-
1
-
-
0037772204
-
Microarrays for bacterial detection and microbial community analysis
-
Zhou J. Microarrays for bacterial detection and microbial community analysis. Curr Opin Microbiol. 6:2003;288-294
-
(2003)
Curr Opin Microbiol
, vol.6
, pp. 288-294
-
-
Zhou, J.1
-
2
-
-
0348224101
-
DNA microarray applications in environmental microbiology
-
Letowski J., Brousseau R., Masson L. DNA microarray applications in environmental microbiology. Anal Lett. 36:2003;3165-3184
-
(2003)
Anal Lett
, vol.36
, pp. 3165-3184
-
-
Letowski, J.1
Brousseau, R.2
Masson, L.3
-
3
-
-
0036624675
-
Potential applications of DNA microarrays in biodefense-related diagnostics
-
Stenger D., Andreadis J., Voraa G., Pancrazio J. Potential applications of DNA microarrays in biodefense-related diagnostics. Curr Opin Biotechnol. 13:2002;208-212
-
(2002)
Curr Opin Biotechnol
, vol.13
, pp. 208-212
-
-
Stenger, D.1
Andreadis, J.2
Voraa, G.3
Pancrazio, J.4
-
4
-
-
0347481283
-
A role for arrays in clinical virology: Fact or fiction?
-
Clewley J.P. A role for arrays in clinical virology: fact or fiction? J Clin Virol. 29:2004;2-12
-
(2004)
J Clin Virol
, vol.29
, pp. 2-12
-
-
Clewley, J.P.1
-
5
-
-
0030984907
-
Oligonucleotide microchips as genosensors for determinative and environmental studies in microbiology
-
Guschin D.Y., Mobarry B.K., Proudnikov D., Stahl D.A., Rittmann B.E., Mirzabekov A.D. Oligonucleotide microchips as genosensors for determinative and environmental studies in microbiology. Appl Environ Microbiol. 63:1997;2397-2402
-
(1997)
Appl Environ Microbiol
, vol.63
, pp. 2397-2402
-
-
Guschin, D.Y.1
Mobarry, B.K.2
Proudnikov, D.3
Stahl, D.A.4
Rittmann, B.E.5
Mirzabekov, A.D.6
-
6
-
-
0242677606
-
Microarrays for genotyping human group a rotavirus by multiplex capture and type-specific primer extension
-
Lovmar L., Fock C., Espinoza F., Bucardo F., Syvanen A.C., Bondeson K. Microarrays for genotyping human group a rotavirus by multiplex capture and type-specific primer extension. J Clin Microbiol. 41:2003;5153-5158
-
(2003)
J Clin Microbiol
, vol.41
, pp. 5153-5158
-
-
Lovmar, L.1
Fock, C.2
Espinoza, F.3
Bucardo, F.4
Syvanen, A.C.5
Bondeson, K.6
-
7
-
-
0042922317
-
Microarray-based identification of thermophilic Campylobacter jejuni, C. coli, C. lari, and C. upsaliensis
-
Volokhov D., Chizhikov V., Chumakov K., Rasooly A. Microarray-based identification of thermophilic Campylobacter jejuni, C. coli, C. lari, and C. upsaliensis. J Clin Microbiol. 41:2003;4071-4080
-
(2003)
J Clin Microbiol
, vol.41
, pp. 4071-4080
-
-
Volokhov, D.1
Chizhikov, V.2
Chumakov, K.3
Rasooly, A.4
-
8
-
-
18744377158
-
Microarray-based detection and genotyping of viral pathogens
-
De Risi and co-workers developed a 70mer microarray for the detection and identification of viruses, also from clinical samples. All known virus genomes were considered during probe design.
-
Wang D., Coscoy L., Zylberberg M., Avila P.C., Boushey H.A., Ganem D., Derisi J.L. Microarray-based detection and genotyping of viral pathogens. Proc Natl Acad Sci USA. 99:2002;15687-15692 De Risi and co-workers developed a 70mer microarray for the detection and identification of viruses, also from clinical samples. All known virus genomes were considered during probe design.
-
(2002)
Proc Natl Acad Sci USA
, vol.99
, pp. 15687-15692
-
-
Wang, D.1
Coscoy, L.2
Zylberberg, M.3
Avila, P.C.4
Boushey, H.A.5
Ganem, D.6
Derisi, J.L.7
-
9
-
-
2142744331
-
Viral and microbial genotyping by a combination of multiplex competitive hybridization and specific extension followed by hybridization to generic tag arrays
-
Improved specificity via the combination of hybridisation and enzyme mediated labelling.
-
Gharizadeh B., Kaller M., Nyren P., Andersson A., Uhlen M., Lundeberg J., Ahmadian A. Viral and microbial genotyping by a combination of multiplex competitive hybridization and specific extension followed by hybridization to generic tag arrays. Nucleic Acids Res. 31:2003;e146 Improved specificity via the combination of hybridisation and enzyme mediated labelling.
