Isolation of novel coregulatory protein networks associated with DNA-bound estrogen receptor alpha

BMC Molecular Biology

Volumn 9, Issue , 2008, Pages

  Schultz Norton, Jennifer R ^a   Ziegler, Yvonne S ^a   Likhite, Varsha S ^b   Yates, John R ^c   Nardulli, Ann M ^a  

^a UNIVERSITY OF ILLINOIS AT URBANA CHAMPAIGN   (United States)

^b UNIVERSITY OF ILLINOIS AT URBANA CHAMPAIGN   (United States)

^c SCRIPPS RESEARCH INSTITUTE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

AGAROSE; ESTROGEN RECEPTOR ALPHA; REGULATOR PROTEIN; TRANSCRIPTION FACTOR; DNA; DNA BINDING PROTEIN; PROTEIN;

ARTICLE; BINDING SITE; CATALYSIS; CELL LINE; DNA PROTEIN COMPLEX; DNA SEQUENCE; ENZYME ACTIVITY; HUMAN; HUMAN CELL; MASS SPECTROMETRY; PROTEIN ANALYSIS; PROTEIN DNA BINDING; PROTEIN DNA INTERACTION; PROTEIN EXPRESSION; PROTEIN FUNCTION; PROTEIN ISOLATION; PROTEIN PURIFICATION; RECEPTOR BINDING; AGAR GEL ELECTROPHORESIS; CHEMISTRY; GENE EXPRESSION REGULATION; HELA CELL; ISOLATION AND PURIFICATION; METABOLISM; METHODOLOGY; PROTEIN BINDING; TUMOR CELL LINE;

CELL LINE, TUMOR; DNA; DNA-BINDING PROTEINS; ELECTROPHORESIS, AGAR GEL; ESTROGEN RECEPTOR ALPHA; GENE EXPRESSION REGULATION; HELA CELLS; HUMANS; PROTEIN BINDING; PROTEINS;

EID: 56649089874     PISSN: None     EISSN: 14712199     Source Type: Journal    
DOI: 10.1186/1471-2199-9-97     Document Type: Article

References (76)

