Nuclear export of proteins and RNA

Plant Cell Monographs

Volumn 14, Issue , 2009, Pages 55-77

  Merkle, Thomas ^a  

^a BIELEFELD UNIVERSITY   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 57849137540     PISSN: 18611370     EISSN: 18611362     Source Type: Book Series    
DOI: 10.1007/978-3-540-71058-5_4     Document Type: Article

References (102)

1. Bai MY, Zhang LY, Gampala SS, Zhu SW, Song WY, Chong K, Wang ZY (2007) Functions of OsBZRl and 14-3-3 proteins in brassinosteroid signaling in rice. Proc Natl Acad Sci USA 104:13839-13844
2. Belostotsky BA (2003) Unexpected complexity of poly(A) binding protein gene families in flowering plants: three conserved lineages that are at least 200 million years old and possible auto-and cross-regulation. Genetics 163:311-319
3. Bezerra IC, Michaels SD, Schomburg FM, Amasino RM (2004) Lesions in the mRNA cap-binding gene ABA HYPERSENSITIVE 1 suppress FRIGIDA-mediated delayed flowering in Arabidopsis. Plant J 40:112-119
4. Bohnsack MT, Regener K, Schwappach B, Saffrich R, Paraskeva E, Hartmann E, Görlich D (2002) Exp5 exports eEFIA via tRNA from nuclei and synergizes with other transport pathways to confine translation to the cytoplasm. EMBO J 21:6205-6215
5. Bohnsack MT, Czaplinski K, Gorlich D (2004) Exportin 5 is a RanGTP-dependent dsRNA-binding protein that mediates nuclear export of pre-miRNAs. RNA 10:185-191
6. Bollman KM, Aukerman MJ, Park M-Y, Hunter C, Berardini TZ, Poethig RS (2003) HASTY, the Arabidopsis orthologs of exportin 5/MSN5, regulates phase change and morphogenesis. Development 130:1493-1504
7. Bravo J, Aguilar-Henonin L, Olmedo G, Guzmán P (2005) Four distinct classes of proteins as minteraction partners of the PABC domain of Arabidopsis thaliana poly(A)-binding proteins. Mol Genet Genomics 272:651-665
8. Calado A, Treichel N, Müller E-C, Otto A, Kutay U (2002) Exportin-5-mediated nuclear export of eukaryotic elongation factor 1A and tRNA. EMBO J 21:6216-6224
9. Carvalho MF, Turgeon R, Lazarowitz SG (2006) The geminivirus nuclear shuttle protein NSP inhibits the activity of AtNSI, a vascular-expressed Arabidopsis acetyltransferase reglated with the sink-to-source transition. Plant Physiol 140:1317-1330
10. Chekanova JA, Belostotsky DA (2003) Evidence that poly(A) binding protein has an evolutionar-ily conserved function in facilitating mRNA biogenesis and export. RNA 9:1476-1490
11. Chekanova JA, Shaw RJ, Belostotsky DA (2001) Analysis of an essential requirement for the poly(A) binding protein function using cross-species complementation. Curr Biol 11:1207-1214
12. Cole CN, Scarcelli JJ (2006) Transport of messenger RNA from the nucleus to the cytoplasm. Curr Opin Cell Biol 18:299-306
13. Cornelia P, Pontvianne F, Lahmy S, Vignols F, Barbezier N, DeBures A, Jobet E, Brugidou E, Echeverria M, Saez-Vasquez J (2007) Characterization of a ribonuclease III-like protein required for the cleavage of the pre-rRNA in the 3 ETS in Arabidopsis. Nucleic Acids Res 36:1163-1175
14. Conti E, Izaurralde E (2001) Nucleocytoplasmic transport enters the atomic age. Curr Opin Cell Biol 13:310-319
15. Cullen BR (2003) Nuclear RNA export. J Cell Sci 116:587-597