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 146
-
-
Gharizadeh, B.1
Kaller, M.2
Nyren, P.3
Andersson, A.4
Uhlen, M.5
Lundeberg, J.6
Ahmadian, A.7
-
10
-
-
0033952657
-
Rapid diagnosis of bacteremia by universal amplification of 23S ribosomal DNA followed by hybridization to an oligonucleotide array
-
Anthony R.M., Brown T.J., French G.L. Rapid diagnosis of bacteremia by universal amplification of 23S ribosomal DNA followed by hybridization to an oligonucleotide array. J Clin Microbiol. 38:2000;781-788
-
(2000)
J Clin Microbiol
, vol.38
, pp. 781-788
-
-
Anthony, R.M.1
Brown, T.J.2
French, G.L.3
-
11
-
-
0036193194
-
Development and evaluation of a 16S ribosomal DNA array-based approach for describing complex microbial communities in ready-to-eat vegetable salads packed in a modified atmosphere
-
Rudi K., Flateland S.L., Hanssen J.F., Bengtsson G., Nissen H. Development and evaluation of a 16S ribosomal DNA array-based approach for describing complex microbial communities in ready-to-eat vegetable salads packed in a modified atmosphere. Appl Environ Microbiol. 68:2002;1146-1156
-
(2002)
Appl Environ Microbiol
, vol.68
, pp. 1146-1156
-
-
Rudi, K.1
Flateland, S.L.2
Hanssen, J.F.3
Bengtsson, G.4
Nissen, H.5
-
12
-
-
10744221283
-
Rapid screening for freshwater bacterial groups by using reverse line blot hybridization
-
Zwart G., van Hannen E.J., Kamst-van Agterveld M.P., Van der G.K., Lindstrom E.S., Van Wichelen J., Lauridsen T., Crump B.C., Han S.K., Declerck S. Rapid screening for freshwater bacterial groups by using reverse line blot hybridization. Appl Environ Microbiol. 69:2003;5875-5883
-
(2003)
Appl Environ Microbiol
, vol.69
, pp. 5875-5883
-
-
Zwart, G.1
Van Hannen, E.J.2
Kamst-Van Agterveld, M.P.3
Van Der, G.K.4
Lindstrom, E.S.5
Van Wichelen, J.6
Lauridsen, T.7
Crump, B.C.8
Han, S.K.9
Declerck, S.10
-
13
-
-
0037335692
-
Optimization strategies for DNA microarray-based detection of bacteria with 16S rRNA-targeting oligonucleotide probes
-
Peplies J., Glockner F.O., Amann R. Optimization strategies for DNA microarray-based detection of bacteria with 16S rRNA-targeting oligonucleotide probes. Appl Environ Microbiol. 69:2003;1397-1407
-
(2003)
Appl Environ Microbiol
, vol.69
, pp. 1397-1407
-
-
Peplies, J.1
Glockner, F.O.2
Amann, R.3
-
14
-
-
0036795787
-
Oligonucleotide microarray for 16S rRNA gene-based detection of all recognized lineages of sulfate-reducing prokaryotes in the environment
-
A comprehensive, thoroughly validated microarray covering the whole known diversity of sulfate reducers.
-
Loy A., Lehner A., Lee N., Adamczyk J., Meier H., Ernst J., Schleifer K.H., Wagner M. Oligonucleotide microarray for 16S rRNA gene-based detection of all recognized lineages of sulfate-reducing prokaryotes in the environment. Appl Environ Microbiol. 68:2002;5064-5081 A comprehensive, thoroughly validated microarray covering the whole known diversity of sulfate reducers.
-
(2002)
Appl Environ Microbiol
, vol.68
, pp. 5064-5081
-
-
Loy, A.1
Lehner, A.2
Lee, N.3
Adamczyk, J.4
Meier, H.5
Ernst, J.6
Schleifer, K.H.7
Wagner, M.8
-
15
-
-
2942541531
-
Diagnostic oligonucleotide microarrays for microbiology
-
Edited by Blalock E. New York: Kluwer Academic Publishers;
-
Bodrossy L: Diagnostic oligonucleotide microarrays for microbiology. In A Beginner's Guide to Microarrays, edn 1. Edited by Blalock E. New York: Kluwer Academic Publishers; 2003:43-92.
-
(2003)
A Beginner's Guide to Microarrays, Edn 1
, pp. 43-92
-
-
Bodrossy, L.1
-
16
-
-
0042522548
-
Detection and identification of Escherichia coli, Shigella, and Salmonella by microarrays using the gyrB gene
-
Kakinuma K., Fukushima M., Kawaguchi R. Detection and identification of Escherichia coli, Shigella, and Salmonella by microarrays using the gyrB gene. Biotechnol Bioeng. 83:2003;721-728
-
(2003)
Biotechnol Bioeng
, vol.83
, pp. 721-728
-
-
Kakinuma, K.1
Fukushima, M.2
Kawaguchi, R.3
-
17
-
-
0038302040
-
Development and validation of a diagnostic microbial microarray for methanotrophs
-
A comprehensive, thoroughly validated microarray covering the entire known diversity of methanotrophs. Good example for the application of a 'functional' marker (pmoA).
-
Bodrossy L., Stralis-Pavese N., Murrell J.C., Radajewski S., Weilharter A., Sessitsch A. Development and validation of a diagnostic microbial microarray for methanotrophs. Environ Microbiol. 5:2003;566-582 A comprehensive, thoroughly validated microarray covering the entire known diversity of methanotrophs. Good example for the application of a 'functional' marker (pmoA).
