus 로고
    • Fragmental methods in the design of new compounds. Applications of The Advanced Algorithm Builder
    • Japertas P, Didziapetris R, Petrauskas A. 2002. Fragmental methods in the design of new compounds. Applications of The Advanced Algorithm Builder. Quant Struct-Activ Rel 21:23-37.
    • (2002) Quant Struct-Activ Rel , vol.21 , pp. 23-37
    • Japertas, P.1    Didziapetris, R.2    Petrauskas, A.3
  • 64
    • 0021349111 scopus 로고
    • Molecular structures, perception, autocorrelation descriptor and SAR studies; system of atomic contributions for the calculation of the octanol-water partition coefficient
    • Broto P, Moreau G, Vandycke C. 1984. Molecular structures, perception, autocorrelation descriptor and SAR studies; system of atomic contributions for the calculation of the octanol-water partition coefficient. Eur J Med Chem 19:71-78.
    • (1984) Eur J Med Chem , vol.19 , pp. 71-78
    • Broto, P.1    Moreau, G.2    Vandycke, C.3
  • 65
    • 0028345735 scopus 로고
    • SmilogP: A program for a fast evaluation of theoretical log P from the Smiles code of a molecule
    • Convard T, Dubost JP, Le Solleu H, Kummer E. 1994. SmilogP: A program for a fast evaluation of theoretical log P from the Smiles code of a molecule. Quant Struct-Activ Rel 13:34-37.
    • (1994) Quant Struct-Activ Rel , vol.13 , pp. 34-37
    • Convard, T.1    Dubost, J.P.2    Le Solleu, H.3    Kummer, E.4
  • 66
    • 84988109729 scopus 로고
    • Atomic physicochemical parameters for three-dimensional structure-directed quantitative structure-activity relationships. I. Partition coefficients as a measure of hydrophobicity
    • Ghose AK, Crippen GM. 1986. Atomic physicochemical parameters for three-dimensional structure-directed quantitative structure-activity relationships. I. Partition coefficients as a measure of hydrophobicity. J Comp Chem 7:565-677.
    • (1986) J Comp Chem , vol.7 , pp. 565-677
    • Ghose, A.K.1    Crippen, G.M.2
  • 67
    • 0023289451 scopus 로고
    • Atomic physicochemical parameters for three-dimensional-structure-directed quantitative structure-activity relationships. 2. Modeling dispersive and hydrophobic interactions
    • Ghose AK, Crippen GM. 1987. Atomic physicochemical parameters for three-dimensional-structure-directed quantitative structure-activity relationships. 2. Modeling dispersive and hydrophobic interactions. J Chem Inf Comput Sci 27:21-35.
    • (1987) J Chem Inf Comput Sci , vol.27 , pp. 21-35
    • Ghose, A.K.1    Crippen, G.M.2
  • 68
    • 84911792416 scopus 로고
    • Atomic physicochemical parameters for three-dimensional structure-directed quantitative structure-activity relationships. III. Modeling hydrophobic interactions
    • Ghose AK, Pritchett A, Crippen GM. 1988. Atomic physicochemical parameters for three-dimensional structure-directed quantitative structure-activity relationships. III. Modeling hydrophobic interactions. J Comp Chem 9:80-90.
    • (1988) J Comp Chem , vol.9 , pp. 80-90
    • Ghose, A.K.1    Pritchett, A.2    Crippen, G.M.3
  • 69
    • 0000381930 scopus 로고    scopus 로고
    • Prediction of hydrophobic (lipophilic) properties of small organic molecules using fragmental methods: An analysis of ALOGP and CLOGP methods
    • Ghose AK, Viswanadhan VN, Wendoloski JJ. 1998. Prediction of hydrophobic (lipophilic) properties of small organic molecules using fragmental methods: An analysis of ALOGP and CLOGP methods. J Phys Chem A 102:3762-3772.
    • (1998) J Phys Chem A , vol.102 , pp. 3762-3772
    • Ghose, A.K.1    Viswanadhan, V.N.2    Wendoloski, J.J.3
  • 70
    • 0842281274 scopus 로고    scopus 로고
    • A neural network based prediction of octanol-water partition coefficients using atomic 5 fragmental descriptors
    • Molnar L, Keseru GM, Papp A, Gulyas Z, Darvas F. 2004. A neural network based prediction of octanol-water partition coefficients using atomic 5 fragmental descriptors. Bioorg Med Chem Lett 14:851-853.
    • (2004) Bioorg Med Chem Lett , vol.14 , pp. 851-853
    • Molnar, L.1    Keseru, G.M.2    Papp, A.3    Gulyas, Z.4    Darvas, F.5
  • 71
    • 0000262640 scopus 로고    scopus 로고
    • A new atom-additive method for calculating partition coefficients
    • Wang RX, Fu Y, Lai LH. 1997. A new atom-additive method for calculating partition coefficients. J Chem Inf Comput Sci 37:615-621.
    • (1997) J Chem Inf Comput Sci , vol.37 , pp. 615-621
    • Wang, R.X.1    Fu, Y.2    Lai, L.H.3
  • 72
    • 0033820007 scopus 로고    scopus 로고
    • Calculating partition coefficient by atom-additive method
    • Wang RX, Gao Y, Lai LH. 2000. Calculating partition coefficient by atom-additive method. Perspect Drug Discov Des 19:47-66.
    • (2000) Perspect Drug Discov Des , vol.19 , pp. 47-66
    • Wang, R.X.1    Gao, Y.2    Lai, L.H.3
  • 73
    • 0001509942 scopus 로고    scopus 로고
    • Prediction of physicochemical parameters by atomic contributions
    • Wildman SA, Crippen GM. 1999. Prediction of physicochemical parameters by atomic contributions. J Chem Inf Comput Sci 39:868-873.
