-
1
-
-
0027221640
-
Rates of spontaneous mutations among RNA viruses
-
Drake J. Rates of spontaneous mutations among RNA viruses. Proc Natl Acad Sci USA. 1993;90:4171-5.
-
(1993)
Proc Natl Acad Sci USA
, vol.90
, pp. 4171-4175
-
-
Drake, J.1
-
2
-
-
0033598717
-
Mutation rates among RNA viruses
-
Drake J, Holland J. Mutation rates among RNA viruses. Proc Natl Acad Sci USA. 1999;96:13910-13.
-
(1999)
Proc Natl Acad Sci USA
, vol.96
, pp. 13910-13913
-
-
Drake, J.1
Holland, J.2
-
3
-
-
0015133749
-
Self-organization of matter and evolution of biological macromolecules
-
Eigen M. Self-organization of matter and evolution of biological macromolecules. Naturwissenschaften. 1971;58:465-523.
-
(1971)
Naturwissenschaften
, vol.58
, pp. 465-523
-
-
Eigen, M.1
-
5
-
-
0030162644
-
On the nature of virus quasispecies
-
Eigen M. On the nature of virus quasispecies. Trends Microbiol. 1996;4: 216-18.
-
(1996)
Trends Microbiol
, vol.4
, pp. 216-218
-
-
Eigen, M.1
-
6
-
-
38349178145
-
Virus Evolution
-
Knipe D, Howley P, eds, PA, Lippincott-Williams & Wilkins
-
Domingo E. Virus Evolution. In: Knipe D, Howley P, eds. Fieds' Virology Filadelfia (PA): Lippincott-Williams & Wilkins 2007:389-421.
-
(2007)
Fieds' Virology Filadelfia
, pp. 389-421
-
-
Domingo, E.1
-
7
-
-
15544373334
-
Sequence space and quasispecies distribution
-
Domingo E, Ahlquist P, Holland J, eds, Boca Ratón, FL: CRC
-
Eigen M, Biebricher C. Sequence space and quasispecies distribution. In RNA Genetics (Domingo E, Ahlquist P, Holland J, eds). Boca Ratón, FL: CRC 1988;3:211-45.
-
(1988)
RNA Genetics
, vol.3
, pp. 211-245
-
-
Eigen, M.1
Biebricher, C.2
-
8
-
-
0030747157
-
RNA virus mutations and fitness for survival
-
Domingo E, Holland J. RNA virus mutations and fitness for survival. Annu Rev Microbiol. 1997;51:151-78.
-
(1997)
Annu Rev Microbiol
, vol.51
, pp. 151-178
-
-
Domingo, E.1
Holland, J.2
-
10
-
-
0034630910
-
Viruses at the edge of adaptation
-
Domingo E. Viruses at the edge of adaptation. Virology. 2000;270:251-3.
-
(2000)
Virology
, vol.270
, pp. 251-253
-
-
Domingo, E.1
-
11
-
-
30644478836
-
Ouasispecies: Concepts and implications for virology
-
Domingo E, Martin V, Perales C, Grande-Pérez A, García-Arriaza J, Arias A. Ouasispecies: concepts and implications for virology. Curr Top Microbiol Immunol. 2006;299:51-82.
-
(2006)
Curr Top Microbiol Immunol
, vol.299
, pp. 51-82
-
-
Domingo, E.1
Martin, V.2
Perales, C.3
Grande-Pérez, A.4
García-Arriaza, J.5
Arias, A.6
-
12
-
-
31144465690
-
Quasispecies diversity determines pathogenesis through cooperative interactions within a viral population
-
Vignuzzi M, Stone J, Arnold J, Cameron C, Andino R. Quasispecies diversity determines pathogenesis through cooperative interactions within a viral population Nature. 2006;439:344-8.
-
(2006)
Nature
, vol.439
, pp. 344-348
-
-
Vignuzzi, M.1
Stone, J.2
Arnold, J.3
Cameron, C.4
Andino, R.5
-
13
-
-
34547613696
-
Collective properties of evolving molecular quasispecies
-
Stich M, Briones C, Manrubia S. Collective properties of evolving molecular quasispecies. BMC Evol Biol. 2007;7:110.
-
(2007)
BMC Evol Biol
, vol.7
, pp. 110
-
-
Stich, M.1
Briones, C.2
Manrubia, S.3
-
14
-
-
0031923838
-
Interferon resistance of HCV genotype 1b: Relationship tonon-structural 5A gene quasispecies mutations
-
Pawlotsky J, Germanidis G, Neumann A, Pellerin M, Frainais P, Dhumeaux D. Interferon resistance of HCV genotype 1b: relationship tonon-structural 5A gene quasispecies mutations. J Virol. 1998; 72:2795-805.
-
(1998)
J Virol
, vol.72
, pp. 2795-2805
-
-
Pawlotsky, J.1
Germanidis, G.2
Neumann, A.3
Pellerin, M.4
Frainais, P.5
Dhumeaux, D.6
-
15
-
-
33847653427
-
Role of the mutant spectrum in adaptation and replication of West Nile virus
-
Ciota A, Ngo K, Lovelace A, et al. Role of the mutant spectrum in adaptation and replication of West Nile virus. J Gen Virol. 2007; 88:865-74.
-
(2007)
J Gen Virol
, vol.88
, pp. 865-874
-
-
Ciota, A.1
Ngo, K.2
Lovelace, A.3
-
16
-
-
33947590487
-
The West Nile virus mutant spectrum is host-dependant and a determinant of mortality in mice
-
Jerzak G, Bernard K, Kramer L, Shi P-Y, Ebel G. The West Nile virus mutant spectrum is host-dependant and a determinant of mortality in mice. Virology. 2007;360:469-76.
-
(2007)
Virology
, vol.360
, pp. 469-476
-
-
Jerzak, G.1
Bernard, K.2
Kramer, L.3
Shi, P.-Y.4
Ebel, G.5
-
17
-
-
16944365445
-
Antiviral pressure exerted by HIV-1-specific cytotoxic T lymphocytes during primary infection demonstrated by rapid selection of CTL escape virus
-
Borrow P, Lewicki H, Wei X, et al. Antiviral pressure exerted by HIV-1-specific cytotoxic T lymphocytes during primary infection demonstrated by rapid selection of CTL escape virus. Nat Med. 1997;3:205-11.
-
(1997)
Nat Med
, vol.3
, pp. 205-211
-
-
Borrow, P.1
Lewicki, H.2
Wei, X.3
-
18
-
-
0031936597
-
Immunity in chimpanzees chronically infected with HCV: Role of minor quasispecies in reinfection
-
Wyatt C, Andrus L, Brotman B, Huang F, Lee D, Prince A. Immunity in chimpanzees chronically infected with HCV: role of minor quasispecies in reinfection. J Virol. 1998;72:1725-30.
-
(1998)
J Virol
, vol.72
, pp. 1725-1730
-
-
Wyatt, C.1
Andrus, L.2
Brotman, B.3
Huang, F.4
Lee, D.5
Prince, A.6
-
19
-
-
0033059967
-
Reappearance of founder virus sequence in HIV-1-infected patients
-
Karlsson A, Gaines H, Sallberg M, Lindback S, Sonnerborg A. Reappearance of founder virus sequence in HIV-1-infected patients. J Virol. 1999;73:6191-6.
-
(1999)
J Virol
, vol.73
, pp. 6191-6196
-
-
Karlsson, A.1
Gaines, H.2
Sallberg, M.3
Lindback, S.4
Sonnerborg, A.5
-
20
-
-
0033802362
-
Long-term therapy of chronic hepatitis B with lamivudine
-
Lau D, Khokhar M, Doo E, et al. Long-term therapy of chronic hepatitis B with lamivudine. Hepatology. 2000;32:828-34.
-
(2000)
Hepatology
, vol.32
, pp. 828-834
-
-
Lau, D.1
Khokhar, M.2
Doo, E.3
-
21
-
-
0035923671
-
Increased ability for selection of zidovudine resistance in a distinct class of wild-type HIV-1 from drug-naive persons
-
García-Lerma J, Nidtha S, Blumoff K, Weinstock H, Heneine W. Increased ability for selection of zidovudine resistance in a distinct class of wild-type HIV-1 from drug-naive persons. Proc Natl Acad Sci USA. 2001;98:13907-12.
-
(2001)
Proc Natl Acad Sci USA
, vol.98
, pp. 13907-13912
-
-
García-Lerma, J.1
Nidtha, S.2
Blumoff, K.3
Weinstock, H.4
Heneine, W.5
-
22
-
-
31144461409
-
Rapid expression of HIV following activation of latently infected cells
-
Arlen P, Brooks D, Gao L, Vatakis D, Brown H, Zack J. Rapid expression of HIV following activation of latently infected cells. J Virol. 2006;80:1599-603.