1. Beato M Herrlich P Schutz G Steroid hormone receptors: Many actors in search of a plot Cell 1995, 83:851-857. 10.1016/0092-8674(95)90201-5 8521509
2. Wood JR Greene GL Nardulli AM Estrogen response elements function as allosteric modulators of estrogen receptor conformation Mol Cell Biol 1998, 18:1927-1934. 121422 9528764
3. Wood JR Likhite VS Loven MA Nardulli AM Allosteric modulation of estrogen receptor conformation by different estrogen response elements Mol Endocrinol 2001, 15:1114-1126. 10.1210/me.15.7.1114 11435612
4. Loven MA Likhite VS Choi I Nardulli AM Estrogen response elements alter coactivator recruitment through allosteric modulation of estrogen receptor beta conformation J Biol Chem 2001, 276:45282-45288. 10.1074/ jbc.M106211200 11574541
5. Loven MA Wood JA Nardulli AM Interaction of estrogen receptors alpha and beta with estrogen response elements Mol Cell Endocrinol 2001, 181:151-163. 10.1016/S0303-7207(01)00491-9 11476949
6. Klinge CM Estrogen receptor interaction with estrogen response elements Nucleic Acids Res 2001, 29:2905-2919. 55815 11452016 10.1093/nar/ 29.14.2905
7. Hall JM McDonnell DP Korach KS Allosteric regulation of estrogen receptor structure, function, and coactivator recruitment by different estrogen response elements Mol Endocrinol 2002, 16:469-486. 10.1210/ me.16.3.469 11875105
8. Robyr D Wolffe AP Wahli W Nuclear hormone receptor coregulators in action: Diversity for shared tasks Mol Endocrinol 2000, 14:329-347. 10.1210/me.14.3.329 10707952
9. Torchia J Glass C Rosenfeld MG Co-activators and co-repressors in the integration of transcriptional responses Curr Opin Cell Biol 1998, 10:373-383. 10.1016/S0955-0674(98)80014-8 9640539
10. Halachmi S Marden E Martin G MacKay H Abbondanza C Brown M Estrogen receptor-associated proteins: Possible mediators of hormone-induced transcription Science 1994, 264:1455-1458. 10.1126/science.8197458 8197458
11. Oñate SA Tsai SY Tsai M-J O'Malley BW Sequence and characterization of a coactivator for the steroid hormone receptor superfamily Science 1995, 270:1354-1357. 10.1126/science.270.5240.1354 7481822
12. Anzick SL Kononen J Walker RL Azorsa DO Tanner MM Guan X-Y Sauter G Kallioniemi O-P Trent JM Meltzer PS AIB1, a steroid receptor coactivator amplified in breast and ovarian cancer Science 1997, 277:965-968. 10.1126/science.277.5328.965 9252329
13. Chen H Lin RJ Schiltz RL Chakravarti D Nash A Nagy L Privalsky ML Nakatani Y Evans RM Nuclear receptor coactivator ACTR is a novel histone acetyltransferase and forms a multimeric activation complex with P/CAF and CBP/p300 Cell 1997, 90:569-580. 10.1016/S0092-8674(00)80516-4 9267036
14. Li H Gomes PJ Chen JD RAC3, a steroid/nuclear receptor-associated coactivator that is related to SRC-1 and TIF2 Proc Natl Acad Sci USA 1997, 94(16):8479-8484. 22964 9238002 10.1073/pnas.94.16.8479
15. Voegel JJ Heine MJS Zechel C Chambon P Gronemeyer H TIF 2, a 160 kDa transcriptional mediator for the ligand-dependent activation function AF-2 of nuclear receptors EMBO J 1996, 15:101-108.
16. Hong H Kulwant K Trivedi A Johnson DL Stallcup MR GRIP1, a novel mouse protein that serves as a transcriptional coactivator in yeast for the hormone binding domains of steroid receptors Proc Natl Acad Sci USA 1996, 93:4948-4952. 39385 8643509 10.1073/pnas.93.10.4948
17. Hong H Kohli K Garabedian MJ Stallcup MR GRIP1, a transciptional coactivator for the AF-2 transactivation domain of steroid, thyroid, retinoid, and vitamin D receptors Mol Cell Biol 1997, 17:2735-2744. 232124 9111344