16. Dahlberg JE, Lund E (2004) Does protein synthesis occur in the nucleus? Curr Opin Cell Biol 16:335-338
17. Dong A, Liu Z, Yu F, Li Z, Cao K, Shen WH (2005) Interacting proteins and differences in nuclear transport reveal specific functions for the NAP1 family proteins in plants. Plant Physiol 138:1446-1456
18. Dong CH, Hu X, Tang W, Zheng X, Kim YS, Lee BH, Zhu JK (2006) A putative Arabidopsis nucleoporin, AtNUP160, is critical for RNA export and required for plant tolerance to cold stress. Mol Cell Biol 26:9533-9543
19. Fribourg S, Braun IC, Izaurralde E, Conti E (2001) Structural basis for the recognition of a nucleoporin FG repeat by the NTF2-like domain of the TAP/pl5 mRNA nuclear export receptor. Mol Cell 8:645-656
20. Gampala SS, Kim TW, He JX, Tang W, Deng Z, Bai MY, Guan S, Lalonde S, Sun Y, Gendron JM, Chen H, Shibagaki N, Ferl RJ, Ehrhardt D, Chong K, Burlingame AL, Wang ZY (2007) An essential role for 14-3-3 proteins in brassinosteroid signal transduction in Arabidopsis. Dev Cell 13:177-89
21. Gong Z, Lee H, Xiong L, Jagendorf A, Stevenson B, Zhu JK (2002) RNA helicase-like protein as an early regulator of transcription factors for plant chilling and freezing tolerance. Proc Natl Acad Sci USA 99:11507-11512
22. Gong Z, Dong CH, Lee H, Zhu J, Xiong L, Gong D, Stevenson B, Zhu JK (2005) A DEAD box RNA helicase is essential for mRNA export and important for development and stress responses in Arabidopsis. Plant Cell 17:256-267
23. Gorlich D, Kutay U (1999) Transport between the cell nucleus and the cytoplasm. Annu Rev Cell Biol 15:607-660
24. Crasser M, Lentz A, Lichota J, Merkle T, Grasser KD (2006) The Arabidopsis genome encodes structurally and functionally diverse HMGB-type proteins. J Mol Biol 358:654-664
25. Grosshans H, Deinert K, Hurt E, Simos G (2001) Biogenesis of the signal recognition particle (SRP) involves import of SRP proteins into the nucleus, assembly with the SRP-RNA, and Xpolp-mediated export. J Cell Biol 153:745-762
26. Gwizdek C, Ossareh-Nazari B, Brownawell AM, Doglio A, Bertrand E, Macara IG, Dargemont C (2003) Exportin-5 mediates nuclear export of minihelix-containing RNAs. J Biol Chem 278:5505-5508
27. Gwizdek C, Ossareh-Nazari B, Brownawell AM, Evers S, Macara IG, Dargemont C (2004) Minihelix-containing RNAs mediate exportin-5-dependent nuclear export of the double-stranded RNA-binding protein ILF3. J Biol Chem 279:884-891
28. Haasen D, Köhler C, Neuhaus G, Merkle T (1999) Nuclear export of proteins in plants: AtXPOl is the export receptor for leucine-rich nuclear export signals in Arabidopsis thaliana. Plant J 20:695-705
29. Haasen D, Merkle T (2002) Characterization of an Arabidopsis homologue of the nuclear export receptor CAS by its interaction with Importin alpha. Plant Biol 4:432-439
30. Heerklotz D, Döring P, Bonzelius F, Winkelhaus S, Nover L (2001) The balance of nuclear import and export determines the intracellular distribution and function of tomato heat stress trasn-cription factor HsfA2. Mol Cell Biol 21:1759-1768
31. Hernandez-Pinzon I, Yelina NE, Schwach F, Studholme DJ, Baulcombe D, Dalmay T (2007) SDE5, the putative homologue of a human mRNA export factor, is required for transgene silencing and accumulation of trans-acting endogenous siRNA. Plant J 50:140-148