-
(2006)
J Virol
, vol.80
, pp. 1599-1603
-
-
Arlen, P.1
Brooks, D.2
Gao, L.3
Vatakis, D.4
Brown, H.5
Zack, J.6
-
23
-
-
33646858570
-
-
Sagar M, Kirkegaard E, Lavreys L, Overbaugh J. Diversity in HIV-1 envelope V1-V3 sequences early in infection reflects sequence diversity throughout the HIV-1 genome but does not predict the extent of sequence diversity during chronic infection. AIDS Res Hum Retroviruses. 2006;22:430-7.
-
Sagar M, Kirkegaard E, Lavreys L, Overbaugh J. Diversity in HIV-1 envelope V1-V3 sequences early in infection reflects sequence diversity throughout the HIV-1 genome but does not predict the extent of sequence diversity during chronic infection. AIDS Res Hum Retroviruses. 2006;22:430-7.
-
-
-
-
24
-
-
33646443202
-
Emergence of CXCR4-using HIV-1 variants in a minority of HIV-1-infected patients following treatment with the CCR5 antagonist Maraviroc is from a pretreatment CXCR4-using virus reservoir
-
Westby M, Lewis M, Whitcomb J, et al. Emergence of CXCR4-using HIV-1 variants in a minority of HIV-1-infected patients following treatment with the CCR5 antagonist Maraviroc is from a pretreatment CXCR4-using virus reservoir. J Virol. 2006;80:4909-20.
-
(2006)
J Virol
, vol.80
, pp. 4909-4920
-
-
Westby, M.1
Lewis, M.2
Whitcomb, J.3
-
25
-
-
0028051329
-
Natural occurrence of drug resistance mutations in the reverse transcriptase of HIV-1 isolates
-
Nájera I, Richman D, Olivares I, et al. Natural occurrence of drug resistance mutations in the reverse transcriptase of HIV-1 isolates. AIDS Res Hum Retroviruses. 1994;10:1479-88.
-
(1994)
AIDS Res Hum Retroviruses
, vol.10
, pp. 1479-1488
-
-
Nájera, I.1
Richman, D.2
Olivares, I.3
-
26
-
-
0028988479
-
Pol gene quasispecies of HIV: Mutations associated with drug resistance in virus from patients undergoing no drug therapy
-
Nájera I, Holguín A, Quiñones-Mateu M, et al. Pol gene quasispecies of HIV: mutations associated with drug resistance in virus from patients undergoing no drug therapy. J Virol. 1995;69:23-31.
-
(1995)
J Virol
, vol.69
, pp. 23-31
-
-
Nájera, I.1
Holguín, A.2
Quiñones-Mateu, M.3
-
27
-
-
0030932864
-
Clonal selection of HIV type 1 variants associated with resistance to foscarnet in vitro: Confirmation by molecular evolutionary analysis
-
Nakano T, Morozumi H, Inuzuka S, et al. Clonal selection of HIV type 1 variants associated with resistance to foscarnet in vitro: confirmation by molecular evolutionary analysis. AIDS Res Hum Retroviruses. 1997;13: 563-73.
-
(1997)
AIDS Res Hum Retroviruses
, vol.13
, pp. 563-573
-
-
Nakano, T.1
Morozumi, H.2
Inuzuka, S.3
-
28
-
-
20644452882
-
Different outcome in the first two patients with an HIV-1 multi-nucleoside drug-resistant T69SSS insertion in Spain
-
Briones C, Soriano V. Different outcome in the first two patients with an HIV-1 multi-nucleoside drug-resistant T69SSS insertion in Spain. Antivir Ther. 1999;4:125-7.
-
(1999)
Antivir Ther
, vol.4
, pp. 125-127
-
-
Briones, C.1
Soriano, V.2
-
29
-
-
0033971425
-
Dynamics of dominance of a dipeptide insertion in reverse transcriptase of HIV-1 from patients subjected to prolongued therapy
-
Briones C, Mas A, Gómez-Mariano G, et al. Dynamics of dominance of a dipeptide insertion in reverse transcriptase of HIV-1 from patients subjected to prolongued therapy. Virus Res 2000; 66:13-26.
-
(2000)
Virus Res
, vol.66
, pp. 13-26
-
-
Briones, C.1
Mas, A.2
Gómez-Mariano, G.3
-
30
-
-
0034861462
-
Analysis of HIV drug-resistant quasispecies in plasma, peripheral blood mononuclear cells and viral isolates from treatment-naive and HAART patients
-
Paolucci S, Baldanti F, Campanini G, et al. Analysis of HIV drug-resistant quasispecies in plasma, peripheral blood mononuclear cells and viral isolates from treatment-naive and HAART patients. J Med Virol. 2001;65: 207-17.
-
(2001)
J Med Virol
, vol.65
, pp. 207-217
-
-
Paolucci, S.1
Baldanti, F.2
Campanini, G.3
-
31
-
-
1842484005
-
Role of minority populations of HIV-1 in the evolution of viral resistance to protease inhibitors
-
Charpentier C, Dwyer D, Mammano F, Lecossier D, Clavel F, Hance A. Role of minority populations of HIV-1 in the evolution of viral resistance to protease inhibitors. J Virol. 2004;78:4234-47.
-
(2004)
J Virol
, vol.78
, pp. 4234-4247
-
-
Charpentier, C.1
Dwyer, D.2
Mammano, F.3
Lecossier, D.4
Clavel, F.5
Hance, A.6
-
32
-
-
19944403922
-
Updated European recommendations for the clinical use of HIV drug resistance testing
-
Vandamme A, Sonnerborg A, Ait-Khaled M, et al. Updated European recommendations for the clinical use of HIV drug resistance testing Antivir Ther. 2004;9:829-48.
-
(2004)
Antivir Ther
, vol.9
, pp. 829-848
-
-
Vandamme, A.1
Sonnerborg, A.2
Ait-Khaled, M.3
-
33
-
-
11844257530
-
Detection of minority populations of HIV-1 expressing the K103N resistance mutations in patients failing nevirapine
-
Lecossier D, Shulman N, Morand-Joubert L, et al. Detection of minority populations of HIV-1 expressing the K103N resistance mutations in patients failing nevirapine. J Acquir Immune Defic Syndr. 2005;38:37-42.
-
(2005)
J Acquir Immune Defic Syndr
, vol.38
, pp. 37-42
-
-
Lecossier, D.1
Shulman, N.2
Morand-Joubert, L.3
-
34
-
-
34147162897
-
Persistence of lamivudine-sansitive HIV-1 quasispecies in the presence of lamivudine in vitro and in vivo
-
Allers K, Knoepfe L, Rauch P, et al. Persistence of lamivudine-sansitive HIV-1 quasispecies in the presence of lamivudine in vitro and in vivo. J Acquir Immune Defic Syndr. 2007;44:377-85.
-
(2007)
J Acquir Immune Defic Syndr
, vol.44
, pp. 377-385
-
-
Allers, K.1
Knoepfe, L.2
Rauch, P.3
-
35
-
-
34547493264
-
Development of drug resistance mutations in patients on HAART: Does competitive advantage drive evolution?
-
Kolber M. Development of drug resistance mutations in patients on HAART: does competitive advantage drive evolution? AIDS Rev. 2007; 9:68-74.
-
(2007)
AIDS Rev
, vol.9
, pp. 68-74
-
-
Kolber, M.1
-
36
-
-
33947525868
-
Detection of minor drug-resistant populations by parallel allele-specific sequencing
-
Cai F, Chen H, Hicks C, Bartlett J, Zhu J, Gao F. Detection of minor drug-resistant populations by parallel allele-specific sequencing. Nat Methods. 2007;4:123-5.
-
(2007)
Nat Methods
, vol.4
, pp. 123-125
-
-
Cai, F.1
Chen, H.2
Hicks, C.3
Bartlett, J.4
Zhu, J.5
Gao, F.6
-
37
-
-
34147097367
-
Rapid selection of drug-resistant HIV-1 during the first months of suppressive ART in treatment-naive patients
-
Metzner K, Allers K, Rauch P, Harrer T. Rapid selection of drug-resistant HIV-1 during the first months of suppressive ART in treatment-naive patients. AIDS. 2007;21:703-11.
-
(2007)
AIDS
, vol.21
, pp. 703-711
-
-
Metzner, K.1
Allers, K.2
Rauch, P.3
Harrer, T.4
-
38
-
-
35748933494
-
Update of the drug resistance mutations in HIV-1: 2007
-
Johnson V, Brun-Vézinet F, Clotet B, et al. Update of the drug resistance mutations in HIV-1: 2007. Top HIV Med. 2007;15:119-25.