18. Yang XJ Ogryzko VV Nishikawa J Howard BH Nakatani Y A p300/ CBP-associated factor that competes with the adenoviral oncoprotein E1A Nature 1996, 382(6589):319-324. 10.1038/382319a0 8684459
19. Ogryzko VV Schiltz RL Russanova V Howard BH Nakatani Y The transcriptional coactivators p300 and CBP are histone acetyltransferases Cell 1996, 87:953-959. 10.1016/S0092-8674(00)82001-2 8945521
20. Spencer TE Jenster G Burcin MM Allis CD Zhou J Mizzen CA McKenna NJ Onate SA Tsai SY Tsai M-J O'Malley BW Steroid receptor coactivator-1 is a histone acetyltransferase Nature 1997, 389:194-198. 10.1038/38304 9296499
21. Eckner R Ewen ME Newsome D Gerdes M Decaprio JA Lawrence JB Livingston DM Molecular cloning and functional analysis of the adenovirus E1A-associated 300-kD protein (p300) reveals a protein with properties of a transcriptional adaptor Genes Dev 1994, 8:869-884. 10.1101/ gad.8.8.869 7523245
22. Smith CL Oñate SA Tsai M-J O'Malley BW CREB binding protein acts synergistically with steroid receptor coactivator-1 to enhance steroid receptor-dependent transcription Proc Natl Acad Sci USA 1996, 93:8884-8888. 38563 8799122 10.1073/pnas.93.17.8884
23. Chakravarti D LaMorte VJ Nelson MC Nakajima T Schulman IG Juguilon H Montminy M Evans RM Role of CBP/P300 in nuclear receptor signaling Nature 1996, 383:99-103. 10.1038/383099a0 8779723
24. Hanstein B Liu H Yancisin MC Brown M Functional analysis of a novel estrogen receptor beta isoform Mol Endocrinol 1999, 13:129-137. 10.1210/ me.13.1.129 9892018
25. Fondell JD Ge H Roeder RG Ligand induction of a transcriptionally active thyroid hormone receptor coactivator complex Proc Natl Acad Sci USA 1996, 93(16):8329-8333. 38670 8710870 10.1073/pnas.93.16.8329
26. Rachez C Suldan Z Ward J Chang CP Burakov D Erdjument-Bromage H Tempst P Freedman LP A novel protein complex that interacts with the vitamin D3 receptor in a ligand-dependent manner and enhances VDR transactivation in a cell-free system Genes Dev 1998, 12(12):1787-1800. 316901 9637681 10.1101/gad.12.12.1787
27. Rachez C Lemon BD Suldan Z Bromleigh V Gamble M Naar AM Erdjument-Bromage H Tempst P Freedman LP Ligand-dependent transcription activation by nuclear receptors requires the DRIP complex Nature 1999, 398(6730):824-828. 10.1038/19783 10235266
28. Yuan CX Ito M Fondell JD Fu ZY Roeder RG The TRAP220 component of a thyroid hormone receptor-associated protein (TRAP) coactivator complex interacts directly with nuclear receptors in a ligand-dependent fashion Proc Natl Acad Sci USA 1998, 95(14):7939-7944. 20908 9653119 10.1073/ pnas.95.14.7939
29. Burakov D Wong CW Rachez C Cheskis BJ Freedman LP Functional interactions between the estrogen receptor and DRIP205, a subunit of the heteromeric DRIP coactivator complex J Biol Chem 2000, 275(27):20928-20934. 10.1074/jbc.M002013200 10770935
30. Zamir I Harding HP Atkins GB Horlein A Glass CK Rosenfeld MG Lazar MA A nuclear hormone receptor corepressor mediates transcriptional silencing by receptors with distinct repression domains Mol Cell Biol 1996, 16:5458-5465. 231546 8816459
31. Chen JD Evans RM A transcriptional co-repressor that interacts with nuclear hormone receptors Nature 1995, 377:454-457. 10.1038/377454a0 7566127
32. Smith C Nawaz Z O'Malley B Coactivator and corepressor regulation of agonist/antagonist activity of the mixed antiestrogen, 4-hydroxytamoxifen Mol Endocrinol 1997, 11:657-666. 10.1210/me.11.6.657 9171229