    • (1999) J Chem Inf Comput Sci , vol.39 , pp. 868-873
    • Wildman, S.A.1    Crippen, G.M.2
  • 75
    • 84942048668 scopus 로고
    • Octanol-water partition coefficients of simple organic compounds
    • Sangster J. 1989. Octanol-water partition coefficients of simple organic compounds. J Phys Chem Ref Data 18:1111-1229.
    • (1989) J Phys Chem Ref Data , vol.18 , pp. 1111-1229
    • Sangster, J.1
  • 76
    • 34250928962 scopus 로고
    • Volumen un Hydrationwärme der Ionen.
    • Born M. 1920. Volumen un Hydrationwärme der Ionen. Z Phys 1:45-48.
    • (1920) Z Phys , vol.1 , pp. 45-48
    • Born, M.1
  • 77
    • 0034728673 scopus 로고    scopus 로고
    • Prediction of properties from simulations: Free energies of solvation in hexadecane, octanol, and water
    • Duffy EM, Jorgensen WL. 2000. Prediction of properties from simulations: Free energies of solvation in hexadecane, octanol, and water. J Am Chem Soc 122:2878-2888.
    • (2000) J Am Chem Soc , vol.122 , pp. 2878-2888
    • Duffy, E.M.1    Jorgensen, W.L.2
  • 78
    • 33845279234 scopus 로고    scopus 로고
    • Kamlet MJ, Doherty RM, Carr P, Abraham MH, Marcus Y, Taft RW. 1988. Linear solvation energy relationships. 46. An improved equation for correlation and prediction of octanol-water partition coefficients of organic non-electrolytes (including strong hydrogen bond donor solutes). J Phys Chem 92:5244-5255.
    • Kamlet MJ, Doherty RM, Carr P, Abraham MH, Marcus Y, Taft RW. 1988. Linear solvation energy relationships. 46. An improved equation for correlation and prediction of octanol-water partition coefficients of organic non-electrolytes (including strong hydrogen bond donor solutes). J Phys Chem 92:5244-5255.
  • 79
    • 0041573625 scopus 로고    scopus 로고
    • Kamlet MJ, Abboud J-LM, Abraham MH, Taft RW. 1983. Linear solvation energy relationships. 23. A comprehensive collection of the solvatochromic parameters, pi, alpha, and beta, and some methods for simplifying the generalized solvatochromic equation. J Org Chem 48:2877-2887.
    • Kamlet MJ, Abboud J-LM, Abraham MH, Taft RW. 1983. Linear solvation energy relationships. 23. A comprehensive collection of the solvatochromic parameters, pi, alpha, and beta, and some methods for simplifying the generalized solvatochromic equation. J Org Chem 48:2877-2887.
  • 80
    • 12044255753 scopus 로고
    • Scales of solute hydrogen-bonding: Their construction and application to physicochemical and biochemical processes
    • Abraham MH. 1993. Scales of solute hydrogen-bonding: Their construction and application to physicochemical and biochemical processes. Chem Soc Rev 22:73-83.
    • (1993) Chem Soc Rev , vol.22 , pp. 73-83
    • Abraham, M.H.1
  • 81
    • 0027982335 scopus 로고
    • Hydrogen bonding. 32. An analysis of water-octanol and water-alkane partitioning and the delta log P parameter of seiler
    • Abraham MH, Chadha HS, Whiting GS, Mitchell RC. 1994. Hydrogen bonding. 32. An analysis of water-octanol and water-alkane partitioning and the delta log P parameter of seiler. J Pharm Sci 83:1085-1100.
    • (1994) J Pharm Sci , vol.83 , pp. 1085-1100
    • Abraham, M.H.1    Chadha, H.S.2    Whiting, G.S.3    Mitchell, R.C.4
  • 82
    • 0040524262 scopus 로고    scopus 로고
    • Estimation of molecular linear free energy relation descriptors using a group contribution approach
    • Platts JA, Butina D, Abraham MH, Hersey A. 1999. Estimation of molecular linear free energy relation descriptors using a group contribution approach. J Chem Inf Comput Sci 39:835-845.
    • (1999) J Chem Inf Comput Sci , vol.39 , pp. 835-845
    • Platts, J.A.1    Butina, D.2    Abraham, M.H.3    Hersey, A.4
  • 83
    • 0002175587 scopus 로고    scopus 로고
    • Estimation of molecular linear free energy relationship descriptors by a group contribution approach. 2. Prediction of partition coefficients
    • Platts JA, Abraham MH, Butina D, Hersey A. 2000. Estimation of molecular linear free energy relationship descriptors by a group contribution approach. 2. Prediction of partition coefficients. J Chem Inf Comput Sci 40:71-80.
    • (2000) J Chem Inf Comput Sci , vol.40 , pp. 71-80
    • Platts, J.A.1    Abraham, M.H.2    Butina, D.3    Hersey, A.4
  • 84
    • 85031360814 scopus 로고    scopus 로고
    • Absolv program, http://pharma-algorithms.com.
    • Absolv program
  • 85
    • 33750944563 scopus 로고    scopus 로고
    • Prediction of physicochemical properties of organic compounds from 2D molecular structure - Fragment methods vs. LFER models
    • Schüürmann G, Ebert RU, Kühne R. 2006. Prediction of physicochemical properties of organic compounds from 2D molecular structure - Fragment methods vs. LFER models. Chimia 60:691-698.