-
(2007)
Top HIV Med
, vol.15
, pp. 119-125
-
-
Johnson, V.1
Brun-Vézinet, F.2
Clotet, B.3
-
39
-
-
39549107126
-
Detection of drug-resistant HIV minorities in clinical specimens and therapy failure
-
Louvel S, Battegay M, Vernazza P, et al. Detection of drug-resistant HIV minorities in clinical specimens and therapy failure. HIV Med. 2008;9:133-41.
-
(2008)
HIV Med
, vol.9
, pp. 133-141
-
-
Louvel, S.1
Battegay, M.2
Vernazza, P.3
-
40
-
-
0035173896
-
HIV-1 quasispecies that rebound after discontinuation of HAART are similar to the viral quasispecies present before initiation of therapy
-
Imamichi H, Crandall K, Natarajan V, et al. HIV-1 quasispecies that rebound after discontinuation of HAART are similar to the viral quasispecies present before initiation of therapy. J Infect Dis. 2001;183:36-50.
-
(2001)
J Infect Dis
, vol.183
, pp. 36-50
-
-
Imamichi, H.1
Crandall, K.2
Natarajan, V.3
-
41
-
-
0034987622
-
Changes in HIV-1 populations after treatment interruption in patients failing antiretroviral therapy
-
Hance A, Lemiale V, Izopet J, et al. Changes in HIV-1 populations after treatment interruption in patients failing antiretroviral therapy. J Virol. 2001;75:6410-7.
-
(2001)
J Virol
, vol.75
, pp. 6410-6417
-
-
Hance, A.1
Lemiale, V.2
Izopet, J.3
-
42
-
-
0036655272
-
Origin of HIV-1 quasispecies emerging after antiretroviral treatment interruption in patients with therapeutic failure
-
Kijak G, Simon V, Balfe P. Origin of HIV-1 quasispecies emerging after antiretroviral treatment interruption in patients with therapeutic failure. J Virol. 2002;76:7000-9.
-
(2002)
J Virol
, vol.76
, pp. 7000-7009
-
-
Kijak, G.1
Simon, V.2
Balfe, P.3
-
43
-
-
0037094101
-
Evolution of HIV-1 populations after resumption of therapy following treatment interruption and shift in resistant genotype
-
Izopet J, Souyris C, Hance A, et al. Evolution of HIV-1 populations after resumption of therapy following treatment interruption and shift in resistant genotype. J Infect Dis. 2002;185:1506-10.
-
(2002)
J Infect Dis
, vol.185
, pp. 1506-1510
-
-
Izopet, J.1
Souyris, C.2
Hance, A.3
-
44
-
-
10744223424
-
Emergence of minor populations of HIV-1 carrying the M184V and L90M mutations in subjects undergoing structured treatment interruptions
-
Metzner K, Bonhoeffer S, Fischer M, et al. Emergence of minor populations of HIV-1 carrying the M184V and L90M mutations in subjects undergoing structured treatment interruptions. J Infect Dis. 2003;188: 1433-43.
-
(2003)
J Infect Dis
, vol.188
, pp. 1433-1443
-
-
Metzner, K.1
Bonhoeffer, S.2
Fischer, M.3
-
45
-
-
27744531186
-
Clonal analysis of HIV-1 variants in proviral DNA during treatment interruption in patients with multiple therapy failures
-
Boucher S, Recordon-Pinson P, Neau D, et al. Clonal analysis of HIV-1 variants in proviral DNA during treatment interruption in patients with multiple therapy failures. J Clin Virol. 2005;34:288-94.
-
(2005)
J Clin Virol
, vol.34
, pp. 288-294
-
-
Boucher, S.1
Recordon-Pinson, P.2
Neau, D.3
-
46
-
-
3142762317
-
Intrapartum exposure to nevirapine and subsequent maternal responses to nevirapine-based antiretroviral therapy
-
Jourdain G, Ngo-Giang-Huong N, Le Coeur S, et al. Intrapartum exposure to nevirapine and subsequent maternal responses to nevirapine-based antiretroviral therapy. N Engl J Med. 2007;351: 229-40.
-
(2007)
N Engl J Med
, vol.351
, pp. 229-240
-
-
Jourdain, G.1
Ngo-Giang-Huong, N.2
Le Coeur, S.3
-
47
-
-
33846156885
-
Response to antiretroviral therapy after a single, peripartum dose of nevirapine
-
Lockman S, Shapiro R, Smeaton L, et al. Response to antiretroviral therapy after a single, peripartum dose of nevirapine. N Engl J Med. 2007;356:135-47.
-
(2007)
N Engl J Med
, vol.356
, pp. 135-147
-
-
Lockman, S.1
Shapiro, R.2
Smeaton, L.3
-
48
-
-
0034030441
-
-
Ruiz-Jarabo C, Arias A, Baranowski E, Escarmís C, Domingo E. Memory in viral quasispecies. J Virol. 2000;74:3543-7.
-
Ruiz-Jarabo C, Arias A, Baranowski E, Escarmís C, Domingo E. Memory in viral quasispecies. J Virol. 2000;74:3543-7.
-
-
-
-
49
-
-
0036306528
-
Duration and fitness dependence of quasispecies memory
-
Ruiz-Jarabo C, Arias A, Molina-París C, et al. Duration and fitness dependence of quasispecies memory. J Mol Biol. 2002; 315:285-96.
-
(2002)
J Mol Biol
, vol.315
, pp. 285-296
-
-
Ruiz-Jarabo, C.1
Arias, A.2
Molina-París, C.3
-
50
-
-
0038499539
-
Memory in retroviral quasispecies: Experimental evidence and theoretical model for HIV
-
Briones C, Domingo E, Molina-París C. Memory in retroviral quasispecies: experimental evidence and theoretical model for HIV. J Mol Biol. 2003;331:213-29.
-
(2003)
J Mol Biol
, vol.331
, pp. 213-229
-
-
Briones, C.1
Domingo, E.2
Molina-París, C.3
-
51
-
-
15544367042
-
Protein evolution in viral quasispecies under selective pressure: A thermodynamic and phylogenetic analysis
-
Briones C, Bastolla U. Protein evolution in viral quasispecies under selective pressure: a thermodynamic and phylogenetic analysis. Gene. 2005;347:237-46.
-
(2005)
Gene
, vol.347
, pp. 237-246
-
-
Briones, C.1
Bastolla, U.2
-
52
-
-
33751099319
-
Minority memory genomes can influence the evolution of HIV-1 quasispecies in vivo
-
Briones C, de Vicente A, Molina-París C, Domingo E. Minority memory genomes can influence the evolution of HIV-1 quasispecies in vivo. Gene. 2006;384:129-38.
-
(2006)
Gene
, vol.384
, pp. 129-138
-
-
Briones, C.1
de Vicente, A.2
Molina-París, C.3
Domingo, E.4
-
53
-
-
34250765587
-
Lymphoid reservoirs of antigen-specific memory T helper cells
-
Fazilleau N, Eisenbraun M, Malherbe L, et al. Lymphoid reservoirs of antigen-specific memory T helper cells. Nat Immunol. 2007;8:753-61.
-
(2007)
Nat Immunol
, vol.8
, pp. 753-761
-
-
Fazilleau, N.1
Eisenbraun, M.2
Malherbe, L.3
-
54
-
-
0141862176
-
Synchronous loss of quasispecies memory in parallel viral lineages: A deterministic feature of viral quasispecies
-
Ruíz-Jarabo C, Miller E, Gómez-Mariano G, Domingo E. Synchronous loss of quasispecies memory in parallel viral lineages: a deterministic feature of viral quasispecies. J Mol Biol. 2003;333: 553-63.
-
(2003)
J Mol Biol
, vol.333
, pp. 553-563
-
-
Ruíz-Jarabo, C.1
Miller, E.2
Gómez-Mariano, G.3
Domingo, E.4
-
56
-
-
0028838604
-
Extreme fitness differences in mammalian and insect hosts after continuous replication of vesicular stomatitis virus in sandfly cells
-
Novella I, Clarke D, Quer J, et al. Extreme fitness differences in mammalian and insect hosts after continuous replication of vesicular stomatitis virus in sandfly cells. J Virol. 1995;69:6805-9.
-
(1995)
J Virol
, vol.69
, pp. 6805-6809
-
-
Novella, I.1
Clarke, D.2
Quer, J.3
-
57
-
-
17144461473
-
Multiple molecular pathways for fitness recovery of an RNA virus debilitated by operation of Muller's ratchet
-
Escarmís C, Dávila M, Domingo E. Multiple molecular pathways for fitness recovery of an RNA virus debilitated by operation of Muller's ratchet. J Mol Biol. 1999;285:495-505.