32. Herald A, Suyama M, Rodrigues JP, Braun IC, Kutay U, Carmo-Fonseca M, Bork P, Izaurralde E (2000) TAP (NXF1) belongs to a multigene family of putative RNA export factors with a conserved modular architecture. Mol Cell Biol 20:8996-9008
33. Hood JK, Silver PA (1998) Cselp is required for export of Srplp/importin-a from the nucleus in Saccharomyces cerevisiae. J Biol Chem 273:35142-35146
34. Hugouvieux V, Murata Y, Young JJ, Kwak JM, Mackesy DZ, Schroeder JI (2002) Localization, ion channel regulation, and genetic interactions during abscisic acid signaling of the nuclear mRNA cap-binding protein, ABH1. Plant Physiol 130:1276-1287
35. Hunter CA, Aukerman MJ, Sun H, Fokina M, Poethig RS (2003) PAUSED encodes the Arabidopsis Exportin-t orthologs. Plant Physiol 132:2135-2143
36. Igarashi D, Ishida S, Fukazawa J, Takahashi Y (2001) 14-3-3 proteins regulate intracellular localization of the bZIP transcriptional activator RSG. Plant Cell 13:2483-2497
37. Ishida S, Fukazawa J, Yuasa T, Takahashi Y (2004) Involvement of 14-3-3 signaling protein binding in the functional regulation of the transcriptional activator REPRESSION OF SHOOT GROWTH by gibberellins. Plant Cell 16:2641-2651
38. Izaurralde E, Kutay U, von Kobbe C, Mattaj IW, Görlich D (1997) The asymmetric distribution of the constituents of the Ran system is essential for transport into and out of the nucleus. EMBO J 16:6535-6547
39. Jacob Y, Mongkolsiriwatana C, Veley KM, Kim SY, Michaels SD (2007) The nuclear pore protein AtTPR is required for RNA homeostasis, flowering time, and auxin signaling. Plant Physiol. 144:1383-1890
40. Jacoby MJ, Weinl C, Pusch S, Kuijt SJH, Merkle T, Dissmeyer N, Schnittger A (2006) Analysis of the subcellular localization, function, and proteolytic control of the Arabidopsis cyclin-dependent kinase inhibitor ICK1/KRP1. Plant Physiol 141:1293-1305
41. Jiang CJ, Imamoto N, Matsuki R, Yoneda Y, Yamamoto N (1998) In vitro characterization of rice importin beta 1: molecular interaction with nuclear transport factors and mediation of nuclear protein import. FEBS Lett 437:127-130
42. Johnson AW, Lund E, Dahlberg J (2002) Nuclear export of ribosomal subunits. Trends Biochem Sci 27:580-585
43. Jones-Rhoades MW, Bartel DP, Bartel B (2006) MicroRNAs and their regulatory roles in plants. Annu Rev Plant Biol 57:19-53
44. Kaffman A, O'Shea EK (1999) Regulation of nuclear localisation: a key to a door. Annu Rev Cell Dev Biol 15:291-339
45. Kaminaka H, Näke C, Epple P, Dittgen J, Schütze K, Chaban C, Holt III BF, Merkle T, Schiifer E, Harter K, Dangl JL (2006) bZIPlO-LSDl antagonism modulates basal defense and cell death in Arabidopsis following infection. EMBO J 25:4400-4411
46. Katahira J, Straesser K, Saiwaki T, Yoneda Y, Hurt E (2002) Complex formation between TAP and pi 5 affects binding to FG-repeat nucleoporins and nucleocytoplasmic shuttling. J Biol Chem 277:9242-9246
47. Kmieciak M, Simpson CG, Lewandowska D, Brown JW, Jarmolowski A (2002) Cloning and characterization of two subunits of Arabidopsis thaliana nuclear cap-binding complex. Gene 283:171-183