    • (2006) Chimia , vol.60 , pp. 691-698
    • Schüürmann, G.1    Ebert, R.U.2    Kühne, R.3
  • 86
    • 0000642679 scopus 로고    scopus 로고
    • Quantification of non-covalent interactions on the basis of the thermodynamic hydrogen bond parameters
    • Raevsky OA. 1997. Quantification of non-covalent interactions on the basis of the thermodynamic hydrogen bond parameters. J Phys Org Chem 10:405-413.
    • (1997) J Phys Org Chem , vol.10 , pp. 405-413
    • Raevsky, O.A.1
  • 87
    • 0028328661 scopus 로고
    • Estimation of gas-liquid chromatographic retention times from molecular structure
    • Hilal SH, Carreira LA, Karickhoff SW, Melton CM. 1994. Estimation of gas-liquid chromatographic retention times from molecular structure. J Chromatogr A 662:269-280.
    • (1994) J Chromatogr A , vol.662 , pp. 269-280
    • Hilal, S.H.1    Carreira, L.A.2    Karickhoff, S.W.3    Melton, C.M.4
  • 92
    • 9744242745 scopus 로고    scopus 로고
    • Prediction of the solubility, activity coefficient and liquid/liquid partition coefficient of organic compounds
    • Hilal SH, Karickhoff SW, Carreira LA. 2004. Prediction of the solubility, activity coefficient and liquid/liquid partition coefficient of organic compounds. QSAR Comb Sci 23:709-720.
    • (2004) QSAR Comb Sci , vol.23 , pp. 709-720
    • Hilal, S.H.1    Karickhoff, S.W.2    Carreira, L.A.3
  • 93
    • 0014675079 scopus 로고
    • A molecular orbital description of the partitioning of aromatic compounds between polar and nonpolar phases
    • Rogers KS, Cammarata A. 1969. A molecular orbital description of the partitioning of aromatic compounds between polar and nonpolar phases. Biochim Biophys Acta 193:22-29.
    • (1969) Biochim Biophys Acta , vol.193 , pp. 22-29
    • Rogers, K.S.1    Cammarata, A.2
  • 94
    • 84986431791 scopus 로고
    • Calculation of partition coefficients by the charge density method
    • Klopman G, Iroff LD. 1981. Calculation of partition coefficients by the charge density method. J Comput Chem 2:157-160.
    • (1981) J Comput Chem , vol.2 , pp. 157-160
    • Klopman, G.1    Iroff, L.D.2
  • 95
    • 0024656378 scopus 로고
    • A new method for the estimation of partition coefficient
    • Bodor N, Gabanyi Z, Wong C. 1989. A new method for the estimation of partition coefficient. J Am Chem Soc 111:3783-3786.
    • (1989) J Am Chem Soc , vol.111 , pp. 3783-3786
    • Bodor, N.1    Gabanyi, Z.2    Wong, C.3
  • 96
    • 0026590304 scopus 로고
    • An extended version of a novel method for the estimation of partition coefficients
    • Bodor N, Huang MJ. 1992. An extended version of a novel method for the estimation of partition coefficients. J Pharm Sci 81:272-281.
    • (1992) J Pharm Sci , vol.81 , pp. 272-281
    • Bodor, N.1    Huang, M.J.2
  • 97
    • 0001728108 scopus 로고    scopus 로고
    • Prediction of the n-octanol/water partition coefficient, logP, using a combination of semiempirical MO-calculations and a neural network
    • Breindl A, Beck B, Clark T, Glen RC. 1997. Prediction of the n-octanol/water partition coefficient, logP, using a combination of semiempirical MO-calculations and a neural network. J Mol Model 3:142-155.
    • (1997) J Mol Model , vol.3 , pp. 142-155
    • Breindl, A.1    Beck, B.2    Clark, T.3    Glen, R.C.4
  • 98
    • 0000055756 scopus 로고    scopus 로고
    • QM/NN QSPR models with error estimation: Vapor pressure and Log P
    • Beck B, Breindl A, Clark T. 2000. QM/NN QSPR models with error estimation: Vapor pressure and Log P. J Chem Inf Comput Sci 40:1046-1051.
    • (2000) J Chem Inf Comput Sci , vol.40 , pp. 1046-1051
    • Beck, B.1    Breindl, A.2    Clark, T.3
  • 99
    • 0001590002 scopus 로고    scopus 로고
    • Molecular size based approach to estimate partition properties for organic solutes
    • Bodor N, Buchwald P. 1997. Molecular size based approach to estimate partition properties for organic solutes. J Phys Chem B 101:3404-3412.
    • (1997) J Phys Chem B , vol.101 , pp. 3404-3412
    • Bodor, N.1    Buchwald, P.2
  • 101
    • 0031983823 scopus 로고    scopus 로고
    • Octanol-water partition of nonzwitterionic peptides: Predictive power of amolecular size-based model
    • Buchwald P, Bodor N. 1998. Octanol-water partition of nonzwitterionic peptides: Predictive power of amolecular size-based model. Proteins 30:86-99.
    • (1998) Proteins , vol.30 , pp. 86-99
    • Buchwald, P.1    Bodor, N.2
  • 102
    • 1442354863 scopus 로고    scopus 로고
    • Accurate and efficient generalized born model based on solvent accessibility: Derivation and application for LogP octanol/water prediction and flexible peptide docking
    • Totrov M. 2004. Accurate and efficient generalized born model based on solvent accessibility: Derivation and application for LogP octanol/water prediction and flexible peptide docking. J Comput Chem 25:609-619.