-
(1999)
J Mol Biol
, vol.285
, pp. 495-505
-
-
Escarmís, C.1
Dávila, M.2
Domingo, E.3
-
58
-
-
0028276791
-
The red queen reigns in the kingdom of RNA viruses
-
Clarke D, Duarte E, Elena S, Moya A, Domingo E, Holland J. The red queen reigns in the kingdom of RNA viruses. Proc Natl Acad Sci USA. 1994;91:4821-4.
-
(1994)
Proc Natl Acad Sci USA
, vol.91
, pp. 4821-4824
-
-
Clarke, D.1
Duarte, E.2
Elena, S.3
Moya, A.4
Domingo, E.5
Holland, J.6
-
60
-
-
14444273439
-
Identification of a reservoir for HIV-1 in patients on HAART
-
Finzi D, Hermankova M, Pierson T. Identification of a reservoir for HIV-1 in patients on HAART. Science. 1997;278:1295-300.
-
(1997)
Science
, vol.278
, pp. 1295-1300
-
-
Finzi, D.1
Hermankova, M.2
Pierson, T.3
-
61
-
-
0034040118
-
Reservoirs for HIV-1: Mechanisms for viral persistence in the presence of antiviral immune responses and antiretroviral therapy
-
Pierson T, McArthur J, Siliciano R. Reservoirs for HIV-1: mechanisms for viral persistence in the presence of antiviral immune responses and antiretroviral therapy. Annu Rev Immunol. 2000; 18:665-708.
-
(2000)
Annu Rev Immunol
, vol.18
, pp. 665-708
-
-
Pierson, T.1
McArthur, J.2
Siliciano, R.3
-
62
-
-
0036176509
-
The challenge of viral reservoirs in HIV-1 infection
-
Blankson J, Persaud D, Siciliano R. The challenge of viral reservoirs in HIV-1 infection. Annu Rev Med. 2002;53:557-93.
-
(2002)
Annu Rev Med
, vol.53
, pp. 557-593
-
-
Blankson, J.1
Persaud, D.2
Siciliano, R.3
-
63
-
-
33646184547
-
HAART-persistent HIV-1 latent reservoirs: Their origin, mechanisms of stability and potential strategies for eradication
-
Kulkosky J, Bray S. HAART-persistent HIV-1 latent reservoirs: their origin, mechanisms of stability and potential strategies for eradication. Curr HIV Res. 2006;4:199-208.
-
(2006)
Curr HIV Res
, vol.4
, pp. 199-208
-
-
Kulkosky, J.1
Bray, S.2
-
64
-
-
39349108884
-
Dynamics of total, linear nonintegrated, and integrated HIV-1 DNA in vivo and in vitro
-
Koelsch K, Liu L, Haubrich R, et al. Dynamics of total, linear nonintegrated, and integrated HIV-1 DNA in vivo and in vitro. J Infect Dis. 2008;197:411-9.
-
(2008)
J Infect Dis
, vol.197
, pp. 411-419
-
-
Koelsch, K.1
Liu, L.2
Haubrich, R.3
-
66
-
-
0004167789
-
-
Baltimore and London: The Johns Hopkins University Press
-
Crandall K. The Evolution of HIV. Baltimore and London: The Johns Hopkins University Press. 1999.
-
(1999)
The Evolution of HIV
-
-
Crandall, K.1
-
67
-
-
0035524975
-
Intracellular trafficking of retroviral genomes during the early phase of infection: Viral exploitation of cellular pathways
-
Goff S. Intracellular trafficking of retroviral genomes during the early phase of infection: viral exploitation of cellular pathways. J Gene Med. 2001;3:517-28.
-
(2001)
J Gene Med
, vol.3
, pp. 517-528
-
-
Goff, S.1
-
68
-
-
0036188864
-
In vivo HIV-1 compartmentalization: Drug resistance-associated mutation distribution
-
Devereux HL, Burke A, Lee CA, Johnson, MA. In vivo HIV-1 compartmentalization: drug resistance-associated mutation distribution. J Med Virol. 2002;66:8-12.
-
(2002)
J Med Virol
, vol.66
, pp. 8-12
-
-
Devereux, H.L.1
Burke, A.2
Lee, C.A.3
Johnson, M.A.4
-
69
-
-
0036720438
-
Persistence of wild-type virus and lack of temporal structure in the latent reservoir for HIV-1 in pediatric patients with extensive antiretroviral exposure
-
Ruff C, Ray S, Kwon P, et al. Persistence of wild-type virus and lack of temporal structure in the latent reservoir for HIV-1 in pediatric patients with extensive antiretroviral exposure. J Virol. 2002; 76:9481-92.
-
(2002)
J Virol
, vol.76
, pp. 9481-9492
-
-
Ruff, C.1
Ray, S.2
Kwon, P.3
-
70
-
-
21244496808
-
Antiretroviral compounds: Mechanisms underlying failure of HAART to eradicate HIV-1
-
Shehu-Xhilaga M, Tachedjian G, Crowe S, Kedzierska K. Antiretroviral compounds: mechanisms underlying failure of HAART to eradicate HIV-1. Curr Med Chem. 2005;12:1705-19.
-
(2005)
Curr Med Chem
, vol.12
, pp. 1705-1719
-
-
Shehu-Xhilaga, M.1
Tachedjian, G.2
Crowe, S.3
Kedzierska, K.4
-
71
-
-
0037436291
-
Persistence of drug-resistant HIV-1 after a structured treatment interruption and its impact on treatment response
-
Deeks S, Grant R, Wrin T, et al. Persistence of drug-resistant HIV-1 after a structured treatment interruption and its impact on treatment response. AIDS. 2003;17:361-70.
-
(2003)
AIDS
, vol.17
, pp. 361-370
-
-
Deeks, S.1
Grant, R.2
Wrin, T.3
-
72
-
-
0033821131
-
Prevalence of drug-resistant HIV-1 genotypes in heavily pretreated patients on current virologic failure
-
Briones C, Soriano V, González-Lahoz J. Prevalence of drug-resistant HIV-1 genotypes in heavily pretreated patients on current virologic failure. AIDS. 2000;14:1659-60.
-
(2000)
AIDS
, vol.14
, pp. 1659-1660
-
-
Briones, C.1
Soriano, V.2
González-Lahoz, J.3
-
73
-
-
0030840407
-
Mutations in the pol gene of HIV-1 in infected patients receiving didanosine and hydroxyurea combination therapy
-
De Antoni A, Foli A, Lisziewicz J, Lori F. Mutations in the pol gene of HIV-1 in infected patients receiving didanosine and hydroxyurea combination therapy. J Infect Dis. 1997;176:899-903.
-
(1997)
J Infect Dis
, vol.176
, pp. 899-903
-
-
De Antoni, A.1
Foli, A.2
Lisziewicz, J.3
Lori, F.4
-
74
-
-
0034630898
-
Multidrug resistance genotypes (insertions in the β3-β4 finger subdomain and MDR mutations) of HIV-1 reverse transcriptase from extremely treated patients: Incidence and association with other resistance mutations
-
Tamalet C, Yahi N, Tourrès C, et al. Multidrug resistance genotypes (insertions in the β3-β4 finger subdomain and MDR mutations) of HIV-1 reverse transcriptase from extremely treated patients: Incidence and association with other resistance mutations. Virology. 2000;270:310-6.
-
(2000)
Virology
, vol.270
, pp. 310-316
-
-
Tamalet, C.1
Yahi, N.2
Tourrès, C.3
-
75
-
-
0032533207
-
A 6-base pair insert in the reverse transcriptase gene of HIV-1 confers resistance to multiple nucleoside inhibitors
-
Winters M, Coolley K, Girard Y, et al. A 6-base pair insert in the reverse transcriptase gene of HIV-1 confers resistance to multiple nucleoside inhibitors. J Clin Invest. 1998;102:1769-75.
-
(1998)
J Clin Invest
, vol.102
, pp. 1769-1775
-
-
Winters, M.1
Coolley, K.2
Girard, Y.3
-
76
-
-
0034329473
-
Role of a dipeptide insertion between codons 69 and 70 of HIV-1 reverse transcriptase in the mechanism of AZT resistance
-
Mas A, Parera M, Briones C, et al. Role of a dipeptide insertion between codons 69 and 70 of HIV-1 reverse transcriptase in the mechanism of AZT resistance, EMBO J. 2000;19:5752-61.