48. Kudo N, Matsumori N, Taoka H, Fujiwara D, Schreiner EP, Wolff B, Yoshida M, Horinouchi S (1999) Leptomycin B inactivates CRMl/Exportin 1 by covalent modification at a cysteine residue in the conserved central region. Proc Natl Acad Sci USA 96:9112-9117
49. Künzler M, Hurt EC (1998) Csel p functions as the nuclear export receptor for importin a in yeast. FEBS Lett 433:185-190
50. Kutay U, Bischoff FR, Kostka S, Kraft R, Görlich D (1997) Export of importin a from the nucleus is mediated by a specific nuclear transport factor. Cell 90:1061-1071
51. Levesque L, Bor Y-C, Matzat LH, Jin L, Berberoglu S, Rekosh D, Hammarskjöld M-L, Paschal MB (2006) Mutations in TAP uncouple RNA export activity from translocation through the nuclear pore complex. Mol Biol Cell 17:931-943
52. Li J, Chen X (2003) PAUSED, a putative Exportin-t, acts pleiotropically in Arabidopsis development but is dispensable for viability. Plant Physiol 132:1913-1924
53. Link D, Schmidlin L, Schirmer A, Klein E, Erhardt M, Geldreich A, Lemaire O, Gilmer D (2005) Functional characterization of the beet necrotic yellow vein virus RNA-5-encoded p26 protein: evidence for structural pathogenicity determinants. J Gen Virol 86:2115-2125
54. Lipowsky G, Bischoff FR, Schwarzmaier P, Kraft R, Kostka S, Hartmann E, Kutay U, Görlich D (2000) Exportin 4: a mediator of a novel nuclear export pathway in higher eukaryotes. EMBO J 19:4362-4371
55. Lund E, Güttinger S, Calado A, Dahlberg JE, Kutay U (2004) Nuclear export of microRNA precursors. Science 303:95-98
56. Mallory AC, Reinhart BJ, Jones-Rhoades MW, Tang G, Zamore PD, Barton MK, Bartel DP (2004) MicroRNA control of PHABULOSA in leaf development: importance of pairing to the microRNA 5 region. EMBO J 23:3356-3364
57. Martini J, Schmied K, Palmisano R, Toensing K, Anselmetti D, Merkle T (2007) Multifocal two-photon laser scanning microscopy combined with photo-activatable GFP for in vivo monitoring intracellular protein dynamics in real time. J Struct Biol 158:401-409
58. Merkle T (2001) Nuclear import and export of proteins in plants: a tool for the regulation of signalling. Planta 213:499-517
59. Merkle T (2003) Nucleo-cytoplasmic partitioning in plants: implications for the regulation of environmental and developmental signaling. Curr Genet 44:231-260
60. Mingot J-M, Kostka S, Kraft R, Hartmann E, Görlich D (2001) Importin 13: a novel mediator of nuclear import and nuclear export. EMBO J 20:3685-3694
61. Mingot J-M, Bohnsack MT, Jäckie U, Görlich D (2004) Exportin 7 defines a novel general nuclear export pathway. EMBO J 23:3227-3236
62. Ohno M, Segref A, Bachi A, Wilm M, Mattaj IW (2000) PHAX, a mediator of U snRNA nuclear export whose activity is regulated by phosphorylation. Cell 101:187-198
63. Papp I, Mette MF, Aufsatz W, Daxinger L, Schauer SE, Ray A, van der Winden J, Matzke M, Matzke AJM (2003) Evidence for nuclear processing of plant micro RNA and short interfering RNA precursors. Plant Phys 132:1382-1390
64. Papp I, Mur LA, Dalmadi A, Dulai S, Koncz C (2004) A mutation in the cap binding protein 20 gene confers drought tolerance to Arabidopsis. Plant Mol Biol. 5(5):679-686
65. Paraskeva E, Izaurralde E, Bischoff FR, Huber J, Kutay U, Hartmann E, Lührmann R, Görlich D (1999) CRMl-mediated recycling of snurportin 1 to the cytoplasm. J Cell Biol 145:255-264