    • (2004) J Comput Chem , vol.25 , pp. 609-619
    • Totrov, M.1
  • 103
    • 0028266406 scopus 로고
    • Comparison of reliability of log P values for drugs calculated by several methods
    • Moriguchi I, Hirono S, Nakagome I, Hirano H. 1994. Comparison of reliability of log P values for drugs calculated by several methods. Chem Pharm Bull 42:976-978.
    • (1994) Chem Pharm Bull , vol.42 , pp. 976-978
    • Moriguchi, I.1    Hirono, S.2    Nakagome, I.3    Hirano, H.4
  • 104
    • 84961980743 scopus 로고
    • COSMO: A new approach to dielectric screening in solvents with explicit expressions for the screening energy and its gradient
    • Klamt A, Schüürmann G. 1993. COSMO: A new approach to dielectric screening in solvents with explicit expressions for the screening energy and its gradient. J Chem Soc Perkin Trans 2:799-805.
    • (1993) J Chem Soc Perkin Trans , vol.2 , pp. 799-805
    • Klamt, A.1    Schüürmann, G.2
  • 105
    • 0036473751 scopus 로고    scopus 로고
    • Fast solvent screening via quantum chemistry: COSMO-RS approach
    • Eckert F, Klamt A. 2002. Fast solvent screening via quantum chemistry: COSMO-RS approach. AIChE J 48:369-385.
    • (2002) AIChE J , vol.48 , pp. 369-385
    • Eckert, F.1    Klamt, A.2
  • 106
    • 0011983257 scopus 로고    scopus 로고
    • COSMO-RS: A novel way from quantum chemistry to free energy, solubility and general QSAR-descriptors for partitioning
    • Höltje H-D, Sippl W, editors, Barcelona: Prous Science S.A. pp
    • Klamt A, Eckert F. 2001. COSMO-RS: A novel way from quantum chemistry to free energy, solubility and general QSAR-descriptors for partitioning. In: Höltje H-D, Sippl W, editors. Rational approaches to drug design. Barcelona: Prous Science S.A. pp 195-205.
    • (2001) Rational approaches to drug design , pp. 195-205
    • Klamt, A.1    Eckert, F.2
  • 107
    • 26944448236 scopus 로고    scopus 로고
    • COSMOfrag: A novel tool for high-throughput ADME property prediction and similarity screening based on quantum chemistry
    • Hornig M, Klamt A. 2005. COSMOfrag: A novel tool for high-throughput ADME property prediction and similarity screening based on quantum chemistry. J Chem Inf Model 45:1169-1177.
    • (2005) J Chem Inf Model , vol.45 , pp. 1169-1177
    • Hornig, M.1    Klamt, A.2
  • 108
    • 85031364557 scopus 로고    scopus 로고
    • The Physical Properties Database PHYSPROP, Syracuse Research Corporation
    • The Physical Properties Database (PHYSPROP), Syracuse Research Corporation.
  • 109
    • 0347419701 scopus 로고    scopus 로고
    • Prediction of water-octanol partition coefficients using theoretical descriptors derived from the molecular surface area and the electrostatic potential
    • Haeberlein M, Brinck T. 1997. Prediction of water-octanol partition coefficients using theoretical descriptors derived from the molecular surface area and the electrostatic potential. J Chem Soc, Perkin Trans 2:289-294.
    • (1997) J Chem Soc, Perkin Trans , vol.2 , pp. 289-294
    • Haeberlein, M.1    Brinck, T.2
  • 110
    • 8644265004 scopus 로고    scopus 로고
    • Analyses of the partition coefficient, log P, using ab initio MO parameter and accessible surface area of solute molecules
    • Chuman H, Mori A, Tanaka H, Yamagami C, Fujita T. 2004. Analyses of the partition coefficient, log P, using ab initio MO parameter and accessible surface area of solute molecules. J Pharm Sci 93:2681-2697.
    • (2004) J Pharm Sci , vol.93 , pp. 2681-2697
    • Chuman, H.1    Mori, A.2    Tanaka, H.3    Yamagami, C.4    Fujita, T.5
  • 111
    • 62849120881 scopus 로고    scopus 로고
    • Long-range order and interactions of macroscopic objects in polar liquids
    • arXiv:cond-mat/0601129
    • Fedichev PO, Men'shikov LI. 2006. Long-range order and interactions of macroscopic objects in polar liquids. arXiv:cond-mat/0601129.
    • (2006)
    • Fedichev, P.O.1    Men'shikov, L.I.2
  • 112
    • 85031364649 scopus 로고    scopus 로고
    • Quantum Pharmaceuticals, Moscow, Russia
    • Quantum Pharmaceuticals, Moscow, Russia.
  • 113
    • 85031353130 scopus 로고    scopus 로고
    • QikProp, Schrödinger, LLC
    • QikProp, Schrödinger, LLC.
  • 114
    • 0037204544 scopus 로고    scopus 로고
    • Prediction of drug solubility from structure
    • Jorgensen WL, Duffy EM. 2002. Prediction of drug solubility from structure. Adv Drug Deliv Rev 54:355-366.
    • (2002) Adv Drug Deliv Rev , vol.54 , pp. 355-366
    • Jorgensen, W.L.1    Duffy, E.M.2
  • 115
    • 0024174413 scopus 로고
    • 3D molecular lipophilicity potential profiles: A new tool in molecular modeling
    • Furet P, Sele A, Cohen NC. 1988. 3D molecular lipophilicity potential profiles: A new tool in molecular modeling. J Mol Graph 6:182-189.
    • (1988) J Mol Graph , vol.6 , pp. 182-189
    • Furet, P.1    Sele, A.2    Cohen, N.C.3
  • 116
    • 0024166782 scopus 로고
    • Estimating and representing hydrophobicity potential
    • Fauchère JL, Quarendon P, Kaetterer L. 1988. Estimating and representing hydrophobicity potential. J Mol Graph 6:203-206.