-
(2000)
EMBO J
, vol.19
, pp. 5752-5761
-
-
Mas, A.1
Parera, M.2
Briones, C.3
-
77
-
-
0033914367
-
Relationship between preexisting viral reservoirs and the re-emergence of plasma viremia after discontinuation of HAART
-
Chun T, Davey R, Ostrowski M, et al. Relationship between preexisting viral reservoirs and the re-emergence of plasma viremia after discontinuation of HAART. Nat Med. 2000;6:757-61.
-
(2000)
Nat Med
, vol.6
, pp. 757-761
-
-
Chun, T.1
Davey, R.2
Ostrowski, M.3
-
78
-
-
0036147338
-
Viral dynamics during structured treatment interruptions of chronic HIV-1 infection
-
Frost S, Martínez-Picado J, Ruiz L, Clotet B, Brown A. Viral dynamics during structured treatment interruptions of chronic HIV-1 infection. J Virol. 2002;76:968-79.
-
(2002)
J Virol
, vol.76
, pp. 968-979
-
-
Frost, S.1
Martínez-Picado, J.2
Ruiz, L.3
Clotet, B.4
Brown, A.5
-
79
-
-
27744473506
-
Evolution of HIV resistance during treatment interruption in experienced patients and after restarting a new therapy
-
Balduin M, Sierra S, Däumer MP, et al. Evolution of HIV resistance during treatment interruption in experienced patients and after restarting a new therapy. J Clin Virol. 2005;34:277-87.
-
(2005)
J Clin Virol
, vol.34
, pp. 277-287
-
-
Balduin, M.1
Sierra, S.2
Däumer, M.P.3
-
80
-
-
0028273314
-
Combination therapy with zidovudine and didanosine selects for drug-resistant HIV-1 strains with unique patterns of pol gene mutations
-
Shafer R, Kozal M, Winters M, et al. Combination therapy with zidovudine and didanosine selects for drug-resistant HIV-1 strains with unique patterns of pol gene mutations. J Infect Dis. 1994;169:722-9.
-
(1994)
J Infect Dis
, vol.169
, pp. 722-729
-
-
Shafer, R.1
Kozal, M.2
Winters, M.3
-
81
-
-
0028940084
-
Emergence of HIV-1 variants with resistance to multiple dideoxynucleosides in patients receiving therapy with dideoxynucleosides
-
Shirasaka T, Kavlick M, Ueno T, et al. Emergence of HIV-1 variants with resistance to multiple dideoxynucleosides in patients receiving therapy with dideoxynucleosides. Proc Natl Acad Sci USA. 1995;92: 2398-402.
-
(1995)
Proc Natl Acad Sci USA
, vol.92
, pp. 2398-2402
-
-
Shirasaka, T.1
Kavlick, M.2
Ueno, T.3
-
82
-
-
0028784434
-
Enzymatic characterization of HIV-1 reverse transcriptase resistant to multiple 2′,3′-dideoxynucleoside 5′-triphosphates
-
Ueno T, Shirasaka T, Mitsuya H. Enzymatic characterization of HIV-1 reverse transcriptase resistant to multiple 2′,3′-dideoxynucleoside 5′-triphosphates. J Biol Chem. 1995;270:23605-11.
-
(1995)
J Biol Chem
, vol.270
, pp. 23605-23611
-
-
Ueno, T.1
Shirasaka, T.2
Mitsuya, H.3
-
83
-
-
0033064963
-
Comparative fitness of multi-dideoxynucleoside-resistant HIV-1 in an in vitro competitive HIV-1 replication assay
-
Kosalaraksa P, Kavlick M, Maroun V, Le R, Mitsuya H. Comparative fitness of multi-dideoxynucleoside-resistant HIV-1 in an in vitro competitive HIV-1 replication assay. J Virol. 1999;73:5356-63.
-
(1999)
J Virol
, vol.73
, pp. 5356-5363
-
-
Kosalaraksa, P.1
Kavlick, M.2
Maroun, V.3
Le, R.4
Mitsuya, H.5
-
84
-
-
0029072721
-
Exponential increases of RNA virus fitness during large population transmissions
-
Novella I, Duarte E, Elena S, Moya A, Domingo E, Holland J. Exponential increases of RNA virus fitness during large population transmissions. Proc Natl Acad Sci USA. 1995;92:5841-4.
-
(1995)
Proc Natl Acad Sci USA
, vol.92
, pp. 5841-5844
-
-
Novella, I.1
Duarte, E.2
Elena, S.3
Moya, A.4
Domingo, E.5
Holland, J.6
-
85
-
-
43049095987
-
HIV-1 reverse transcriptase inhibitor resistance mutations and fitness: A view from the clinic and ex vivo
-
Martinez-Picado J, Martínez M. HIV-1 reverse transcriptase inhibitor resistance mutations and fitness: A view from the clinic and ex vivo. Virus Res. 2008;134:104-23.
-
(2008)
Virus Res
, vol.134
, pp. 104-123
-
-
Martinez-Picado, J.1
Martínez, M.2
-
86
-
-
11844266617
-
Can modulation of viral fitness represent a target for anti-HIV-1 strategies?
-
Clementi M. Can modulation of viral fitness represent a target for anti-HIV-1 strategies? New Microbiol. 2004;27:207-14.
-
(2004)
New Microbiol
, vol.27
, pp. 207-214
-
-
Clementi, M.1
-
87
-
-
0028952146
-
HIV population dynamics in vivo: Implications for genetic variation, pathogenesis and therapy
-
Coffin J. HIV population dynamics in vivo: implications for genetic variation, pathogenesis and therapy Science. 1995;267:483-9.
-
(1995)
Science
, vol.267
, pp. 483-489
-
-
Coffin, J.1
-
88
-
-
0033037358
-
Worldwide evaluation of DNA sequencing approaches for identification of drug resistance mutations in HIV-1 reverse transcriptase
-
Schuurman R, Demeter L, Reichelderfer P, Tijnagel J, de Groot T, Boucher C. Worldwide evaluation of DNA sequencing approaches for identification of drug resistance mutations in HIV-1 reverse transcriptase. J Clin Microbiol. 1999;37:2291-6.
-
(1999)
J Clin Microbiol
, vol.37
, pp. 2291-2296
-
-
Schuurman, R.1
Demeter, L.2
Reichelderfer, P.3
Tijnagel, J.4
de Groot, T.5
Boucher, C.6
-
89
-
-
0033926883
-
HIV-1 resistance genotyping by sequencing produces inconsistent results for mixed viral populations
-
Frater A, Chaput C, Weber J, McClure M. HIV-1 resistance genotyping by sequencing produces inconsistent results for mixed viral populations. AIDS. 2000;14:1473-5.
-
(2000)
AIDS
, vol.14
, pp. 1473-1475
-
-
Frater, A.1
Chaput, C.2
Weber, J.3
McClure, M.4
-
90
-
-
0036222716
-
Genotyping testing for HIV-1 drug resistance
-
Shafer RW. Genotyping testing for HIV-1 drug resistance. Clin Microbiol Rev. 2002;15:247-77.
-
(2002)
Clin Microbiol Rev
, vol.15
, pp. 247-277
-
-
Shafer, R.W.1
-
91
-
-
19944428265
-
Multiple, linked HIV-1 drug resistance mutations in treatment-experienced patients are missed by standard genotype analysis
-
Palmer S, Kearney M, Mandarelly F, et al. Multiple, linked HIV-1 drug resistance mutations in treatment-experienced patients are missed by standard genotype analysis. J Clin Microbiol. 2005;43:406-13.
-
(2005)
J Clin Microbiol
, vol.43
, pp. 406-413
-
-
Palmer, S.1
Kearney, M.2
Mandarelly, F.3
-
92
-
-
0031046755
-
Line probe assay for rapid detection of drug-selected mutations in the HIV-1 reverse transcriptase gene
-
Stuyver L, Wyseur A, Rombout A. Line probe assay for rapid detection of drug-selected mutations in the HIV-1 reverse transcriptase gene. Antimicrob Agents Chemother. 1997;41:284-91.
-
(1997)
Antimicrob Agents Chemother
, vol.41
, pp. 284-291
-
-
Stuyver, L.1
Wyseur, A.2
Rombout, A.3
-
93
-
-
0032733696
-
Phenotypic assays and sequencing are less sensitive than point mutation assays for detection of resistance in mixed HIV-1 genotypic populations
-
van Laethem K, van Vaerenbergh K, Schmit J, et al. Phenotypic assays and sequencing are less sensitive than point mutation assays for detection of resistance in mixed HIV-1 genotypic populations. J Acquir Immune Defic Syndr. 1999;22:107-18.