-
(2003)
Environ Microbiol
, vol.5
, pp. 566-582
-
-
Bodrossy, L.1
Stralis-Pavese, N.2
Murrell, J.C.3
Radajewski, S.4
Weilharter, A.5
Sessitsch, A.6
-
18
-
-
0034485953
-
A nested array of rRNA targeted probes for the detection and identification of enterococci by reverse hybridization
-
Behr T., Koob C., Schedl M., Mehlen A., Meier H., Knopp D., Frahm E., Obst U., Schleifer K., Niessner R., Ludwig W. A nested array of rRNA targeted probes for the detection and identification of enterococci by reverse hybridization. Syst Appl Microbiol. 23:2000;563-572
-
(2000)
Syst Appl Microbiol
, vol.23
, pp. 563-572
-
-
Behr, T.1
Koob, C.2
Schedl, M.3
Mehlen, A.4
Meier, H.5
Knopp, D.6
Frahm, E.7
Obst, U.8
Schleifer, K.9
Niessner, R.10
Ludwig, W.11
-
19
-
-
1542645213
-
Protocols for 16S rDNA array analyses of microbial communities by sequence-specific labeling of DNA probes
-
Rudi K., Treimo J., Nissen H., Vegarud G. Protocols for 16S rDNA array analyses of microbial communities by sequence-specific labeling of DNA probes. ScientificWorldJournal. 3:2003;578-584
-
(2003)
ScientificWorldJournal
, vol.3
, pp. 578-584
-
-
Rudi, K.1
Treimo, J.2
Nissen, H.3
Vegarud, G.4
-
20
-
-
3343018968
-
Bacterial discrimination by means of a universal array approach mediated by LDR (ligase detection reaction)
-
Busti E., Bordoni R., Castiglioni B., Monciardini P., Sosio M., Donadio S., Consolandi C., Rossi B.L., Battaglia C., De Bellis G. Bacterial discrimination by means of a universal array approach mediated by LDR (ligase detection reaction). BMC Microbiol. 2:2002;27
-
(2002)
BMC Microbiol
, vol.2
, pp. 27
-
-
Busti, E.1
Bordoni, R.2
Castiglioni, B.3
Monciardini, P.4
Sosio, M.5
Donadio, S.6
Consolandi, C.7
Rossi, B.L.8
Battaglia, C.9
De Bellis, G.10
-
21
-
-
0034961981
-
Identification of rifampicin-resistant Mycobacterium tuberculosis strains by hybridization, PCR, and ligase detection reaction on oligonucleotide microchips
-
Mikhailovich V., Lapa S., Gryadunov D., Sobolev A., Strizhkov B., Chernyh N., Skotnikova O., Irtuganova O., Moroz A., Litvinov V., et al. Identification of rifampicin-resistant Mycobacterium tuberculosis strains by hybridization, PCR, and ligase detection reaction on oligonucleotide microchips. J Clin Microbiol. 39:2001;2531-2540
-
(2001)
J Clin Microbiol
, vol.39
, pp. 2531-2540
-
-
Mikhailovich, V.1
Lapa, S.2
Gryadunov, D.3
Sobolev, A.4
Strizhkov, B.5
Chernyh, N.6
Skotnikova, O.7
Irtuganova, O.8
Moroz, A.9
Litvinov, V.10
-
22
-
-
0141564886
-
Validation of a more sensitive method for using spotted oligonucleotide DNA microarrays for functional genomics studies on bacterial communities
-
Optimised parameters for the application of 70mer oligoprobes.
-
Denef V.J., Park J., Rodrigues J.L., Tsoi T.V., Hashsham S.A., Tiedje J.M. Validation of a more sensitive method for using spotted oligonucleotide DNA microarrays for functional genomics studies on bacterial communities. Environ Microbiol. 5:2003;933-943 Optimised parameters for the application of 70mer oligoprobes.
-
(2003)
Environ Microbiol
, vol.5
, pp. 933-943
-
-
Denef, V.J.1
Park, J.2
Rodrigues, J.L.3
Tsoi, T.V.4
Hashsham, S.A.5
Tiedje, J.M.6
-
23
-
-
1842579620
-
Evaluation of 50-mer oligonucleotide arrays for detecting microbial populations in environmental samples
-
Optimised parameters for the application of 50mer oligoprobes.
-
Tiquia S.M., Wu L., Passovets S., Xu D., Xu Y., Zhou J. Evaluation of 50-mer oligonucleotide arrays for detecting microbial populations in environmental samples. Biotechniques. 36:2004;664-675 Optimised parameters for the application of 50mer oligoprobes.
-
(2004)
Biotechniques
, vol.36
, pp. 664-675
-
-
Tiquia, S.M.1
Wu, L.2
Passovets, S.3
Xu, D.4
Xu, Y.5
Zhou, J.6
-
24
-
-
10744233007
-
Radioisotopic, culture-based, and oligonucleotide microchip analyses of thermophilic microbial communities in a continental high-temperature petroleum reservoir
-
This paper demonstrates the application potential of the gel-pad platform for environmental microbiology.
-
Bonch-Osmolovskaya E.A., Miroshnichenko M.L., Lebedinsky A.V., Chernyh N.A., Nazina T.N., Ivoilov V.S., Belyaev S.S., Boulygina E.S., Lysov Y.P., Perov A.N., et al. Radioisotopic, culture-based, and oligonucleotide microchip analyses of thermophilic microbial communities in a continental high-temperature petroleum reservoir. Appl Environ Microbiol. 69:2003;6143-6151 This paper demonstrates the application potential of the gel-pad platform for environmental microbiology.