33. Heinzel T Lavinsky RM Mullen TM Soderstrom M Laherty CD Torchia J Yang WM Brard G Ngo SD Eisenman RN Rose DW Glass CK Rosenfeld MG A complex containing N-CoR, mSin3 and histone deacetylase mediates transcriptional repression Nature 1997, 386:43-48. 10.1038/387043a0
34. Nagy L Kao H-Y Chakravarti D Lin RJ Hassig CA Ayer DE Schreiber SL Evans RM Nuclear receptor repression mediated by a complex containing SMRT, mSin3A, and histone deacetylase Cell 1997, 89:373-380. 10.1016/ S0092-8674(00)80218-4 9150137
35. Hanstein B Eckner R DiRenzo J Halachmi S Liu H Searcy B Kurokawa R Brown M p300 is a component of an estrogen receptor coactivator complex Proc Natl Acad Sci USA 1996, 93(21):11540-11545. 38093 8876171 10.1073/ pnas.93.21.11540
36. Ranish JA Yudkovsky N Hahn S Intermediates in formation and activity of the RNA polymerase II preinitiation complex: Holoenzyme recruitment and a postrecruitment role for the TATA box and TFIIB Genes Dev 1999, 13(1):49-63. 316368 9887099 10.1101/gad.13.1.49
37. Soutoglou E Talianidis I Coordination of PIC assembly and chromatin remodeling during differentiation-induced gene activation Science 2002, 295(5561):1901-1904. 10.1126/science.1068356 11884757
38. Loven MA Muster N Yates JR Nardulli AM A novel estrogen receptor alpha associated protein, template activating factor I beta, inhibits acetylation and transactivation Mol Endocrinol 2003, 17:67-78. 10.1210/ me.2002-0280 12511607
39. Loven MA Davis RE Curtis CD Muster N Yates JR Nardulli AM A novel estrogen receptor alpha-associated protein alters receptor-deoxyribonucleic acid interactions and represses receptor-mediated transcription Mol Endocrinol 2004, 18(11):2649-2659. 10.1210/me.2003-0195 15308690
40. Likhite VS Cass EI Anderson SD Yates JR Nardulli AM Interaction of estrogen receptor alpha with 3-methyladenine DNA glycosylase modulates transcription and DNA repair J Biol Chem 2004, 279(16):16875-16882. 10.1074/jbc.M313155200 14761960
41. Schultz-Norton JR McDonald WH Yates JR Nardulli AM Protein disulfide isomerase serves as a molecular chaperone to maintain estrogen receptor {alpha} structure and function Mol Endocrinol 2006, 20(9):1982-1995. 10.1210/me.2006-0006 16690750
42. Schultz-Norton JR Walt KA Ziegler YS McLeod IX Yates JR Raetzman LT Nardulli AM The deoxyribonucleic acid repair protein flap endonuclease-1 modulates estrogen-responsive gene expression Mol Endocrinol 2007, 21(7):1569-1580. 10.1210/me.2006-0519 17488975
43. Schultz-Norton JR Gabisi VA Ziegler YS McLeod IX Yates JR Nardulli AM Interaction of estrogen receptor alpha with proliferating cell nuclear antigen Nucleic Acids Res 2007, 35(15):5028-5038. 1976446 17636311 10.1093/nar/gkm533
44. El Marzouk S Schultz-Norton JR Likhite VS McLeod IX Yates JR Nardulli AM Rho GDP dissociation inhibitor alpha interacts with estrogen receptor alpha and influences estrogen responsiveness J Mol Endocrinol 2007, 39(4):249-259. 10.1677/JME-07-0055 17909265
45. Curtis CD Likhite VS McLeod IX Yates JR Nardulli AM Interaction of the tumor metastasis suppressor nonmetastatic protein 23 homologue H1 and estrogen receptor alpha alters estrogen-responsive gene expression Cancer Res 2007, 67(21):10600-10607. 10.1158/0008-5472.CAN-07-0055 17975005
46. Rao AK Ziegler YS McLeod IX Yates JR Nardulli AM Effects of cu/zn superoxide dismutase on estrogen responsiveness and oxidative stress in human breast cancer cells Mol Endocrinol 2008, 22(5):1113-1124. 10.1210/ me.2007-0381 18258688