-
(1999)
J Acquir Immune Defic Syndr
, vol.22
, pp. 107-118
-
-
van Laethem, K.1
van Vaerenbergh, K.2
Schmit, J.3
-
94
-
-
0033900351
-
Comparative evaluation of three HIV genotyping systems: The HIV-GenotypR Method, the HIV PRT GeneChip Assay, and the HIV-1 RT Line Probe Assay
-
Wilson J, Bean P, Robins T, Graziano F, Persing D. Comparative evaluation of three HIV genotyping systems: the HIV-GenotypR Method, the HIV PRT GeneChip Assay, and the HIV-1 RT Line Probe Assay. J Clin Microbiol. 2000;38:3022-28.
-
(2000)
J Clin Microbiol
, vol.38
, pp. 3022-3028
-
-
Wilson, J.1
Bean, P.2
Robins, T.3
Graziano, F.4
Persing, D.5
-
95
-
-
33746191676
-
Blinded, multicenter comparison of methods to detect a drug-resistant mutant of HIV-1 at low frequency
-
Halvas E, Aldrovandi C, Balfe P, et al. Blinded, multicenter comparison of methods to detect a drug-resistant mutant of HIV-1 at low frequency. J Clin Microbiol. 2006;44:2612-4.
-
(2006)
J Clin Microbiol
, vol.44
, pp. 2612-2614
-
-
Halvas, E.1
Aldrovandi, C.2
Balfe, P.3
-
96
-
-
38149080706
-
Independent evolution of hypervariable regions of HIV-1 gp120: V4 as a swarm of N-Linked glycosylation variants
-
Castro E, Bélair M, Rizzardi G, Bart P, Pantaleo G, Graziosi C. Independent evolution of hypervariable regions of HIV-1 gp120: V4 as a swarm of N-Linked glycosylation variants. AIDS Res Hum Retroviruses. 2008; 24:106-13.
-
(2008)
AIDS Res Hum Retroviruses
, vol.24
, pp. 106-113
-
-
Castro, E.1
Bélair, M.2
Rizzardi, G.3
Bart, P.4
Pantaleo, G.5
Graziosi, C.6
-
97
-
-
35348887750
-
Characterization of minority subpopulations in the mutant spectrum of HIV-1 by successive specific amplifications
-
García-Arriaza J, Domingo E, Briones C. Characterization of minority subpopulations in the mutant spectrum of HIV-1 by successive specific amplifications. Virus Res. 2007;129:123-34.
-
(2007)
Virus Res
, vol.129
, pp. 123-134
-
-
García-Arriaza, J.1
Domingo, E.2
Briones, C.3
-
98
-
-
0031975949
-
Oligonucleotide ligation assay for detecting mutations in the HIV-1 pol gene that are associated with resistance to zidovudine, didanosine, and lamivudine
-
Edelstein R, Nickerson D, Tobe V, Manns-Arcuino L, Frenkel L. Oligonucleotide ligation assay for detecting mutations in the HIV-1 pol gene that are associated with resistance to zidovudine, didanosine, and lamivudine. J Clin Microbiol. 1998;36:569-72.
-
(1998)
J Clin Microbiol
, vol.36
, pp. 569-572
-
-
Edelstein, R.1
Nickerson, D.2
Tobe, V.3
Manns-Arcuino, L.4
Frenkel, L.5
-
99
-
-
3843061329
-
Comparison of oligonucleotide ligation assay and consensus sequencing for detection of drug-resistant mutants of HIV-1 in peripheral blood mononuclear cells and plasma
-
Ellis G, Mahalanabis M, Beck I, et al. Comparison of oligonucleotide ligation assay and consensus sequencing for detection of drug-resistant mutants of HIV-1 in peripheral blood mononuclear cells and plasma. J Clin Microbiol. 2004;42:3670-4.
-
(2004)
J Clin Microbiol
, vol.42
, pp. 3670-3674
-
-
Ellis, G.1
Mahalanabis, M.2
Beck, I.3
-
100
-
-
0033797822
-
Viral genome characterization by the heteroduplex mobility and heteroduplex tracking assays
-
Barlow K, Green J, Clewley J. Viral genome characterization by the heteroduplex mobility and heteroduplex tracking assays. Rev Med Virol. 2000;10:321-35.
-
(2000)
Rev Med Virol
, vol.10
, pp. 321-335
-
-
Barlow, K.1
Green, J.2
Clewley, J.3
-
101
-
-
0035793118
-
A multiple-site-specific heteroduplex tracking assay as a tool for the study of viral population dynamics
-
Resch W, Parkin N, Stuelke E, Watkins T, Swanstrom R. A multiple-site-specific heteroduplex tracking assay as a tool for the study of viral population dynamics. Proc Natl Acad Sci USA. 2001;98: 176-81.
-
(2001)
Proc Natl Acad Sci USA
, vol.98
, pp. 176-181
-
-
Resch, W.1
Parkin, N.2
Stuelke, E.3
Watkins, T.4
Swanstrom, R.5
-
102
-
-
0034984220
-
Population genetic analysis of the protease locus of HIV-1 quasispecies undergoing drug selection, using a denaturing gradient-heteroduplex tracking assay
-
Doukhan L, Delwart E. Population genetic analysis of the protease locus of HIV-1 quasispecies undergoing drug selection, using a denaturing gradient-heteroduplex tracking assay. J Virol. 2001;75: 6729-36.
-
(2001)
J Virol
, vol.75
, pp. 6729-6736
-
-
Doukhan, L.1
Delwart, E.2
-
103
-
-
2942676469
-
Sequencing-based detection of low-frequency HIV-1 drug-resistant mutants by an RNA/DNA heteroduplex generator-tracking assay
-
Kapoor A, Jones M, Shafer R, Rhee S-Y, Kazanjian P, Delwart E. Sequencing-based detection of low-frequency HIV-1 drug-resistant mutants by an RNA/DNA heteroduplex generator-tracking assay. J Virol. 2004;78:7112-23.
-
(2004)
J Virol
, vol.78
, pp. 7112-7123
-
-
Kapoor, A.1
Jones, M.2
Shafer, R.3
Rhee, S.-Y.4
Kazanjian, P.5
Delwart, E.6
-
104
-
-
1842484005
-
Role of minority populations of HIV-1 in the evolution of viral resistance to protease inhibitors
-
Charpentier C, Dwyer D, Mammano F, Lecossier D, Clavel F, Hance A. Role of minority populations of HIV-1 in the evolution of viral resistance to protease inhibitors. J Virol. 2004;78:4234-7.
-
(2004)
J Virol
, vol.78
, pp. 4234-4237
-
-
Charpentier, C.1
Dwyer, D.2
Mammano, F.3
Lecossier, D.4
Clavel, F.5
Hance, A.6
-
105
-
-
18944387366
-
Discrimination of lamivudine resistant minor HIV-1 variants by selective real-time PCR
-
Bergroth T, Sonnerborg A, Yun Z. Discrimination of lamivudine resistant minor HIV-1 variants by selective real-time PCR. J Virol Methods. 2005; 127:100-7.
-
(2005)
J Virol Methods
, vol.127
, pp. 100-107
-
-
Bergroth, T.1
Sonnerborg, A.2
Yun, Z.3
-
106
-
-
27544452984
-
Detection of minor populations of drug-resistant HIV-1 in acute seroconverters
-
Metzner K, Raunch P, Walter H, et al. Detection of minor populations of drug-resistant HIV-1 in acute seroconverters. AIDS. 2005; 19:1819-25.
-
(2005)
AIDS
, vol.19
, pp. 1819-1825
-
-
Metzner, K.1
Raunch, P.2
Walter, H.3
-
107
-
-
24044455869
-
Genome sequencing in micro-fabricated high-density picolitre reactors
-
Margulies M, Egholm M, Altman W, et al. Genome sequencing in micro-fabricated high-density picolitre reactors. Nature. 2005;437:376-80.
-
(2005)
Nature
, vol.437
, pp. 376-380
-
-
Margulies, M.1
Egholm, M.2
Altman, W.3
-
108
-
-
5444249657
-
Pyrosequencing for detection of lamivudine-resistant HBV
-
Lindström A, Odeberg J, Albert J. Pyrosequencing for detection of lamivudine-resistant HBV. J Clin Microbiol. 2004;42:4788-95.
-
(2004)
J Clin Microbiol
, vol.42
, pp. 4788-4795
-
-
Lindström, A.1
Odeberg, J.2
Albert, J.3
-
109
-
-
35649009345
-
Detection and typing of human pathogenic hantaviruses by real-time reverse transcription-PCR and pyrosequencing
-
Kramski M, Meisel H, Klempa B, Krüger D, Pauli G, Nitsche A. Detection and typing of human pathogenic hantaviruses by real-time reverse transcription-PCR and pyrosequencing. Clin Chem. 2007;53:1899-905.