    • (1988) J Mol Graph , vol.6 , pp. 203-206
    • Fauchère, J.L.1    Quarendon, P.2    Kaetterer, L.3
  • 117
    • 0024572825 scopus 로고
    • Quantitative structure affinity relationships in a series of alpha-2 adrenergic amines using the molecular lipophilicity potential
    • Audry E, Dallet P, Langlois MH, Colleter JC, Dubost JP. 1989. Quantitative structure affinity relationships in a series of alpha-2 adrenergic amines using the molecular lipophilicity potential. Prog Clin Biol Res 291:63-66.
    • (1989) Prog Clin Biol Res , vol.291 , pp. 63-66
    • Audry, E.1    Dallet, P.2    Langlois, M.H.3    Colleter, J.C.4    Dubost, J.P.5
  • 118
    • 0026292147 scopus 로고
    • HINT: A new method of empirical hydrophobic field calculation for CoMFA
    • Kellogg GE, Semus SF, Abraham DJ. 1991. HINT: A new method of empirical hydrophobic field calculation for CoMFA. J Comput-Aided Mol Des 5:454-552.
    • (1991) J Comput-Aided Mol Des , vol.5 , pp. 454-552
    • Kellogg, G.E.1    Semus, S.F.2    Abraham, D.J.3
  • 119
    • 0343517556 scopus 로고    scopus 로고
    • Hydrophobicity: Is Log P(o/w) more than the sum of its parts?
    • Kellogg GE, Abraham DJ. 2000. Hydrophobicity: Is Log P(o/w) more than the sum of its parts? Eur J Med Chem 35:651-661.
    • (2000) Eur J Med Chem , vol.35 , pp. 651-661
    • Kellogg, G.E.1    Abraham, D.J.2
  • 120
    • 0035055493 scopus 로고    scopus 로고
    • Very empirical treatment of solvation and entropy: A force field derived from Log P-o/w
    • Kellogg GE, Burnett JC, Abraham DJ. 2001. Very empirical treatment of solvation and entropy: A force field derived from Log P-o/w. J Comput-Aided Mol Des 15:381-393.
    • (2001) J Comput-Aided Mol Des , vol.15 , pp. 381-393
    • Kellogg, G.E.1    Burnett, J.C.2    Abraham, D.J.3
  • 121
    • 0023465103 scopus 로고
    • Extension of the fragment method to calculate amino acid zwitterion and side chain partition coefficients
    • Abraham DJ, Leo AJ. 1987. Extension of the fragment method to calculate amino acid zwitterion and side chain partition coefficients. Proteins 2:130-152.
    • (1987) Proteins , vol.2 , pp. 130-152
    • Abraham, D.J.1    Leo, A.J.2
  • 122
    • 33645106609 scopus 로고    scopus 로고
    • Mapping the energetics of water-protein and water-ligand interactions with the "natural" HINT forcefield: Predictive tools for characterizing the roles of water in biomolecules
    • Amadasi A, Spyrakis F, Cozzini P, Abraham DJ, Kellogg GE, Mozzarelli A. 2006. Mapping the energetics of water-protein and water-ligand interactions with the "natural" HINT forcefield: Predictive tools for characterizing the roles of water in biomolecules. J Mol Biol 358:289-309.
    • (2006) J Mol Biol , vol.358 , pp. 289-309
    • Amadasi, A.1    Spyrakis, F.2    Cozzini, P.3    Abraham, D.J.4    Kellogg, G.E.5    Mozzarelli, A.6
  • 123
    • 0028411658 scopus 로고
    • Molecular lipophilicity potential, a tool in 3D QSAR: Method and applications
    • Gaillard P, Carrupt PA, Testa B, Boudon A. 1994. Molecular lipophilicity potential, a tool in 3D QSAR: Method and applications. J Comput-Aided Mol Des 8:83-96.
    • (1994) J Comput-Aided Mol Des , vol.8 , pp. 83-96
    • Gaillard, P.1    Carrupt, P.A.2    Testa, B.3    Boudon, A.4
  • 125
    • 0036284090 scopus 로고    scopus 로고
    • VEGA: A versatile program to convert, handle and visualize molecular structure on Windows-based PCs
    • Pedretti A, Villa L, Vistoli G. 2002. VEGA: A versatile program to convert, handle and visualize molecular structure on Windows-based PCs. J Mol Graph Model 21:47-49.
    • (2002) J Mol Graph Model , vol.21 , pp. 47-49
    • Pedretti, A.1    Villa, L.2    Vistoli, G.3
  • 126
    • 0037572417 scopus 로고    scopus 로고
    • Determination of conformer-specific partition coefficients in octanol/water systems
    • Kraszni M, Banyai I, Noszal B. 2003. Determination of conformer-specific partition coefficients in octanol/water systems. JMed Chem46:2241-2245.
    • (2003) JMed Chem46 , pp. 2241-2245
    • Kraszni, M.1    Banyai, I.2    Noszal, B.3
  • 127
    • 0029348604 scopus 로고
    • Calculation of hydrophobic parameters directly from three-dimensional structures using comparative molecular field analysis
    • Kim KH. 1995. Calculation of hydrophobic parameters directly from three-dimensional structures using comparative molecular field analysis. J Comput-Aided Mol Des 9:308-318.
    • (1995) J Comput-Aided Mol Des , vol.9 , pp. 308-318
    • Kim, K.H.1
  • 128
    • 0028023583 scopus 로고
    • A three dimensional technique for the calculation of octanol-water partition coefficients
    • Waller CL. 1994. A three dimensional technique for the calculation of octanol-water partition coefficients. Quant Struct-Activ Rel 13:172-176.