-
(2003)
Appl Environ Microbiol
, vol.69
, pp. 6143-6151
-
-
Bonch-Osmolovskaya, E.A.1
Miroshnichenko, M.L.2
Lebedinsky, A.V.3
Chernyh, N.A.4
Nazina, T.N.5
Ivoilov, V.S.6
Belyaev, S.S.7
Boulygina, E.S.8
Lysov, Y.P.9
Perov, A.N.10
-
25
-
-
0036245011
-
High-density microarray of small-subunit ribosomal DNA probes
-
Wilson K.H., Wilson W.J., Radosevich J.L., DeSantis T.Z., Viswanathan V.S., Kuczmarski T.A., Andersen G.L. High-density microarray of small-subunit ribosomal DNA probes. Appl Environ Microbiol. 68:2002;2535-2541
-
(2002)
Appl Environ Microbiol
, vol.68
, pp. 2535-2541
-
-
Wilson, K.H.1
Wilson, W.J.2
Radosevich, J.L.3
Desantis, T.Z.4
Viswanathan, V.S.5
Kuczmarski, T.A.6
Andersen, G.L.7
-
26
-
-
0036304417
-
Parallel characterization of anaerobic toluene- and ethylbenzene- degrading microbial consortia by PCR-denaturing gradient gel electrophoresis, RNA-DNA membrane hybridization and DNA microarray technology
-
This paper demonstrates the application potential of the gel-pad platform for environmental microbiology.
-
Koizumi Y., Kelly J.J., Nakagawa T., Urakawa H., El Fantroussi S., Al Muzaini S., Fukui M., Urushigawa Y., Stahl D.A. Parallel characterization of anaerobic toluene- and ethylbenzene-degrading microbial consortia by PCR-denaturing gradient gel electrophoresis, RNA-DNA membrane hybridization and DNA microarray technology. Appl Environ Microbiol. 68:2002;3215-3225 This paper demonstrates the application potential of the gel-pad platform for environmental microbiology.
-
(2002)
Appl Environ Microbiol
, vol.68
, pp. 3215-3225
-
-
Koizumi, Y.1
Kelly, J.J.2
Nakagawa, T.3
Urakawa, H.4
El Fantroussi, S.5
Al Muzaini, S.6
Fukui, M.7
Urushigawa, Y.8
Stahl, D.A.9
-
27
-
-
0037031130
-
Design and evaluation of oligonucleotide-microarray method for the detection of human intestinal bacteria in fecal samples
-
Wang R.F., Beggs M.L., Robertson L.H., Cerniglia C.E. Design and evaluation of oligonucleotide-microarray method for the detection of human intestinal bacteria in fecal samples. FEMS Microbiol Lett. 213:2002;175-182
-
(2002)
FEMS Microbiol Lett
, vol.213
, pp. 175-182
-
-
Wang, R.F.1
Beggs, M.L.2
Robertson, L.H.3
Cerniglia, C.E.4
-
28
-
-
17944390698
-
Utilization of tmRNA sequences for bacterial identification
-
Schonhuber W., Le Bourhis G.L., Tremblay J., Amann R., Kulakauskas S. Utilization of tmRNA sequences for bacterial identification. BMC Microbiol. 1:2001;20
-
(2001)
BMC Microbiol
, vol.1
, pp. 20
-
-
Schonhuber, W.1
Le Bourhis, G.L.2
Tremblay, J.3
Amann, R.4
Kulakauskas, S.5
-
29
-
-
0037391375
-
Direct profiling of environmental microbial populations by thermal dissociation analysis of native rRNAs hybridized to oligonucleotide microarrays
-
Detection and identification via hybridisation of rRNA extracted directly from environmental samples.
-
El Fantroussi S., Urakawa H., Bernhard A.E., Kelly J.J., Noble P.A., Smidt H., Yershov G.M., Stahl D.A. Direct profiling of environmental microbial populations by thermal dissociation analysis of native rRNAs hybridized to oligonucleotide microarrays. Appl Environ Microbiol. 69:2003;2377-2382 Detection and identification via hybridisation of rRNA extracted directly from environmental samples.
-
(2003)
Appl Environ Microbiol
, vol.69
, pp. 2377-2382
-
-
El Fantroussi, S.1
Urakawa, H.2
Bernhard, A.E.3
Kelly, J.J.4
Noble, P.A.5
Smidt, H.6
Yershov, G.M.7
Stahl, D.A.8
-
30
-
-
0038558598
-
Sequence versus structure for the direct detection of 16S rRNA on planar oligonucleotide microarrays
-
Detection and identification via hybridisation of rRNA extracted directly from environmental samples, using a combination of capture and labelled chaperone (detector) probes.
-
Chandler D.P., Newton G.J., Small J.A., Daly D.S. Sequence versus structure for the direct detection of 16S rRNA on planar oligonucleotide microarrays. Appl Environ Microbiol. 69:2003;2950-2958 Detection and identification via hybridisation of rRNA extracted directly from environmental samples, using a combination of capture and labelled chaperone (detector) probes.