-
(2007)
Clin Chem
, vol.53
, pp. 1899-1905
-
-
Kramski, M.1
Meisel, H.2
Klempa, B.3
Krüger, D.4
Pauli, G.5
Nitsche, A.6
-
110
-
-
34447271704
-
Surveillance of resistance to adamantanes among influenza A(H3N2) and A(H1N1) viruses isolated worldwide
-
Deyde V, Xu X, Bright R, et al. Surveillance of resistance to adamantanes among influenza A(H3N2) and A(H1N1) viruses isolated worldwide. J Infect Dis. 2007;196:249-57.
-
(2007)
J Infect Dis
, vol.196
, pp. 249-257
-
-
Deyde, V.1
Xu, X.2
Bright, R.3
-
111
-
-
40449115382
-
A new arenavirus in a cluster of fatal transplant-associated diseases
-
Palacios G, Druce J, Du L, et al. A new arenavirus in a cluster of fatal transplant-associated diseases. N Engl J Med. 2008;358:991-8.
-
(2008)
N Engl J Med
, vol.358
, pp. 991-998
-
-
Palacios, G.1
Druce, J.2
Du, L.3
-
112
-
-
0035129508
-
Monitoring resistance to HIV-1 protease inhibitors by pyrosequencing
-
O'Meara D, Wilbe K, Leitner T, Hejdeman B, Albert J, Lundeberg J. Monitoring resistance to HIV-1 protease inhibitors by pyrosequencing. J Clin Microbiol. 2001;39:464-73.
-
(2001)
J Clin Microbiol
, vol.39
, pp. 464-473
-
-
O'Meara, D.1
Wilbe, K.2
Leitner, T.3
Hejdeman, B.4
Albert, J.5
Lundeberg, J.6
-
113
-
-
34547635063
-
HIV integration site selection: Analysis by massively parallel pyrosequencing reveals association with epigenetic modifications
-
Wang G, Ciuffi A, Leipzig J, Berry C, Bushman F. HIV integration site selection: analysis by massively parallel pyrosequencing reveals association with epigenetic modifications. Genome Res. 2007;17:1186-94.
-
(2007)
Genome Res
, vol.17
, pp. 1186-1194
-
-
Wang, G.1
Ciuffi, A.2
Leipzig, J.3
Berry, C.4
Bushman, F.5
-
114
-
-
34547829263
-
DNA bar coding and pyrosequencing to identify rare HIV drug resistance mutations
-
Hoffmann C, Minkah N, Leipzig J, et al. DNA bar coding and pyrosequencing to identify rare HIV drug resistance mutations. Nucleic Acids Res. 2007;35:e91.
-
(2007)
Nucleic Acids Res
, vol.35
-
-
Hoffmann, C.1
Minkah, N.2
Leipzig, J.3
-
115
-
-
34547643929
-
Characterization of mutation spectra with ultra-deep pyrosequencing: Application to HIV-1 drug resistance
-
Wang C, Mitsuya Y, Gharizadeh B, Ronaghi M, Shafer R. Characterization of mutation spectra with ultra-deep pyrosequencing: application to HIV-1 drug resistance. Genome Res. 2007;17: 1195-201.
-
(2007)
Genome Res
, vol.17
, pp. 1195-1201
-
-
Wang, C.1
Mitsuya, Y.2
Gharizadeh, B.3
Ronaghi, M.4
Shafer, R.5
-
116
-
-
44949250815
-
-
Eriksson N, Pachter L, Mitsuya Y, et al. Viral population estimation using pyrosequencing. PLoS Comput Biol. 2008;4:e1000074.
-
Eriksson N, Pachter L, Mitsuya Y, et al. Viral population estimation using pyrosequencing. PLoS Comput Biol. 2008;4:e1000074.
-
-
-
-
118
-
-
33745926178
-
Sensitive mutation detection in heterogeneous cancer specimens by massively parallel picoliter reactor sequencing
-
Thomas R, Nickerson E, Simons J, et al. Sensitive mutation detection in heterogeneous cancer specimens by massively parallel picoliter reactor sequencing. Nat Med. 2006;12:852-5.
-
(2006)
Nat Med
, vol.12
, pp. 852-855
-
-
Thomas, R.1
Nickerson, E.2
Simons, J.3
-
119
-
-
0028241481
-
Arrays of complementary oligonucleotides for analyzing the hybridization behavior of nucleic acids
-
Southern E. Arrays of complementary oligonucleotides for analyzing the hybridization behavior of nucleic acids. Nucleic Acids Res. 1994;22: 1368-72.
-
(1994)
Nucleic Acids Res
, vol.22
, pp. 1368-1372
-
-
Southern, E.1
-
120
-
-
0031895247
-
Evolutionary sequence comparisons using high-density oligonucleotide arrays
-
Hacia J, Makalowski W, Edgemon K, et al. Evolutionary sequence comparisons using high-density oligonucleotide arrays. Nat Gen. 1998;18: 155-8.
-
(1998)
Nat Gen
, vol.18
, pp. 155-158
-
-
Hacia, J.1
Makalowski, W.2
Edgemon, K.3
-
122
-
-
13944271437
-
Physicochemical perspectives on DNA microarray and biosensor technologies
-
Levicky R, Horgan A. Physicochemical perspectives on DNA microarray and biosensor technologies. Trends Biotechnol. 2005;3:143-9.
-
(2005)
Trends Biotechnol
, vol.3
, pp. 143-149
-
-
Levicky, R.1
Horgan, A.2
-
123
-
-
0842348309
-
Chips with everything: DNA microarrays in infectious diseases
-
Bryant P, Venter D, Robins-Browne R, Curtis N, et al. Chips with everything: DNA microarrays in infectious diseases. Lancet Infect Dis. 2004;4:100-11.
-
(2004)
Lancet Infect Dis
, vol.4
, pp. 100-111
-
-
Bryant, P.1
Venter, D.2
Robins-Browne, R.3
Curtis, N.4
-
124
-
-
0035126736
-
Typing and subtyping influenza virus using DNA microarrays and multiplex reverse transcriptase PCR
-
Li J, Chen S, Evans DH. Typing and subtyping influenza virus using DNA microarrays and multiplex reverse transcriptase PCR. J Clin Microbiol. 2001;39:696-704.
-
(2001)
J Clin Microbiol
, vol.39
, pp. 696-704
-
-
Li, J.1
Chen, S.2
Evans, D.H.3
-
125
-
-
0141923868
-
Molecular detection and identification of influenza viruses by oligonucleotide microarray hybridization
-
Sengupta S, Onodera K, Lai A, Melcher U. Molecular detection and identification of influenza viruses by oligonucleotide microarray hybridization. J Clin Microbiol. 2003;41:4542-50.
-
(2003)
J Clin Microbiol
, vol.41
, pp. 4542-4550
-
-
Sengupta, S.1
Onodera, K.2
Lai, A.3
Melcher, U.4
-
126
-
-
10844289479
-
Mapping of genomic segments of influenza B virus strains by an oligonucleotide microarray method
-
Ivshina A, Vodeiko G, Kuznetsov V, et al. Mapping of genomic segments of influenza B virus strains by an oligonucleotide microarray method. J Clin Microb. 2004;42:5793-801.
-
(2004)
J Clin Microb
, vol.42
, pp. 5793-5801
-
-
Ivshina, A.1
Vodeiko, G.2
Kuznetsov, V.3
-
127
-
-
0142195776
-
A combined oligonucleotide and protein microarray for the co-detection of nucleic acids and antibodies associated with HIV, HBV, and HCV infections
-
Perrin A, Duracher D, Perret M, Cleuziat P, Mandrand B. A combined oligonucleotide and protein microarray for the co-detection of nucleic acids and antibodies associated with HIV, HBV, and HCV infections. Anal Biochem. 2003;322:148-55.
-
(2003)
Anal Biochem
, vol.322
, pp. 148-155
-
-
Perrin, A.1
Duracher, D.2
Perret, M.3
Cleuziat, P.4
Mandrand, B.5
-
128
-
-
33644783581
-
Genotyping of HBV by oligonucleotides microarray
-
Song Y, Dai E, Wang J, et al. Genotyping of HBV by oligonucleotides microarray. Mol Cell Probes. 2006;20:121-7.