    • (1994) Quant Struct-Activ Rel , vol.13 , pp. 172-176
    • Waller, C.L.1
  • 129
    • 18244365115 scopus 로고    scopus 로고
    • Calculating virtual logP in the alkane/water system (log P(N)(alk)) and its derived parameters deltalog P(N)(oct-alk) and log D(pH)(alk)
    • Caron G, Ermondi G. 2005. Calculating virtual logP in the alkane/water system (log P(N)(alk)) and its derived parameters deltalog P(N)(oct-alk) and log D(pH)(alk). J Med Chem 48:3269-3279.
    • (2005) J Med Chem , vol.48 , pp. 3269-3279
    • Caron, G.1    Ermondi, G.2
  • 130
    • 0033800498 scopus 로고    scopus 로고
    • VolSurf: A new tool for the pharmacokinetic optimization of lead compounds
    • Cruciani G, Pastor M, Guba W. 2000. VolSurf: A new tool for the pharmacokinetic optimization of lead compounds. Eur J Pharm Sci 11:S29-S39.
    • (2000) Eur J Pharm Sci , vol.11
    • Cruciani, G.1    Pastor, M.2    Guba, W.3
  • 132
    • 85031357297 scopus 로고    scopus 로고
    • ADMET Predictor(TM) version 2.3.0, Simulations Plus, Inc
    • ADMET Predictor(TM) version 2.3.0, Simulations Plus, Inc.
  • 135
    • 0026734269 scopus 로고
    • Prediction of octanol water partition coefficient (Kow) using algorithmically-derived variables
    • Niemi GJ, Basak SC, Veith GD, Grunwald GD. 1992. Prediction of octanol water partition coefficient (Kow) using algorithmically-derived variables. Environ Toxicol Chem 11:893-900.
    • (1992) Environ Toxicol Chem , vol.11 , pp. 893-900
    • Niemi, G.J.1    Basak, S.C.2    Veith, G.D.3    Grunwald, G.D.4
  • 136
    • 0030884948 scopus 로고    scopus 로고
    • Computer-assisted IR spectra prediction - Linked similarity searches for structures and spectra
    • Baumann K, Clerc JT. 1997. Computer-assisted IR spectra prediction - Linked similarity searches for structures and spectra. Anal Chim Acta 348:327-343.
    • (1997) Anal Chim Acta , vol.348 , pp. 327-343
    • Baumann, K.1    Clerc, J.T.2
  • 137
    • 0028466540 scopus 로고
    • Comparison of automatic three-dimensional model builders using 639 X-ray structures
    • Sadowski J, Gasteiger J, Klebe G. 1994. Comparison of automatic three-dimensional model builders using 639 X-ray structures. J Chem Inf Comput Sci 34:1000-1008.
    • (1994) J Chem Inf Comput Sci , vol.34 , pp. 1000-1008
    • Sadowski, J.1    Gasteiger, J.2    Klebe, G.3
  • 139
    • 0029404240 scopus 로고
    • Electrotopological state indices for atom types - A novel combination of electronic, topological, and valence state information
    • Hall LH, Kier LB. 1995. Electrotopological state indices for atom types - A novel combination of electronic, topological, and valence state information. J Chem Inf Comput Sci 35:1039-1045.
    • (1995) J Chem Inf Comput Sci , vol.35 , pp. 1039-1045
    • Hall, L.H.1    Kier, L.B.2
  • 140
    • 85031348417 scopus 로고    scopus 로고
    • High quality of property predictions by Molconn-Z and artificial neural network modeling
    • Parham ME, Hall LH, Kier LB. 2000. High quality of property predictions by Molconn-Z and artificial neural network modeling. Abstr Pap Am Chem Soc 220:U288-U288.
    • (2000) Abstr Pap Am Chem Soc , vol.220
    • Parham, M.E.1    Hall, L.H.2    Kier, L.B.3
  • 141
    • 0030278197 scopus 로고    scopus 로고
    • Assessment of noctanol/water partition coefficient: When is the assessment reliable?
    • Gombar VK, Enslein K. 1996. Assessment of noctanol/water partition coefficient: When is the assessment reliable? J Chem Inf Comput Sci 36:1127-1134.
    • (1996) J Chem Inf Comput Sci , vol.36 , pp. 1127-1134
    • Gombar, V.K.1    Enslein, K.2
  • 142
    • 0032619322 scopus 로고    scopus 로고
    • Reliable assessment of logP of compounds of pharmaceutical relevance
    • Gombar VK. 1999. Reliable assessment of logP of compounds of pharmaceutical relevance. SAR QSAR Environ Res 10:371-380.
    • (1999) SAR QSAR Environ Res , vol.10 , pp. 371-380
    • Gombar, V.K.1
  • 143
    • 0000691934 scopus 로고    scopus 로고
    • Neural network modeling for estimation of partition coefficient based on atom-type electrotopological state indices
    • Huuskonen JJ, Livingstone DJ, Tetko IV. 2000. Neural network modeling for estimation of partition coefficient based on atom-type electrotopological state indices. J Chem Inf Comput Sci 40:947-955.
    • (2000) J Chem Inf Comput Sci , vol.40 , pp. 947-955
    • Huuskonen, J.J.1    Livingstone, D.J.2    Tetko, I.V.3
  • 144
    • 0033046916 scopus 로고    scopus 로고
    • Prediction of partition coefficient based on atom-type electrotopological state indices
    • Huuskonen JJ, Villa AE, Tetko IV. 1999. Prediction of partition coefficient based on atom-type electrotopological state indices. J Pharm Sci 88:229-233.