-
(2003)
Appl Environ Microbiol
, vol.69
, pp. 2950-2958
-
-
Chandler, D.P.1
Newton, G.J.2
Small, J.A.3
Daly, D.S.4
-
31
-
-
18744413892
-
Label-free detection of 16S ribosomal RNA hybridization on reusable DNA arrays using surface plasmon resonance imaging
-
Nelson B.P., Liles M.R., Frederick K.B., Corn R.M., Goodman R.M. Label-free detection of 16S ribosomal RNA hybridization on reusable DNA arrays using surface plasmon resonance imaging. Environ Microbiol. 4:2002;735-743
-
(2002)
Environ Microbiol
, vol.4
, pp. 735-743
-
-
Nelson, B.P.1
Liles, M.R.2
Frederick, K.B.3
Corn, R.M.4
Goodman, R.M.5
-
32
-
-
0242573148
-
The isotope array, a new tool that employs substrate-mediated labeling of rRNA for determination of microbial community structure and function
-
The isotope array approach enables the researcher to link phylogenetic information to function via radioactive labelling and detection in a microarray format.
-
Adamczyk J., Hesselsoe M., Iversen N., Horn M., Lehner A., Nielsen P.H., Schloter M., Roslev P., Wagner M. The isotope array, a new tool that employs substrate-mediated labeling of rRNA for determination of microbial community structure and function. Appl Environ Microbiol. 69:2003;6875-6887 The isotope array approach enables the researcher to link phylogenetic information to function via radioactive labelling and detection in a microarray format.
-
(2003)
Appl Environ Microbiol
, vol.69
, pp. 6875-6887
-
-
Adamczyk, J.1
Hesselsoe, M.2
Iversen, N.3
Horn, M.4
Lehner, A.5
Nielsen, P.H.6
Schloter, M.7
Roslev, P.8
Wagner, M.9
-
33
-
-
0038268050
-
A novel multiplex quantitative DNA array based PCR (MQDA-PCR) for quantification of transgenic maize in food and feed
-
Rudi K., Rud I., Holck A. A novel multiplex quantitative DNA array based PCR (MQDA-PCR) for quantification of transgenic maize in food and feed. Nucleic Acids Res. 31:2003;e62
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 62
-
-
Rudi, K.1
Rud, I.2
Holck, A.3
-
35
-
-
0025944267
-
DNA probes: Applications of the principles of nucleic acid hybridization
-
Wetmur J.G. DNA probes: applications of the principles of nucleic acid hybridization. Crit Rev Biochem Mol Biol. 26:1991;227-259
-
(1991)
Crit Rev Biochem Mol Biol
, vol.26
, pp. 227-259
-
-
Wetmur, J.G.1
-
36
-
-
0035072249
-
Expression profiling using microarrays fabricated by an ink-jet oligonucleotide synthesizer
-
Hughes T.R., Mao M., Jones A.R., Burchard J., Marton M.J., Shannon K.W., Lefkowitz S.M., Ziman M., Schelter J.M., Meyer M.R., et al. Expression profiling using microarrays fabricated by an ink-jet oligonucleotide synthesizer. Nat Biotechnol. 19:2001;342-347
-
(2001)
Nat Biotechnol
, vol.19
, pp. 342-347
-
-
Hughes, T.R.1
Mao, M.2
Jones, A.R.3
Burchard, J.4
Marton, M.J.5
Shannon, K.W.6
Lefkowitz, S.M.7
Ziman, M.8
Schelter, J.M.9
Meyer, M.R.10
-
37
-
-
0037316061
-
Oligonucleotide microarray for the study of functional gene diversity in the nitrogen cycle in the environment
-
Taroncher-Oldenburg G., Griner E.M., Francis C.A., Ward B.B. Oligonucleotide microarray for the study of functional gene diversity in the nitrogen cycle in the environment. Appl Environ Microbiol. 69:2003;1159-1171
-
(2003)
Appl Environ Microbiol
, vol.69
, pp. 1159-1171
-
-
Taroncher-Oldenburg, G.1
Griner, E.M.2
Francis, C.A.3
Ward, B.B.4
-
38
-
-
0034669668
-
Assessment of the sensitivity and specificity of oligonucleotide (50mer) microarrays
-
Kane M.D., Jatkoe T.A., Stumpf C.R., Lu J., Thomas J.D., Madore S.J. Assessment of the sensitivity and specificity of oligonucleotide (50mer) microarrays. Nucleic Acids Res. 28:2000;4552-4557
-
(2000)
Nucleic Acids Res
, vol.28
, pp. 4552-4557
-
-
Kane, M.D.1
Jatkoe, T.A.2
Stumpf, C.R.3
Lu, J.4
Thomas, J.D.5
Madore, S.J.6
-
39
-
-
18344396798
-
Comprehensive human genome amplification using multiple displacement amplification
-
Dean F.B., Hosono S., Fang L., Wu X., Faruqi A.F., Bray-Ward P., Sun Z., Zong Q., Du Y., Du J., et al. Comprehensive human genome amplification using multiple displacement amplification. Proc Natl Acad Sci U S A. 99:2002;5261-5266
-
(2002)
Proc Natl Acad Sci U S a
, vol.99
, pp. 5261-5266
-
-
Dean, F.B.1
Hosono, S.2
Fang, L.3
Wu, X.4
Faruqi, A.F.5
Bray-Ward, P.6
Sun, Z.7
Zong, Q.8
Du, Y.9
Du, J.10
-
40
-
-
0034830935
-
Rapid amplification of plasmid and phage DNA using Phi 29 DNA polymerase and multiply-primed rolling circle amplification
-
Dean F.B., Nelson J.R., Giesler T.L., Lasken R.S. Rapid amplification of plasmid and phage DNA using Phi 29 DNA polymerase and multiply-primed rolling circle amplification. Genome Res. 11:2001;1095-1099
-
(2001)
Genome Res
, vol.11
, pp. 1095-1099
-
-
Dean, F.B.1
Nelson, J.R.2
Giesler, T.L.3
Lasken, R.S.4
-
41
-
-
0029966845
-
Whole genome amplification using a degenerate oligonucleotide primer allows hundreds of genotypes to be performed on less than one nanogram of genomic DNA