-
(2006)
Mol Cell Probes
, vol.20
, pp. 121-127
-
-
Song, Y.1
Dai, E.2
Wang, J.3
-
129
-
-
34047178960
-
Microarray multiplex assay for the simultaneous detection and discrimination of HBV, HCV, and HIV-1 viruses in human blood samples
-
Hsia C, Chizhikov V, Yang A, et al. Microarray multiplex assay for the simultaneous detection and discrimination of HBV, HCV, and HIV-1 viruses in human blood samples. Biochem Biophys Res Commun. 2007; 356:1017-23.
-
(2007)
Biochem Biophys Res Commun
, vol.356
, pp. 1017-1023
-
-
Hsia, C.1
Chizhikov, V.2
Yang, A.3
-
130
-
-
0036308528
-
Detection and genotyping of human group A rotaviruses by oligonucleotide microarray hybridization
-
Chizhikov V, Wagner M, Ivshina A, Hoshino Y, Kapikian A, Chumakov K. Detection and genotyping of human group A rotaviruses by oligonucleotide microarray hybridization. J Clin Microbiol. 2002; 40:2398-407.
-
(2002)
J Clin Microbiol
, vol.40
, pp. 2398-2407
-
-
Chizhikov, V.1
Wagner, M.2
Ivshina, A.3
Hoshino, Y.4
Kapikian, A.5
Chumakov, K.6
-
131
-
-
18744377158
-
Microarray-based detection and genotyping of viral pathogens
-
Wang D, Coscoy L, Zylberberg M, et al. Microarray-based detection and genotyping of viral pathogens. Proc Natl Acad Sci USA. 2002;99: 15687-92.
-
(2002)
Proc Natl Acad Sci USA
, vol.99
, pp. 15687-15692
-
-
Wang, D.1
Coscoy, L.2
Zylberberg, M.3
-
132
-
-
2942527326
-
Oligonucleotide microarrays in microbial diagnostics
-
Bodrossy L, Sessitsch A. Oligonucleotide microarrays in microbial diagnostics. Curr Opin Microbiol. 2004;7:245-54.
-
(2004)
Curr Opin Microbiol
, vol.7
, pp. 245-254
-
-
Bodrossy, L.1
Sessitsch, A.2
-
133
-
-
2442695032
-
Generation of a DNA microarray for determination of E6 natural variants of human papillomavirus type 16
-
Gemignani F, Landi S, Chabrier A, et al. Generation of a DNA microarray for determination of E6 natural variants of human papillomavirus type 16. J Virol Methods. 2004;119:95-102.
-
(2004)
J Virol Methods
, vol.119
, pp. 95-102
-
-
Gemignani, F.1
Landi, S.2
Chabrier, A.3
-
134
-
-
33745493613
-
Microarray-based identification of antigenic variants of foot-and-mouth disease virus: A bioinformatics quality assessment
-
Martín V, Perales C, Abia D, Ortiz A, Domingo E, Briones C. Microarray-based identification of antigenic variants of foot-and-mouth disease virus: a bioinformatics quality assessment. BMC Genomics. 2006;7:117.
-
(2006)
BMC Genomics
, vol.7
, pp. 117
-
-
Martín, V.1
Perales, C.2
Abia, D.3
Ortiz, A.4
Domingo, E.5
Briones, C.6
-
135
-
-
0042424622
-
Microarray analysis of evolution of RNA viruses: Evidence of circulation of virulent highly divergent vaccine-derived polioviruses
-
Cherkasova E, Laassri M, Chizhikov V, et al. Microarray analysis of evolution of RNA viruses: evidence of circulation of virulent highly divergent vaccine-derived polioviruses. Proc Natl Acad Sci USA. 2003;100: 9398-403.
-
(2003)
Proc Natl Acad Sci USA
, vol.100
, pp. 9398-9403
-
-
Cherkasova, E.1
Laassri, M.2
Chizhikov, V.3
-
136
-
-
1342285100
-
Probing alternative foldings of the HIV-1 leader RNA by antisense oligonucleotide scanning arrays
-
Ooms M, Verhoef K, Southern E, Huthoff H, Berkhout B. Probing alternative foldings of the HIV-1 leader RNA by antisense oligonucleotide scanning arrays. Nucleic Acids Res. 2004;32:819-27.
-
(2004)
Nucleic Acids Res
, vol.32
, pp. 819-827
-
-
Ooms, M.1
Verhoef, K.2
Southern, E.3
Huthoff, H.4
Berkhout, B.5
-
137
-
-
3042817386
-
Structural analysis of hepatitis C RNA genome using DNA microarrays
-
Martell M, Briones C, de Vicente A, et al. Structural analysis of hepatitis C RNA genome using DNA microarrays. Nucleic Acids Res. 2004; 32:e90.
-
(2004)
Nucleic Acids Res
, vol.32
-
-
Martell, M.1
Briones, C.2
de Vicente, A.3
-
138
-
-
15844378825
-
Extensive polymorphisms observed in HIV-1 clade B protease gene using high-density oligonucleotide arrays
-
Kozal M, Shah N, Shen N, et al. Extensive polymorphisms observed in HIV-1 clade B protease gene using high-density oligonucleotide arrays. Nat Med. 1996;2:753-9.
-
(1996)
Nat Med
, vol.2
, pp. 753-759
-
-
Kozal, M.1
Shah, N.2
Shen, N.3
-
139
-
-
0035834127
-
Quantitative mutant analysis of viral quasispecies by chip-based matrix- assisted laser desorption/ionization time-of-flight mass spectrometry
-
Amexis G, Oeth P, Abel K, et al. Quantitative mutant analysis of viral quasispecies by chip-based matrix- assisted laser desorption/ionization time-of-flight mass spectrometry. Proc Natl Acad Sci USA. 2001;98: 12097-102.
-
(2001)
Proc Natl Acad Sci USA
, vol.98
, pp. 12097-12102
-
-
Amexis, G.1
Oeth, P.2
Abel, K.3
-
140
-
-
45849100903
-
Genotypic resistance testing in HIV by arrayed primer extension
-
Epub ahead of print
-
Schanné M, Bodem J, Gerhold-Ay A, et al. Genotypic resistance testing in HIV by arrayed primer extension. Anal Bioanal Chem 2008 [Epub ahead of print].
-
(2008)
Anal Bioanal Chem
-
-
Schanné, M.1
Bodem, J.2
Gerhold-Ay, A.3
-
141
-
-
0033578928
-
Universal DNA microarray method for multiplex detection of low abundance point mutations
-
Gerry N, Witowski N, Day J, Hammer R, Barany G, Barany, F. Universal DNA microarray method for multiplex detection of low abundance point mutations. J Mol Biol. 1999;292:251-62.
-
(1999)
J Mol Biol
, vol.292
, pp. 251-262
-
-
Gerry, N.1
Witowski, N.2
Day, J.3
Hammer, R.4
Barany, G.5
Barany, F.6
-
142
-
-
0035895258
-
High-throughput development and characterization of a genomewide collection of gene-based single nucleotide polymorphism markers by chip-based matrix-assisted laser desorption/ionization time-of-flight mass spectrometry
-
Buetow K, Edmonson M, MacDonald R, et al. High-throughput development and characterization of a genomewide collection of gene-based single nucleotide polymorphism markers by chip-based matrix-assisted laser desorption/ionization time-of-flight mass spectrometry. Proc Natl Acad Sci USA. 2001;16:581-4.
-
(2001)
Proc Natl Acad Sci USA
, vol.16
, pp. 581-584
-
-
Buetow, K.1
Edmonson, M.2
MacDonald, R.3
-
143
-
-
0035823170
-
Advances in the analysis of DNA sequence variations using oligonucleotide microchip technology
-
Tillib S, Mirzabekov A. Advances in the analysis of DNA sequence variations using oligonucleotide microchip technology. Curr Opin Biotechnol. 2001;12:53-8.
-
(2001)
Curr Opin Biotechnol
, vol.12
, pp. 53-58
-
-
Tillib, S.1
Mirzabekov, A.2
-
144
-
-
33747220049
-
Nucleic acids and their analogs as nanomaterials for biosensor development
-
Briones C, Martín-Gago JA. Nucleic acids and their analogs as nanomaterials for biosensor development. Current Nanoscience. 2006;2: 257-73.
-
(2006)
Current Nanoscience
, vol.2
, pp. 257-273
-
-
Briones, C.1
Martín-Gago, J.A.2
-
145
-
-
43449126805
-
Label-free detection of DNA hybridization based on hydration-induced tension in nucleic acid films
-
Mertens J, Rogero C, Calleja M, et al. Label-free detection of DNA hybridization based on hydration-induced tension in nucleic acid films. Nature Nanotechnol. 2008;3:301-7.
-
(2008)
Nature Nanotechnol
, vol.3
, pp. 301-307
-
-
Mertens, J.1
Rogero, C.2
Calleja, M.3
|