    • (1999) J Pharm Sci , vol.88 , pp. 229-233
    • Huuskonen, J.J.1    Villa, A.E.2    Tetko, I.V.3
  • 145
    • 0035470269 scopus 로고    scopus 로고
    • Prediction of n-octanol/water partition coefficients from PHYSPROP database using artificial neural networks and E-state indices
    • Tetko IV, Tanchuk VY, Villa AE. 2001. Prediction of n-octanol/water partition coefficients from PHYSPROP database using artificial neural networks and E-state indices. J Chem Inf Comput Sci 41:1407-1421.
    • (2001) J Chem Inf Comput Sci , vol.41 , pp. 1407-1421
    • Tetko, I.V.1    Tanchuk, V.Y.2    Villa, A.E.3
  • 146
    • 7444258512 scopus 로고    scopus 로고
    • Application of ALOGPS 2.1 to predict log D distribution coefficient for Pfizer proprietary compounds
    • Tetko IV, Poda GI. 2004. Application of ALOGPS 2.1 to predict log D distribution coefficient for Pfizer proprietary compounds. J Med Chem 47:5601-5604.
    • (2004) J Med Chem , vol.47 , pp. 5601-5604
    • Tetko, I.V.1    Poda, G.I.2
  • 147
    • 10644293897 scopus 로고    scopus 로고
    • Application of ALOGPS to predict 1-octanol/water distribution coefficients, logP, and logD, of AstraZeneca inhouse database
    • Tetko IV, Bruneau P. 2004. Application of ALOGPS to predict 1-octanol/water distribution coefficients, logP, and logD, of AstraZeneca inhouse database. J Pharm Sci 93:3103-3110.
    • (2004) J Pharm Sci , vol.93 , pp. 3103-3110
    • Tetko, I.V.1    Bruneau, P.2
  • 148
    • 0034751673 scopus 로고    scopus 로고
    • Simultaneous prediction of aqueous solubility and octanol/water partition coefficient based on descriptors derived from molecular structure
    • Livingstone DJ, Ford MG, Huuskonen JJ, Salt DW. 2001. Simultaneous prediction of aqueous solubility and octanol/water partition coefficient based on descriptors derived from molecular structure. J Comput-Aided Mol Des 15:741-752.
    • (2001) J Comput-Aided Mol Des , vol.15 , pp. 741-752
    • Livingstone, D.J.1    Ford, M.G.2    Huuskonen, J.J.3    Salt, D.W.4
  • 149
    • 85031347352 scopus 로고    scopus 로고
    • VLOGP (v 3.1) model from the Toxicity Prediction (TOPKAT) protocol in Discovery Studio 1.7.
    • VLOGP (v 3.1) model from the Toxicity Prediction (TOPKAT) protocol in Discovery Studio 1.7.
  • 150
    • 0036557849 scopus 로고    scopus 로고
    • Neural network studies. 4. Introduction to associative neural networks
    • Tetko IV. 2002. Neural network studies. 4. Introduction to associative neural networks. J Chem Inf Comput Sci 42:717-728.
    • (2002) J Chem Inf Comput Sci , vol.42 , pp. 717-728
    • Tetko, I.V.1
  • 151
    • 0036784472 scopus 로고    scopus 로고
    • Associative neural network
    • Tetko IV. 2002. Associative neural network. Neural Process Lett 16:187-199.
    • (2002) Neural Process Lett , vol.16 , pp. 187-199
    • Tetko, I.V.1
  • 152
    • 44649190610 scopus 로고    scopus 로고
    • Calculation of lipophilicity for Pt(II) complexes: Experimental comparison of several methods
    • Tetko IV, Jaroszewicz I, Platts JA, Kuduk-Jaworska J. 2008. Calculation of lipophilicity for Pt(II) complexes: Experimental comparison of several methods. Biochem 102:1424-1437.
    • (2008) Biochem , vol.102 , pp. 1424-1437
    • Tetko, I.V.1    Jaroszewicz, I.2    Platts, J.A.3    Kuduk-Jaworska, J.4
  • 154
    • 0038443475 scopus 로고    scopus 로고
    • Substructure versus whole-molecule approaches for calculating log P
    • Mannhold R, Petrauskas A. 2003. Substructure versus whole-molecule approaches for calculating log P. QSAR Comb Sci 22:466-475.
    • (2003) QSAR Comb Sci , vol.22 , pp. 466-475
    • Mannhold, R.1    Petrauskas, A.2
  • 155
    • 0035055492 scopus 로고    scopus 로고
    • Substructure and whole molecule approaches for calculating log P
    • Mannhold R, van de Waterbeemd H. 2001. Substructure and whole molecule approaches for calculating log P. J Comput-Aided Mol Des 15:337-354.
    • (2001) J Comput-Aided Mol Des , vol.15 , pp. 337-354
    • Mannhold, R.1    van de Waterbeemd, H.2
  • 156
    • 0027325507 scopus 로고
    • On the reliability of calculated log P-values: Rekker, Hansch/Leo and Suzuki approach
    • Rekker RF, ter Laak AM, Mannhold M. 1993. On the reliability of calculated log P-values: Rekker, Hansch/Leo and Suzuki approach. Quant Struct-Activ Rel 12:152-157.
    • (1993) Quant Struct-Activ Rel , vol.12 , pp. 152-157
    • Rekker, R.F.1    ter Laak, A.M.2    Mannhold, M.3
  • 157
    • 0025339490 scopus 로고    scopus 로고
    • Mannhold R, Dross KP, Rekker RF. 1990. Drug lipophilicity in QSAR practice: I. A. comparison of experimental with calculative approaches. Quant Struct-Activ Rel 9:21-28.
