Unexpected complexity of poly(A)-binding protein gene families in flowering plants: Three conserved lineages that are at least 200 million years old and possible auto- and cross-regulation

Genetics

Volumn 163, Issue 1, 2003, Pages 311-319

  Belostotsky, Dmitry A ^a  

^a STATE UNIVERSITY OF NEW YORK   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BINDING PROTEIN; MESSENGER RNA; POLYADENYLIC ACID BINDING PROTEIN; RECOMBINANT PROTEIN; UNCLASSIFIED DRUG;

AMINO ACID SEQUENCE; ARABIDOPSIS; ARTICLE; AUTOREGULATION; CELL TYPE; CONTROLLED STUDY; COTYLEDON; EUKARYOTE; FEEDBACK SYSTEM; FLOWERING; GENE EXPRESSION; GENETIC ANALYSIS; GENETIC CODE; GENETIC CONSERVATION; GENETIC VARIABILITY; GENOME; INTRON; MESSENGER RNA SYNTHESIS; MOLECULAR PHYLOGENY; MULTIGENE FAMILY; NEGATIVE FEEDBACK; NONHUMAN; PLANT DEVELOPMENT; PLANT GROWTH; PRIORITY JOURNAL; PROTEIN EXPRESSION; PROTEIN FUNCTION; PROTEIN METABOLISM; RICE; RNA TRANSLATION;

ANGIOSPERMS; ARABIDOPSIS; EVOLUTION, MOLECULAR; GENE EXPRESSION REGULATION, PLANT; MULTIGENE FAMILY; ORYZA SATIVA; PHYLOGENY; POLY(A)-BINDING PROTEINS;

ARABIDOPSIS; ARABIDOPSIS THALIANA; DICOTYLEDONEAE; EMBRYOPHYTA; EUKARYOTA; LILIOPSIDA; MAGNOLIOPHYTA;

EID: 0037279714     PISSN: 00166731     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (49)