47. Creekmore AL Walt KA Schultz-Norton JR Ziegler YS McLeod IX Yates JR Nardulli AM The role of retinoblastoma associated proteins 46 and 48 in estrogen receptor alpha mediated gene expression Mol Cell Endocrinol 2008, 291(1-2):79-86. 10.1016/j.mce.2008.05.016 18577416
48. Landel CC Kushner PJ Greene GL The interaction of human estrogen receptor with DNA is modulated by receptor-associated proteins Mol Endocrinol 1994, 8:1407-1419. 10.1210/me.8.10.1407 7854357
49. Boonyaratanakornkit V Melvin V Prendergast P Altmann M Ronfani L Bianchi ME Taraseviciene L Nordeen SK Allegretto EA Edwards DP High-mobility group chromatin proteins 1 and 2 functionally interact with steroid hormone receptors to enhance their DNA binding in vitro and transcriptional activity in mammalian cells Mol Cell Biol 1998, 18(8):4471-4487. 109033 9671457
50. Romine L Wood J Lamia L Prendergast P Edwards D Nardulli A The high mobility group protein 1 enhances binding of the estrogen receptor DNA binding domain to the estrogen response element Mol Endocrinol 1998, 12:664-674. 10.1210/me.12.5.664 9605929
51. Vaesen M Barnikol-Watanabe S Gotz H Awni LA Cole T Zimmerman B Kratzin HD Hilschmann N Purification and characterization of two putative HLA class II associated proteins: PHAPI and PHAPII Biol Chem Hoppe-Seyler 1994, 375:113-126. 8192856
52. Beresford PJ Kam CM Powers JC Lieberman J Recombinant human granzyme A binds to two putative HLA-associated proteins and cleaves one of them Proc Natl Acad Sci USA 1997, 94(17):9285-9290. 23158 9256474 10.1073/ pnas.94.17.9285
53. Seo SB McNamara P Heo S Turner A Lane WS Chakravarti D Regulation of histone acetylation and transcription by INHAT, a human cellular complex containing the set oncoprotein Cell 2001, 104(1):119-130. 10.1016/ S0092-8674(01)00196-9 11163245
54. Lieberman J Fan Z Nuclear war: The granzyme A-bomb Curr Opin Immunol 2003, 15(5):553-559. 10.1016/S0952-7915(03)00108-0 14499264
55. Chowdhury D Beresford PJ Zhu P Zhang D Sung JS Demple B Perrino FW Lieberman J The exonuclease TREX1 is in the SET complex and acts in concert with NM23-H1 to degrade DNA during granzyme A-mediated cell death Mol Cell 2006, 23(1):133-142. 10.1016/j.molcel.2006.06.005 16818237
56. Lindahl T Sedgwick B Sekiguchi M Nakabeppu Y Regulation and expression of the adaptive response to alkylating agents Annu Rev Biochem 1988, 57:133-157. 10.1146/annurev.bi.57.070188.001025 3052269
57. Wood RD DNA repair in eukaryotes Annu Rev Biochem 1996, 65:135-167. 10.1146/annurev.bi.65.070196.001031 8811177
58. Tom S Henricksen LA Bambara RA Mechanism whereby proliferating cell nuclear antigen stimulates flap endonuclease 1 J Biol Chem 2000, 275(14):10498-10505. 10.1074/jbc.275.14.10498 10744741
59. Beresford PJ Zhang D Oh DY Fan Z Greer EL Russo ML Jaju M Lieberman J Granzyme A activates an endoplasmic reticulum-associated caspase-independent nuclease to induce single-stranded DNA nicks J Biol Chem 2001, 276(46):43285-43293. 10.1074/jbc.M108137200 11555662
60. Fan Z Beresford PJ Oh DY Zhang D Lieberman J Tumor suppressor NM23-H1 is a granzyme A-activated DNase during CTL-mediated apoptosis, and the nucleosome assembly protein SET is its inhibitor Cell 2003, 112(5):659-672. 10.1016/S0092-8674(03)00150-8 12628186
61. Fan Z Beresford PJ Zhang D Xu Z Novina CD Yoshida A Pommier Y Lieberman J Cleaving the oxidative repair protein Ape1 enhances cell death mediated by granzyme A Nat Immunol 2003, 4(2):145-153. 10.1038/ni885 12524539