    • Mannhold R, Dross KP, Rekker RF. 1990. Drug lipophilicity in QSAR practice: I. A. comparison of experimental with calculative approaches. Quant Struct-Activ Rel 9:21-28.
  • 158
    • 0036383632 scopus 로고    scopus 로고
    • Reliability of logP predictions based on calculated molecular descriptors: A critical review
    • Eros D, Kovesdi I, Orfi L, Takacs-Novak K, Acsady G, Keri G. 2002. Reliability of logP predictions based on calculated molecular descriptors: A critical review. Curr Med Chem 9:1819-1829.
    • (2002) Curr Med Chem , vol.9 , pp. 1819-1829
    • Eros, D.1    Kovesdi, I.2    Orfi, L.3    Takacs-Novak, K.4    Acsady, G.5    Keri, G.6
  • 160
    • 84890966006 scopus 로고    scopus 로고
    • Tetko IV, Livingstone DJ. 2006. Rule-based systems to predict lipophilicity. In: Testa B, van de Waterbeemd H, editors. Comprehensive medicinal chemistry II: In silico tools in ADMET, ed. Amsterdam: Elsevier. pp 649-668.
    • Tetko IV, Livingstone DJ. 2006. Rule-based systems to predict lipophilicity. In: Testa B, van de Waterbeemd H, editors. Comprehensive medicinal chemistry II: In silico tools in ADMET, ed. Amsterdam: Elsevier. pp 649-668.
  • 161
    • 85031358023 scopus 로고    scopus 로고
    • Tetko IV, Poda GI. 2007. Prediction of Log P with property-based methods. In: Mannhold R, editor. Molecular drug properties - Measurement and prediction. Methods and principles in medicinal chemistry, 37. Weinheim: Wiley-VCH. pp 381-406.
    • Tetko IV, Poda GI. 2007. Prediction of Log P with property-based methods. In: Mannhold R, editor. Molecular drug properties - Measurement and prediction. Methods and principles in medicinal chemistry, Vol. 37. Weinheim: Wiley-VCH. pp 381-406.
  • 162
    • 85031363221 scopus 로고    scopus 로고
    • Avdeef A. 2003. Absorption and drug development. solubility, permeability and charge state, ed. Hoboken, NJ: Wiley-Interscience. p 312.
    • Avdeef A. 2003. Absorption and drug development. solubility, permeability and charge state, ed. Hoboken, NJ: Wiley-Interscience. p 312.
  • 163
    • 85031346088 scopus 로고    scopus 로고
    • Lombardo F, Faller B, Shalaeva M, Tetko I, Tilton S. 2007. The good, the bad and the ugly of distribution coefficients: Current status, views and outlook. In: Mannhold R, editor. Molecular drug properties - Measurement and prediction. Methods and principles in medicinal chemistry, 37. Weinheim: Wiley-VCH. pp 407-437.
    • Lombardo F, Faller B, Shalaeva M, Tetko I, Tilton S. 2007. The good, the bad and the ugly of distribution coefficients: Current status, views and outlook. In: Mannhold R, editor. Molecular drug properties - Measurement and prediction. Methods and principles in medicinal chemistry, Vol. 37. Weinheim: Wiley-VCH. pp 407-437.
  • 164
    • 85031364805 scopus 로고    scopus 로고
    • ICM, Internal Coordinate Mechanics software, MolSoft LLC
    • ICM, (Internal Coordinate Mechanics) software, MolSoft LLC.
  • 166
    • 0035526162 scopus 로고    scopus 로고
    • Estimation of aqueous solubility of chemical compounds using E-state indices
    • Tetko IV, Tanchuk VY, Kasheva TN, Villa AE. 2001. Estimation of aqueous solubility of chemical compounds using E-state indices. J Chem Inf Comput Sci 41:1488-1493.
    • (2001) J Chem Inf Comput Sci , vol.41 , pp. 1488-1493
    • Tetko, I.V.1    Tanchuk, V.Y.2    Kasheva, T.N.3    Villa, A.E.4
  • 167
    • 54249125512 scopus 로고    scopus 로고
    • Critical assessment of QSAR Models to predict environmental toxicity against Tetrahymena pyriformis: Focusing on applicability domain and overfitting by variable selection
    • in press
    • Tetko IV, Sushko I, Pandey AK, Tropsha A, Zhu H, Papa E, Öberg T, Todeschini R, Fourches D, Varnek A. 2008. Critical assessment of QSAR Models to predict environmental toxicity against Tetrahymena pyriformis: Focusing on applicability domain and overfitting by variable selection. J Chem Inf Model (in press).
    • (2008) J Chem Inf Model
    • Tetko, I.V.1    Sushko, I.2    Pandey, A.K.3    Tropsha, A.4    Zhu, H.5    Papa, E.6    Öberg, T.7    Todeschini, R.8    Fourches, D.9    Varnek, A.10
  • 168
    • 0035440324 scopus 로고    scopus 로고
    • Correlation and prediction of a large blood-brain distribution data set - An LFER study
    • Platts JA, Abraham MH, Zhao YH, Hersey A, Ijaz L, Butina D. 2001. Correlation and prediction of a large blood-brain distribution data set - An LFER study. Eur J Med Chem 36:719-730.
    • (2001) Eur J Med Chem , vol.36 , pp. 719-730
    • Platts, J.A.1    Abraham, M.H.2    Zhao, Y.H.3    Hersey, A.4    Ijaz, L.5    Butina, D.6


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