66. Park M-Y, Wu G, Gonzalez-Sulser A, Vaucheret H, Poethig RS (2005) Nuclear processing and export of microRNAs in Arabidopsis. Proc Natl Acad Sci USA 102:3691-3696
67. Parry G, Ward S, Cernac A, Dharmasiri S, Estelle M (2006) The Arabidopsis SUPPRESSOR OF AUXIN RESISTANCE proteins are nucleoporins with an important role in hormone signaling and development. Plant Cell 18:1590-1603
68. Pay A, Resch K, Frohnmeyer H, Fejes E, Nagy F, Nick P (2002) Plant RanGAPs are localised at the nuclear envelope in interphase and associated with microtubules in mitotic cells. Plant J 30:699-709
69. Pemberton LF, Paschal BM (2005) Mechanisms of receptor-mediated nuclear import and nuclear export. Traffic 6:187-198
70. Pendle AF, Clark GP, Boon R, Lewandowska D, Lam YW, Andersen J, Mann M, Lamond AI, Brown JWS, Shaw PJ (2005) Poteomic analysis of the Arabidopsis nucleolus suggests novel nucleolar functions. Mol Biol Cell 16:260-269
71. Poon IKH, Jans DA (2005) Regulation of nuclear transport: central role in development and transformation? Traffic 6:173-186
72. Razem FA, El-Kereamy A, Abrams SR, Hill RD (2006) The RNA-binding protein FCA is an abscisic acid receptor. Nature 439:290-294
73. Ribbeck K, Lipowsky G, Kent HM, Stewart M, Görlich D (1998) NTF2 mediates nuclear import of Ran. EMBO J 17:6587-6598
74. Rodriguez MS, Dargemont C, Stutz F (2004) Nuclear export of RNA. Biol Cell 96:639-655
75. Ryu H, Kim K, Cho H, Park J, Choe S, Hwang I (2007) Nucleocytoplasmic shuttling of BZR1 mediated by phosphorylation is essential in Arabidopsis brassinosteroid signaling. Plant Cell 19:2749-2762
76. Smith A, Brownawell A, Macara IG (1998) Nuclear import of Ran is mediated by the transport factor NTF2. Curr Biol 8:1403-1406
77. Solsbacher J, Maurer P, Bischoff FR, Schlenstedt G (1998) Cselp is involved in export of yeast importin a from the nucleus. Mol Cell Biol 18:6805-6815
78. Stewart M (2007) Ratcheting mRNA out of the nucleus. Mol Cell 25:327-330
79. Stutz F, Izaurralde E (2003) The interplay of nuclear mRNP assembly, mRNA surveillance and export. Trends Cell Biol 13:319-327
80. Stutz F, Bachi A, Doerks T, Braun IC, Seraphin B, Wilm M, Bork P, Izaurralde E (2000) REF, an evolutionary conserved family of hnRNP-like proteins, interacts with TAP/Mex67p and participates in mRNA export. RNA 6:638-650
81. Stüven T, Hartmann E, Görlich D (2003) Exportin 6: a novel nuclear export receptor that is specific for profilin-actin complexes. EMBO J 22:5928-5940
82. Suo Y, Miernyk JA (2004) Regulation of nucleocytoplasmic localization of the AtDjC6 chaperone protein. Protoplasma 224:79-89
83. Suyama M, Doerks T, Braun IC, Sattler M, Izaurralde E, Bork P (2000) Prediction of structural domains of TAP reveals details of its interaction with p15 and nucleoporins. EMBO Rep 1:53-58
84. Telfer A, Poethig RS (1998) HASTY: a gene that regulates the timing of shoot maturation in Arabidopsis thaliana. Development 125:1889-1898 Thomas F, Kutay U (2003) Biogenesis and nuclear export of ribosomal subunits in higher eukary-otes depend on the CRM1 export pathway. J Cell Sci 116:2409-2419