-
Cheung V.G., Nelson S.F. Whole genome amplification using a degenerate oligonucleotide primer allows hundreds of genotypes to be performed on less than one nanogram of genomic DNA. Proc Natl Acad Sci U S A. 93:1996;14676-14679
-
(1996)
Proc Natl Acad Sci U S a
, vol.93
, pp. 14676-14679
-
-
Cheung, V.G.1
Nelson, S.F.2
-
42
-
-
0036135264
-
Single-base-pair discrimination of terminal mismatches by using oligonucleotide microarrays and neural network analyses
-
Urakawa H., Noble P.A., El Fantroussi S., Kelly J.J., Stahl D.A. Single-base-pair discrimination of terminal mismatches by using oligonucleotide microarrays and neural network analyses. Appl Environ Microbiol. 68:2002;235-244
-
(2002)
Appl Environ Microbiol
, vol.68
, pp. 235-244
-
-
Urakawa, H.1
Noble, P.A.2
El Fantroussi, S.3
Kelly, J.J.4
Stahl, D.A.5
-
43
-
-
0038220917
-
Optimization of single-base-pair mismatch discrimination in oligonucleotide microarrays
-
A very thorough study on the effect of mismatch type and position on hybridisation. A neural network program was also developed for the prediction of optimal hybridisation temperatures for the probes.
-
Urakawa H., El Fantroussi S., Smidt H., Smoot J.C., Tribou E.H., Kelly J.J., Noble P.A., Stahl D.A. Optimization of single-base-pair mismatch discrimination in oligonucleotide microarrays. Appl Environ Microbiol. 69:2003;2848-2856 A very thorough study on the effect of mismatch type and position on hybridisation. A neural network program was also developed for the prediction of optimal hybridisation temperatures for the probes.
-
(2003)
Appl Environ Microbiol
, vol.69
, pp. 2848-2856
-
-
Urakawa, H.1
El Fantroussi, S.2
Smidt, H.3
Smoot, J.C.4
Tribou, E.H.5
Kelly, J.J.6
Noble, P.A.7
Stahl, D.A.8
-
44
-
-
1842509942
-
Optimisation of diagnostic microarray for application in analysing landfill methanotroph communities under different plant covers
-
A real application of a microbial diagnostic microarray. Landfill site simulating experiments with different plant covers were analysed with respect to their methanotroph communities using a pmoA based functional microarray.
-
Stralis-Pavese N., Sessitsch A., Weilharter A., Reichenauer T., Riesing J., Csontos J., Murrell J.C., Bodrossy L. Optimisation of diagnostic microarray for application in analysing landfill methanotroph communities under different plant covers. Environ Microbiol. 6:2004;347-363 A real application of a microbial diagnostic microarray. Landfill site simulating experiments with different plant covers were analysed with respect to their methanotroph communities using a pmoA based functional microarray.
-
(2004)
Environ Microbiol
, vol.6
, pp. 347-363
-
-
Stralis-Pavese, N.1
Sessitsch, A.2
Weilharter, A.3
Reichenauer, T.4
Riesing, J.5
Csontos, J.6
Murrell, J.C.7
Bodrossy, L.8
-
45
-
-
0036193078
-
Quantitative detection of microbial genes by using DNA microarrays
-
Cho J.C., Tiedje J.M. Quantitative detection of microbial genes by using DNA microarrays. Appl Environ Microbiol. 68:2002;1425-1430
-
(2002)
Appl Environ Microbiol
, vol.68
, pp. 1425-1430
-
-
Cho, J.C.1
Tiedje, J.M.2
-
46
-
-
0033823572
-
Application of sequence-specific labeled 16S rRNA gene oligonucleotide probes for genetic profiling of cyanobacterial abundance and diversity by array hybridization
-
Rudi K., Skulberg O.M., Skulberg R., Jakobsen K.S. Application of sequence-specific labeled 16S rRNA gene oligonucleotide probes for genetic profiling of cyanobacterial abundance and diversity by array hybridization. Appl Environ Microbiol. 66:2000;4004-4011
-
(2000)
Appl Environ Microbiol
, vol.66
, pp. 4004-4011
-
-
Rudi, K.1
Skulberg, O.M.2
Skulberg, R.3
Jakobsen, K.S.4
-
47
-
-
0036197761
-
Species-level identification of orthopoxviruses with an oligonucleotide microchip
-
Lapa S., Mikheev M., Shchelkunov S., Mikhailovich V., Sobolev A., Blinov V., Babkin I., Guskov A., Sokunova E., Zasedatelev A., et al. Species-level identification of orthopoxviruses with an oligonucleotide microchip. J Clin Microbiol. 40:2002;753-757
-
(2002)
J Clin Microbiol
, vol.40
, pp. 753-757
-
-
Lapa, S.1
Mikheev, M.2
Shchelkunov, S.3
Mikhailovich, V.4
Sobolev, A.5
Blinov, V.6
Babkin, I.7
Guskov, A.8
Sokunova, E.9
Zasedatelev, A.10
-
48
-
-
0036308528
-
Detection and genotyping of human group a rotaviruses by oligonucleotide microarray hybridization
-
Chizhikov V., Wagner M., Ivshina A., Hoshino Y., Kapikian A.Z., Chumakov K. Detection and genotyping of human group a rotaviruses by oligonucleotide microarray hybridization. J Clin Microbiol. 40:2002;2398-2407
-
(2002)
J Clin Microbiol
, vol.40
, pp. 2398-2407
-
-
Chizhikov, V.1
Wagner, M.2
Ivshina, A.3
Hoshino, Y.4
Kapikian, A.Z.5
Chumakov, K.6
-
50
-
-
0038180478
-
Detection and identification of Mycobacterium species isolates by DNA microarray
-
A good example for the application of a higher resolution universal marker (gyrB).