1. ALTSCHUL, S. F., T. L. MADDEN, A. A. SCHAFFER, J. ZHANG, Z. ZHANG et al., 1997 Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res. 25: 3389-3402.
2. AN, Y. Q., S. HUANG, J. M. McDOWELL, E. C. McKINNEY and R. B. MEAGHER, 1996 Conserved expression of the Arabidopsis ACT1 and ACT 3 actin subclass in organ primordia and mature pollen. Plant Cell 8: 15-30.
3. BAG, J., 2001 Feedback inhibition of poly(A)-binding protein mRNA translation. A possible mechanism of translation arrest by stalled 40 S ribosomal subunits. J. Biol. Chem. 276: 47352-47360.
4. BELOSTOTSKY, D., and R. B. MEAGHER, 1993 Differential organ-specific expression of three poly(A) binding protein genes from Arabidopsis. Proc. Natl. Acad. Sci. USA 90: 6686-6690.
5. BELOSTOTSKY, D. A., and R. B. MEAGHER, 1996 Pollen-, ovule-, and early embryo-specific poly(A) binding protein from Arabidopsis complements essential functions in yeast. Plant Cell 8: 1261-1275.
6. BERNSTEIN, P., S. W. PELTZ and J. ROSS, 1989 The poly(A)-poly(A)binding protein complex is a major determinant of mRNA stability in vitro. Mol. Cell. Biol. 9: 659-670.
7. BROWN, J. T., and A. W. JOHNSON, 2001 A cis-acting element known to block 3′ mRNA degradation enhances expression of poly-Aminus mRNA in wild-type yeast cells and phenocopies a ski mutant. RNA 7: 1566-1577.
8. BURD, C. G., E. L. MATUNIS and G. DREYFUSS, 1991 The multiple RNA binding domains of the mRNA poly(A)-binding protein have different RNA-binding activities. Mol. Cell. Biol. 11: 3419-3424.
9. CAPONIGRO, G., and R. PARKER, 1995 Multiple functions for the poly(A) binding protein in mRNA decapping and deadenylation in yeast. Genes Dev. 9: 2421-2432.
10. CAPONIGRO, G., and R. PARKER, 1996 Mechanisms and control of mRNA turnover in Saccharomyces cerevisiae. Microbiol. Rev. 60: 233-249.
11. CHEKANOVA, J. A., R. J. SHAW, M. A. WILLS and D. A. BELOSTOTSKY, 2000 Poly(A) tail-dependent exonuclease AtRrp41p from Arabidopsis thaliana rescues 5.8 S rRNA processing and mRNA decay defects of the yeast ski6 mutant and is found in an exosome-sized complex in plant and yeast cells. J. Biol. Chem. 275: 33158-33166.
12. CHEKANOVAJ, A., R. J. SHAW and D. A. BELOSTOTSKY, 2001 Analysis of an essential requirement for the poly(A) binding protein function using cross-species complementation. Curr. Biol. 11: 1207-1214.
13. CLOUGH, S. J., and A. F. BENT, 1998 Floral dip: a simplified method for Agrobacterium-mediated transformation of Arabidopsis thaliana. Plant J. 16: 735-743.
14. COLLER, J. M., N. K. GRAY and M. P. WICKENS, 1998 mRNA stabilization by poly(A) binding protein is independent of poly(A) and requires translation. Genes Dev. 12: 3226-3235.
15. COSSON, B., A. COUTURIER, S. CHABELSKAYA, D. KIKTEV, S. INGEVECHTOMOV et al., 2001 Poly(A)-binding protein acts in translation termination via eukaryotic release factor 3 interaction and does not influence [PSI(+)] propagation. Mol. Cell. Biol. 22: 3301-3315.
16. DEARDORFF, J. A., and A. B. SACHS, 1997 Differential effects of aromatic and charged residue substitutions in the RNA binding domains of the yeast poly(A)-binding protein. J. Mol. Biol. 269: 67-81.
17. DE MELO NETO, O. P., N. STANDART and M. MARTINS DE SA, 1995 Autoregulation of poly(A)-binding protein synthesis in vitro. Nucleic Acids Res. 23: 2198-2205.
18. DEO, R. C., J. B. BONANNO, N. SONENBERG and S. K. BURLEY, 1999 Recognition of polyadenylate RNA by the poly(A)-binding protein. Cell 98: 835-845.
19. DE SOUZA, S. J., M. LONG, R. J. KLEIN, S. ROY, S. LIN et al., 1998 Toward a resolution of the introns early/late debate: only phase zero introns are correlated with the structure of ancient proteins. Proc. Natl. Acad. Sci. USA 95: 5094-5099.
20. GALLIE, D. R., 1991 The cap and poly(A) tail function synergistically to regulate mRNA translational efficiency. Genes Dev. 5: 2108-2116.
21. GORLACH, M., C. G. BURD and G. DREYFUSS, 1994 The mRNA poly (A)-binding protein: localization, abundance, and RNA-binding specificity. Exp. Cell Res. 211: 400-407.
22. GUTIERREZ, R. A., R. M. EWING, J. M. CHERRY and P. J. GREEN, 2002 Identification of unstable transcripts in Arabidopsis by cDNA microarray analysis: rapid decay is associated with a group of touch- and specific clock-controlled genes. Proc. Natl. Acad. Sci. USA 99: II513-II518.
23. HORNSTEIN, E., A. GIT, I. BRAUNSTEIN, D. AVNT and O. MEYUHAS, 1999 The expression of poly(A)-binding protein gene is translationally regulated in a growth-dependent fashion through a 5′terminal oligopyrimidine tract motif. J. Biol. Chem. 274: 1708-1714.
