Evolutionary sequence comparisons using high-density oligonucleotide arrays

Nature Genetics

Volumn 18, Issue 2, 1998, Pages 155-158

  Hacia, Joseph G ^a   Makalowski, Wojciech ^b   Edgemon, Keith ^a   Erdos, Michael R ^a   Robbins, Christiane M ^a   Fodor, Stephen P A ^c   Brody, Lawrence C ^a   Collins, Francis S ^a  

^a NATIONAL HUMAN GENOME RESEARCH INSTITUTE   (United States)

^b NATIONAL INSTITUTES OF HEALTH   (United States)

^c Thermo Fisher Scientific   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

OLIGONUCLEOTIDE;

ARTICLE; DNA STRUCTURE; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; SEQUENCE ANALYSIS; SEQUENCE HOMOLOGY;

ALOUATTA; ANIMALS; BASE SEQUENCE; BRCA1 PROTEIN; DNA PRIMERS; DOGS; EVOLUTION, MOLECULAR; EXONS; GALAGO; GENES, BRCA1; GENETIC TECHNIQUES; GORILLA GORILLA; HOMINIDAE; HUMANS; LEMUR; MACACA MULATTA; MOLECULAR SEQUENCE DATA; POLYMERASE CHAIN REACTION; PONGO PYGMAEUS; PRIMATES;

EID: 0031895247     PISSN: 10614036     EISSN: None     Source Type: Journal    
DOI: 10.1038/ng0298-155     Document Type: Article

References (19)

1. Li, W.-H. Molecular evolution. (Sinauer Associates, Sunderland, Massachusetts, 1997).
2. Tagle, D.A. et al. Embyonic ε and γ globin genes of a prosimian primate (Galago crassicaudatus) nucleotide and amino acid sequences, developmental regulation and phylogenetic footprints. J. Mol. Biol. 203, 439-455 (1988).
3. Chee, M.S. et al. Accessing genetic information with high-density DNA arrays. Science 274, 610-614 (1996).
4. Drmanac, R. et al. DNA sequence determination by hybridization: a strategy for efficient large-scale sequencing. Science 260, 1649-1652 (1993).
5. Fodor, S.P.A. et al. Light-directed spatially addressable parallel chemical synthesis. Science 251, 767-773 (1991).
6. Cronin, M.T. et al. Cystic fibrosis mutation detection by hybridization to light-generated DNA probe arrays. Hum. Mut. 7, 244-255 (1996).
7. Kozal, M.J. et al. Extensive polymorphisms observed in HIV-1 clade B protease gene using high density oligonucleotide arrays. Nature Med. 2, 753-759 (1996).
8. Yershov, G. et al. DNA analysis and diagnostics on oligonucleotide microchips. Proc. Natl. Acad. Sci. USA 93, 4913-4918 (1996).
9. Hacia, J.G. et al. Detection of heterozygous mutations in BRCA1 using high density oligonucleotide arrays and two-colour fluorescence analysis. Nature Genet. 14, 441-447 (1996).
10. Lockhart, D. et al. Monitoring gene expression using high density oligonucleotide arrays. Nature Biotech. 14, 1675-1680 (1996).
11. Shoemaker, D.D. et al. Quantitative phenotypic analysis of yeast deletion mutants using a highly parallel molecular bar-coding strategy. Nature Genet. 14, 450-456 (1996).
12. Milner, N. et al. Selecting effective antisense reagents on combinatorial oligonucleotide arrays. Nature Biotech. 15, 537-541 (1997).
13. Miki, Y. et al. A strong candidate for the breast and ovarian cancer susceptibility gene BRCA1. Science 266, 66-71 (1994).
14. McConkey, E.H. & Goodman, M. A human genome evolution project is needed. Trends in Genet. 13, 350-351 (1997).
15. Kruglyak, L. The use of a genetic map of biallelic markers in linkage studies. Nature Genet. 17, 21-24 (1997).
16. Hoheisel, J.D. Sequence-independent and linear variation of oligonucleotide DNA binding stabilities. Nucleic Acids Res. 24, 430432 (1996).
17. Broude, N.E. Enhanced sequencing by hybridization. Proc. Natl. Acad. Sci. USA 91, 3072-3076 (1994).
18. Szabo, C.I. et al. Human, canine, and murine BRCA1 genes: sequence comparison among species. Hum. Mol. Genet. 5, 1289-1298 (1996).
19. Huang, X. On global sequence alignment. Comput. Appl. Biosci. 10, 227-235 (1994).