-
Fukushima M., Kakinuma K., Hayashi H., Nagai H., Ito K., Kawaguchi R. Detection and identification of Mycobacterium species isolates by DNA microarray. J Clin Microbiol. 41:2003;2605-2615 A good example for the application of a higher resolution universal marker (gyrB).
-
(2003)
J Clin Microbiol
, vol.41
, pp. 2605-2615
-
-
Fukushima, M.1
Kakinuma, K.2
Hayashi, H.3
Nagai, H.4
Ito, K.5
Kawaguchi, R.6
-
51
-
-
0036208498
-
Genotyping Cryptosporidium parvum with an hsp70 single-nucleotide polymorphism microarray
-
Straub T.M., Daly D.S., Wunshel S., Rochelle P.A., DeLeon R., Chandler D.P. Genotyping Cryptosporidium parvum with an hsp70 single-nucleotide polymorphism microarray. Appl Environ Microbiol. 68:2002;1817-1826
-
(2002)
Appl Environ Microbiol
, vol.68
, pp. 1817-1826
-
-
Straub, T.M.1
Daly, D.S.2
Wunshel, S.3
Rochelle, P.A.4
Deleon, R.5
Chandler, D.P.6
-
52
-
-
0036018472
-
Sequence-specific identification of 18 pathogenic microorganisms using microarray technology
-
Very sensitive detection of potential biowarfare agents using Affymetrix chip technology and over 65,000 probes.
-
Wilson W.J., Strout C.L., DeSantis T.Z., Stilwell J.L., Carrano A.V., Andersen G.L. Sequence-specific identification of 18 pathogenic microorganisms using microarray technology. Mol Cell Probes. 16:2002;119-127 Very sensitive detection of potential biowarfare agents using Affymetrix chip technology and over 65, 000 probes.
-
(2002)
Mol Cell Probes
, vol.16
, pp. 119-127
-
-
Wilson, W.J.1
Strout, C.L.2
Desantis, T.Z.3
Stilwell, J.L.4
Carrano, A.V.5
Andersen, G.L.6
-
53
-
-
0035811090
-
Fluorescent detection of cyanobacterial DNA using bacterial magnetic particles on a MAG-microarray
-
Matsunaga T., Nakayama H., Okochi M., Takeyama H. Fluorescent detection of cyanobacterial DNA using bacterial magnetic particles on a MAG-microarray. Biotechnol Bioeng. 73:2001;400-405
-
(2001)
Biotechnol Bioeng
, vol.73
, pp. 400-405
-
-
Matsunaga, T.1
Nakayama, H.2
Okochi, M.3
Takeyama, H.4
-
54
-
-
0037102406
-
DNA probes on beads arrayed in a capillary, 'Bead-array', exhibited high hybridization performance
-
Kohara Y., Noda H., Okano K., Kambara H. DNA probes on beads arrayed in a capillary, 'Bead-array', exhibited high hybridization performance. Nucleic Acids Res. 30:2002;e87
-
(2002)
Nucleic Acids Res
, vol.30
, pp. 87
-
-
Kohara, Y.1
Noda, H.2
Okano, K.3
Kambara, H.4
-
55
-
-
0036151764
-
Quantitation of DNA sequences in environmental PCR products by a multiplexed, bead-based method
-
Spiro A., Lowe M. Quantitation of DNA sequences in environmental PCR products by a multiplexed, bead-based method. Appl Environ Microbiol. 68:2002;1010-1013
-
(2002)
Appl Environ Microbiol
, vol.68
, pp. 1010-1013
-
-
Spiro, A.1
Lowe, M.2
-
56
-
-
0035090330
-
Antimicrobial resistance and bacterial identification utilizing a microelectronic chip array
-
Westin L., Miller C., Vollmer D., Canter D., Radtkey R., Nerenberg M., O'Connell J.P. Antimicrobial resistance and bacterial identification utilizing a microelectronic chip array. J Clin Microbiol. 39:2001;1097-1104
-
(2001)
J Clin Microbiol
, vol.39
, pp. 1097-1104
-
-
Westin, L.1
Miller, C.2
Vollmer, D.3
Canter, D.4
Radtkey, R.5
Nerenberg, M.6
O'Connell, J.P.7
-
57
-
-
0141755386
-
Consecutive analysis of bacterial PCR samples on a single electronic microarray
-
Zimmermann K., Eiter T., Scheiflinger F. Consecutive analysis of bacterial PCR samples on a single electronic microarray. J Microbiol Methods. 55:2003;471-474
-
(2003)
J Microbiol Methods
, vol.55
, pp. 471-474
-
-
Zimmermann, K.1
Eiter, T.2
Scheiflinger, F.3
-
58
-
-
0344062863
-
Detection of bacteriophage infection and prophage induction in bacterial cultures by means of electric DNA chips