62. Melvin VS Edwards DP Coregulatory proteins in steroid hormone receptor action: The role of chromatin high mobility group proteins HMG-1 and -2 Steroids 1999, 64(9):576-586. 10.1016/S0039-128X(99)00036-7 10503712
63. Verrier CS Roodi N Yee CJ Bailey R Jensen RA Bustin M Parl FF High-mobility group (HMG) protein HMG-1 and TATA-binding protein-associated factor TAFII30 affect estrogen receptor-mediated transcriptional activation Mol Endocrinol 1997, 11:1009-1019. 10.1210/ me.11.8.1009 9212049
64. Zhang CC Krieg S Shapiro DJ HMG-1 stimulates estrogen response element binding by estrogen receptor from stably transfected HeLa cells Mol Endocrinol 1999, 13(4):632-643. 10.1210/me.13.4.632 10194768
65. Aaltomaa S Lipponen P Syrjanen K Proliferating cell nuclear antigen (PCNA) immunolabeling as a prognostic factor in axillary lymph node negative breast cancer Anticancer Res 1993, 13(2):533-538. 8100128
66. Kim J Petz LN Ziegler YS Wood JR Potthoff SJ Nardulli AM Regulation of the estrogen-responsive pS2 gene in MCF-7 human breast cancer cells J Steroid Biochem Mol Biol 2000, 74(4):157-168. 10.1016/ S0960-0760(00)00119-9 11162921
67. Sakurai S Kitano K Okada K Hamada K Morioka H Hakoshima T Preparation and crystallization of human flap endonuclease FEN-1 in complex with proliferating-cell nuclear antigen, PCNA Acta Crystallogr D Biol Crystallogr 2003, 59(Pt 5):933-935. 10.1107/S0907444903004815 12777816
68. Dianova II Bohr VA Dianov GL Interaction of human AP endonuclease 1 with flap endonuclease 1 and proliferating cell nuclear antigen involved in long-patch base excision repair Biochemistry 2001, 40(42):12639-12644. 10.1021/bi011117i 11601988
69. Fan Z Beresford PJ Zhang D Lieberman J HMG2 interacts with the nucleosome assembly protein SET and is a target of the cytotoxic T-lymphocyte protease granzyme A Mol Cell Biol 2002, 22(8):2810-2820. 133744 11909973 10.1128/MCB.22.8.2810-2820.2002
70. Xia L Zheng L Lee HW Bates SE Federico L Shen B O'Connor TR Human 3-methyladenine-DNA glycosylase: Effect of sequence context on excision, association with PCNA, and stimulation by AP endonuclease J Mol Biol 2005, 346(5):1259-1274. 10.1016/j.jmb.2005.01.014 15713479
71. Li X Li J Harrington J Lieber MR Burgers PM Lagging strand DNA synthesis at the eukaryotic replication fork involves binding and stimulation of FEN-1 by proliferating cell nuclear antigen J Biol Chem 1995, 270(38):22109-22112. 10.1074/jbc.270.38.22109 7673186
72. Wu X Li J Li X Hsieh CL Burgers PM Lieber MR Processing of branched DNA intermediates by a complex of human FEN-1 and PCNA Nucleic Acids Res 1996, 24:2036-2043. 145902 8668533 10.1093/nar/24.11.2036
73. Hosfield DJ Mol CD Shen B Tainer JA Structure of the DNA repair and replication endonuclease and exonuclease FEN-1: Coupling DNA and PCNA binding to FEN-1 activity Cell 1998, 95:135-146. 10.1016/ S0092-8674(00)81789-4 9778254
74. Scharer OD Jiricny J Recent progress in the biology, chemistry and structural biology of DNA glycosylases Bioessays 2001, 23:270-281. 10.1002/1521-1878(200103)23:3<270::AID-BIES1037>3.0.CO;2-J 11223884
75. Das D Peterson RC Scovell WM High mobility group B proteins facilitate strong estrogen receptor binding to classical and half-site estrogen response elements and relax binding selectivity Mol Endocrinol 2004, 18:2616-2632. 10.1210/me.2004-0125 15256536
76. Hong R Chakravarti D The human proliferating cell nuclear antigen regulates transcriptional coactivator p300 activity and promotes transcriptional repression J Biol Chem 2003, 278:44505-44513. 10.1074/ jbc.M303138200 12937166