85. Tillemans V, Leponce I, Rausin G, Dispa L, Motte P (2006) Insights into nuclear organization in plants as revealed by the dynamic distribution of Arabidopsis SR splicing factors. Plant Cell 18:3218-3234
86. Turpin P, Ossareh-Nazari B, Dargemont C (1999) Nuclear transport and transcriptional regulation. FEBS Lett 452:82-86
87. Uhrig JF, Canto T, Marshall D, MacFarlane SA (2004) Relocalization of nuclear ALY proteins to the cytoplasm by the tomato Bushy stunt virus pl9 pathogenicity protein. Plant Phys 135:2411-2423
88. Van de Peer Y, De Wachter R (1997) Construction of evolutionary distance trees with TREECON for Windows: accounting for variation in nucleotide substitution rate among sites. Comput Appl Biosci 13:227-230
89. Vetter G, Hily J-M, Klein E, Schmidlin L, Haas M, Merkle T, Gilmer D (2004) Nucleo-cytoplasmic shuttling of the beet necrotic yellow vein virus RNA-3-encoded p25 protein. J Gen Virol 85:2459-2469
90. Vinciguerra P, Stutz F (2004) mRNA export: an assembly line from genes to nuclear pores. Curr Opin Cell Biol 16:285-292
91. Weis K (2003) Regulating access to the genome: nucleocytoplasmic transport throughout the cell cycle. Cell 112:441-451
92. Wiegand HL, Coburn GA, Zeng Y, Kang Y, Bogerd HP, Cullen BR (2002) Formation of TAP/NXT1 heterodimers activates TAP-dependent nuclear mRNA export by enhancing recruitment to nuclear pore complexes. Mol Cell Biol 22:245-256
93. Xie Z, Kasschau KD, Carrington JC (2003) Negative feedback regulation of Dicer-Likel in Arabidopsis by microRNA-guided mRNA degradation. Curr Biol 13:784-789
94. Xu XM, Meier I (2008) The nuclear pore comes to the fore. Trends Plant Sci 13:20-27
95. Xu XM, Rose A, Muthuswamy S, Jeong SY, Venkatakrishnan S, Zhao Q, Meier I (2007) NUCLEAR PORE ANCHOR, the Arabidopsis homolog of Tpr/Mlpl/Mlp2/megator, is involved in mRNA export and SUMO homeostasis and affects diverse aspects of plant development. Plant Cell 19:1537-1548
96. Yao W, Roser D, Köhler A, Bradatsch B, Baßler J, Hurt E (2007) Nuclear export of ribosomal 60S subunits by the general mRNA export receptor Mex67-Mtr2. Mol Cell 26:51-62
97. Yi R, Qin Y, Macara IG, Cullen BR (2003) Exportin-5 mediates the nuclear export of pre-micro-RNAs and short hairpin RNAs. Genes Dev 17:3011-3016
98. Zeidler M, Zhou Q, Sarda X, Yau CP, Chua NH (2004) The nuclear localization signal and the C-terminal region of FHY1 are required for transmission of phytochrome A signals. Plant J 40:355-365
99. Zemp I, Kutay U (2007) Nuclear export and cytoplasmic maturation of ribosomal subunits. FEBS Lett 581:2783-2793
100. Zhao Q, Leung S, Corbett AH, Meier I (2006) Identification and characterization of the Arabidopsis orthologs of Nuclear Transport Factor 2, the nuclear import factor of Ran. Plant Phys 140:869-878
101. Zhao J, Zhang W, Zhao Y, Gong X, Guo L, Zhu G, Wang X, Gong Z, Schumaker KS, Guo Y (2007) SAD2, an importin-like protein, is required for UV-B response in Arabidopsis by mediating MYB4 nuclear trafficking. Plant Cell 19:3805-3818
102. Ziemienowicz A, Haasen D, Staiger D, Merkle T (2003) Arabidopsis Transportin is the nuclear import receptor for the circadian clock-regulated RNA-binding protein AtGRP7. Plant Mol Biol 53:201-212