-
Gabig-Ciminska M., Los M., Holmgren A., Albers J., Czyz A., Hintsche R., Wegrzyn G., Enfors S.O. Detection of bacteriophage infection and prophage induction in bacterial cultures by means of electric DNA chips. Anal Biochem. 324:2004;84-91
-
(2004)
Anal Biochem
, vol.324
, pp. 84-91
-
-
Gabig-Ciminska, M.1
Los, M.2
Holmgren, A.3
Albers, J.4
Czyz, A.5
Hintsche, R.6
Wegrzyn, G.7
Enfors, S.O.8
-
59
-
-
18444363918
-
Multiple label-free biodetection and quantitative DNA-binding assays on a nanomechanical cantilever array
-
McKendry R., Zhang J., Arntz Y., Strunz T., Hegner M., Lang H.P., Baller M.K., Certa U., Meyer E., Guntherodt H.J., Gerber C. Multiple label-free biodetection and quantitative DNA-binding assays on a nanomechanical cantilever array. Proc Natl Acad Sci U S A. 99:2002;9783-9788
-
(2002)
Proc Natl Acad Sci U S a
, vol.99
, pp. 9783-9788
-
-
McKendry, R.1
Zhang, J.2
Arntz, Y.3
Strunz, T.4
Hegner, M.5
Lang, H.P.6
Baller, M.K.7
Certa, U.8
Meyer, E.9
Guntherodt, H.J.10
Gerber, C.11
-
60
-
-
0028983492
-
Real-time detection of DNA hybridization and melting on oligonucleotide arrays by using optical wave guides
-
Stimpson D.I., Hoijer J.V., Hsieh W.T., Jou C., Gordon J., Theriault T., Gamble R., Baldeschwieler J.D. Real-time detection of DNA hybridization and melting on oligonucleotide arrays by using optical wave guides. Proc Natl Acad Sci U S A. 92:1995;6379-6383
-
(1995)
Proc Natl Acad Sci U S a
, vol.92
, pp. 6379-6383
-
-
Stimpson, D.I.1
Hoijer, J.V.2
Hsieh, W.T.3
Jou, C.4
Gordon, J.5
Theriault, T.6
Gamble, R.7
Baldeschwieler, J.D.8
-
61
-
-
0037310844
-
LNA: A versatile tool for therapeutics and genomics
-
Petersen M., Wengel J. LNA: a versatile tool for therapeutics and genomics. Trends Biotechnol. 21:2003;74-81
-
(2003)
Trends Biotechnol
, vol.21
, pp. 74-81
-
-
Petersen, M.1
Wengel, J.2
-
62
-
-
0037397972
-
A(r)Ray of hope in analysis of the function and diversity of microbial communities
-
Polz M.F., Bertilsson S., Acinas S.G., Hunt D. A(r)Ray of hope in analysis of the function and diversity of microbial communities. Biol Bull. 204:2003;196-199
-
(2003)
Biol Bull
, vol.204
, pp. 196-199
-
-
Polz, M.F.1
Bertilsson, S.2
Acinas, S.G.3
Hunt, D.4
-
64
-
-
1542723586
-
Microarray-based identification of bacteria in clinical samples by solid-phase PCR amplification of 23S ribosomal DNA sequences
-
Mitterer G., Huber M., Leidinger E., Kirisits C., Lubitz W., Mueller M.W., Schmidt W.M. Microarray-based identification of bacteria in clinical samples by solid-phase PCR amplification of 23S ribosomal DNA sequences. J Clin Microbiol. 42:2004;1048-1057
-
(2004)
J Clin Microbiol
, vol.42
, pp. 1048-1057
-
-
Mitterer, G.1
Huber, M.2
Leidinger, E.3
Kirisits, C.4
Lubitz, W.5
Mueller, M.W.6
Schmidt, W.M.7
-
65
-
-
0141923868
-
Molecular detection and identification of influenza viruses by oligonucleotide microarray hybridization
-
Sengupta S., Onodera K., Lai A., Melcher U. Molecular detection and identification of influenza viruses by oligonucleotide microarray hybridization. J Clin Microbiol. 41:2003;4542-4550
-
(2003)
J Clin Microbiol
, vol.41
, pp. 4542-4550
-
-
Sengupta, S.1
Onodera, K.2
Lai, A.3
Melcher, U.4
-
66
-
-
2642525491
-
Application and validation of DNA microarrays for the 16S rRNA-based analysis of marine bacterioplankton
-
in press.
-
Peplies J, Lau SCK, Pernthaler J, Amann R, Glockner FO: Application and validation of DNA microarrays for the 16S rRNA-based analysis of marine bacterioplankton. Environ Microbiol 2004, in press.
-
(2004)
Environ Microbiol
-
-
Peplies, J.1
Lau, S.C.K.2
Pernthaler, J.3
Amann, R.4
Glockner, F.O.5
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