24. HOSHINO, S., M. IMAI, T. KOBAYASHI, N. UCHIDA and T. KATADA, 1999 The eukaryotic polypeptide chain releasing factor (eRF3/GSPT) carrying the translation termination signal to the 3′-poly (A) tail of mRNA. Direct association of erf3/GSPT with polyadenylate-binding protein. J. Biol. Chem. 274: 16677-16680.
25. IMATAKA,H., A. GRADI and N. SONNENBERG, 1998 A newly identified N-terminal amino acid sequence of human eIF4G binds poly(A)binding protein and functions in poly(A)-dependent translation. EMBO J. 17: 7480-7489.
26. JEFFERSON, R. A., T. A. KAVANAGH and M. W. BEVAN, 1987 GUS fusions: β-glucuronidase as a sensitive and versatile gene fusion marker in higher plants. EMBO J. 6: 3901-3907.
27. KESSLER, S. H., and A. B. SACHS, 1998 RNA recognition motif 2 of yeast Pab1p is required for its functional interaction with eukaryotic translation initiation factor 4G. Mol. Cell. Biol. 18: 51-57.
28. KHALEGHPOUR, K., A. KAHVEJIAN, G. DE CRESCENZO, G. ROY, Y. V. SVITKIN et al., 2001 Dual interactions of the translational repressor Paip2 with poly(A) binding protein. Mol. Cell. Biol. 21: 5200-5213.
29. KUHN, U., and T. PIELER, 1996 Xenopus poly(A) binding protein: functional domains in RNA binding and protein-protein interaction. J. Mol. Biol. 256: 20-30.
30. MANGUS, D. A., N. AMRANI and A. JACOBSON, 1998 Pbp1p, a factor interacting with Saccharomyces cerevisiae poly(A)-binding protein, regulates polyadenylation. Mol. Cell. Biol. 18: 7383-7396.
31. MARHOUL, J. F., and T. H. ADAMS, 1996 Aspergillus fabM encodes an essential product that is related to poly(A)-binding proteins and activates development when overexpressed. Genetics 144: 1463-1470.
32. NIETFELD, W., H. MENTZEL, and T. PIELER, 1990 The Xenopus laevis poly(A) binding protein is composed of multiple functionally independent RNA binding domains. EMBO J. 9: 3699-3705.
33. PALANIVELU, R., D. A. BELOSTOTSKY and R. B. MEAGHER, 2000a Arabidopsis thaliana poly(A) binding protein 2 (PAB2) functions in yeast translational and mRNA decay processes. Plant J. 22: 187-198.
34. PALANIVELU, R., D. A. BELOSTOTSKY and R. B. MEAGHER, 2000b Conserved expression of Arabidopsis thaliana poly(A) binding protein 2 (PAB2), in distinct vegetative and reproductive tissues. Plant J. 22: 199-210.
35. PICKETT, F. B., and D. R. MEEKS-WAGNER, 1995 Seeing double: appreciating genetic redundancy. Plant Cell 7: 1347-1356.
36. PROWELLER, A., and J. S. BUTLER, 1996 Ribosomal association of poly(A)-binding protein in poly(A)-deficient Saccharomyces cerevisiae. J. Biol. Chem. 271: 10859-10865.
37. ROY, G., G. DE CRESCENZO, K. KHALEGHPOUR, A. KAHVEJIAN, M. O'CONNOR-McCOURT et al., 2002 Paip1 interacts with poly(A) binding protein through two independent binding motifs. Mol. Cell. Biol. 22: 3769-3782.
38. SACHS, A. B., M. W. BOND and R. D. KORNBERG, 1986 A single gene from yeast for both nuclear and cytoplasmic polyadenylatebinding proteins: domain structure and expression. Cell 45: 827-835.
39. SACHS, A. B., R. W. DAVIS and R. D. KORNBERG, 1987 A single domain of yeast poly(A)-binding protein is necessary and sufficient for RNA binding and cell viability. Mol. Cell. Biol. 7: 3268-3276.
40. SIGRIST, S. J., P. R. THIEL, D. F. REIFF, P. E. LACHANCE, P. LASKO et al., 2000 Postsynaptic translation affects the efficacy and morphology of neuromuscular junctions. Nature 405: 1062-1065.
41. SWOFFORD, D. L., 1993 PAUP: Phylogenetic Analysis Using Parsimony. Illinois Natural History Survey, Champaign, IL.
42. TARUN, S., and A. B. SACHS, 1995 A common function for mRNA 5′ and 3′ ends in translation initiation in yeast. Genes Dev. 9: 2997-3007.
43. TARUN, S. Z., S. E. WELLS, J. A. DEARDORFF and A. B. SACHS, 1997 Translation initiation factor eIF4G mediates in vitro poly(A) taildependent translation. Proc. Natl. Acad. Sci. USA 94: 9046-9051.
44. THOMAS, J. H., 1993 Thinking about genetic redundancy. Trends Genet. 9: 380-384.
45. WAKIYAMA, M., H. IMATAKA and N. SONENBERG, 2000 Interaction of eIF4G with poly(A)-binding protein stimulates translation and is critical for Xenopus oocyte maturation. Curr. Biol. 10: 1147-1150.
46. WELLS, S. E., P. E. HILLNER, R. D. VALE and A. B. SACHS, 1998 Circularization of mRNA by eukaryotic translation initiation factors. Mol. Cell 2: 135-140.
47. WILUSZ, C. J., M. GAO, C. L. JONES, J. WILUSZ and S. W. PELTZ, 2001 Poly(A)-binding proteins regulate both mRNA deadenylation and decapping in yeast cytoplasmic extracts. RNA 7: 1416-1424.
48. WOLFE, K. H., M. GOUY, Y.-W. YANG, P. M. SHARP and W.-H. LI, 1989 Date of the monocot-dicot divergence estimated from chloroplast DNA sequence data. Proc. Natl. Acad. Sci. USA 86: 6201-6205.
49. YOHN, C. B., A. COHEN, A. DANON and S. P. MAYFIELD, 1998 A poly(A) binding protein functions in the chloroplast as a messagespecific translation factor. Proc. Natl. Acad. Sci. USA 95: 2238-2243.