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Volumn 7, Issue , 2006, Pages

Microarray-based identification of antigenic variants of foot-and-mouth disease virus: A bioinformatics quality assessment

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Indexed keywords

VIRUS DNA;

EID: 33745493613     PISSN: 14712164     EISSN: 14712164     Source Type: Journal    
DOI: 10.1186/1471-2164-7-117     Document Type: Article
Times cited : (21)

References (51)
  • 2
    • 0017038871 scopus 로고
    • The proportion of revertant and mutant phage in a growing population, as a function of mutation and growth rate
    • Batschelet E, Domingo E, Weissmann C: The proportion of revertant and mutant phage in a growing population, as a function of mutation and growth rate. Gene 1976, 1(1):27-32.
    • (1976) Gene , vol.1 , Issue.1 , pp. 27-32
    • Batschelet, E.1    Domingo, E.2    Weissmann, C.3
  • 5
    • 15544373334 scopus 로고
    • Sequence space and quasispecies distribution
    • Edited by. Domingo E, Ahlquist P, Holland JJ. Boca Raton, FL, CRC Press
    • Eigen M, Biebricher CK: Sequence space and quasispecies distribution. In RNA Genetics Volume 3. Edited by. Domingo E, Ahlquist P, Holland JJ. Boca Raton, FL, CRC Press; 1988:211-245.
    • (1988) RNA Genetics , vol.3 , pp. 211-245
    • Eigen, M.1    Biebricher, C.K.2
  • 6
    • 33745490138 scopus 로고    scopus 로고
    • Increased fidelity reduces poliovirus fitness under selective pressure in mice
    • Pfeiffer JK, Kirkegaard K: Increased fidelity reduces poliovirus fitness under selective pressure in mice. PLoS Pathogens 2005, 1:102-110.
    • (2005) PLoS Pathogens , vol.1 , pp. 102-110
    • Pfeiffer, J.K.1    Kirkegaard, K.2
  • 7
    • 31144465690 scopus 로고    scopus 로고
    • Quasispecies diversity determines pathogenesis through cooperative interactions in a viral population
    • Vignuzzi M, Stone JK, Arnold JJ, Cameron CE, Andino R: Quasispecies diversity determines pathogenesis through cooperative interactions in a viral population. Nature 2006, 439:344-348.
    • (2006) Nature , vol.439 , pp. 344-348
    • Vignuzzi, M.1    Stone, J.K.2    Arnold, J.J.3    Cameron, C.E.4    Andino, R.5
  • 9
    • 30644457351 scopus 로고    scopus 로고
    • Hepatitis C virus population dynamics during infection
    • Pawlotsky JM: Hepatitis C virus population dynamics during infection. Current Topics in Microbiol and Immunol 2006, 299:261-284.
    • (2006) Current Topics in Microbiol and Immunol , vol.299 , pp. 261-284
    • Pawlotsky, J.M.1
  • 12
    • 8744222695 scopus 로고    scopus 로고
    • Structure of foot-and-mouth disease virus RNA-dependent RNA polymerase and its complex with a template-primer RNA
    • Ferrer-Orta C, Arias A, Perez-Luque R, Escarmis C, Domingo E, Verdaguer N: Structure of foot-and-mouth disease virus RNA-dependent RNA polymerase and its complex with a template-primer RNA. J Biol Chem 2004, 279(45):47212-47221.
    • (2004) J Biol Chem , vol.279 , Issue.45 , pp. 47212-47221
    • Ferrer-Orta, C.1    Arias, A.2    Perez-Luque, R.3    Escarmis, C.4    Domingo, E.5    Verdaguer, N.6
  • 13
    • 0029101761 scopus 로고
    • Antibody recognition of picornaviruses and escape from neutralization: A structural view
    • Mateu MG: Antibody recognition of picornaviruses and escape from neutralization: a structural view. Virus Res 1995, 38(1):1-24.
    • (1995) Virus Res , vol.38 , Issue.1 , pp. 1-24
    • Mateu, M.G.1
  • 15
    • 33745500923 scopus 로고    scopus 로고
    • Diagnosis and control of foot-and-mouth disease. Current Perspectives
    • Edited by: Sobrino, F, Domingo E. Wymondham
    • Kitching RP: Diagnosis and control of foot-and-mouth disease. Current Perspectives. Edited by: Sobrino, F, Domingo E. Wymondham, Horizon Bioscience; 2004:411-424.
    • (2004) Horizon Bioscience , pp. 411-424
    • Kitching, R.P.1
  • 16
    • 25144439135 scopus 로고    scopus 로고
    • Development of a Lightcycler-based reverse transcription polymerase chain reaction for the detection of foot-and-mouth disease virus
    • Oem JK, Kye SJ, Lee KN, Kim YJ, Park JY, Park JH, Joo YS, Song HJ: Development of a Lightcycler-based reverse transcription polymerase chain reaction for the detection of foot-and-mouth disease virus. J Vet Sci 2005, 6(3):207-212.
    • (2005) J Vet Sci , vol.6 , Issue.3 , pp. 207-212
    • Oem, J.K.1    Kye, S.J.2    Lee, K.N.3    Kim, Y.J.4    Park, J.Y.5    Park, J.H.6    Joo, Y.S.7    Song, H.J.8
  • 17
    • 33745493197 scopus 로고    scopus 로고
    • Microarray-based detection and typing of foot-and-mouth disease virus
    • doi:10.1016/j.physletb.2003.10.071
    • Baxi MK, Baxi S, Clavijo A, Burton KM, Deregt D: Microarray-based detection and typing of foot-and-mouth disease virus. Vet Journal 2005:doi:10.1016/j.physletb.2003.10.071.
    • (2005) Vet Journal
    • Baxi, M.K.1    Baxi, S.2    Clavijo, A.3    Burton, K.M.4    Deregt, D.5
  • 19
    • 0042424622 scopus 로고    scopus 로고
    • Microarray analysis of evolution of RNA viruses: Evidence of circulation of virulent highly divergent vaccine-derived polioviruses
    • Cherkasova E, Laassri M, Chizhikov V, Korotkova E, Dragunsky E, Agol VI, Chumakov K: Microarray analysis of evolution of RNA viruses: evidence of circulation of virulent highly divergent vaccine-derived polioviruses. Proc Natl Acad Sci USA 2003, 100(16):9398-9403.
    • (2003) Proc Natl Acad Sci USA , vol.100 , Issue.16 , pp. 9398-9403
    • Cherkasova, E.1    Laassri, M.2    Chizhikov, V.3    Korotkova, E.4    Dragunsky, E.5    Agol, V.I.6    Chumakov, K.7
  • 20
    • 0024578406 scopus 로고
    • The three-dimensional structure of foot-and-mouth disease virus at 2.9 Å resolution
    • Acharya R, Fry E, Stuart D, Fox G, Rowlands D, Brown F: The three-dimensional structure of foot-and-mouth disease virus at 2.9 Å resolution. Nature 1989, 337(6209):709-716.
    • (1989) Nature , vol.337 , Issue.6209 , pp. 709-716
    • Acharya, R.1    Fry, E.2    Stuart, D.3    Fox, G.4    Rowlands, D.5    Brown, F.6
  • 21
    • 33745490264 scopus 로고    scopus 로고
    • Functional and structural aspects of the interaction of foot-and-mouth disease virus with antibodies
    • Edited by: Sobrino F, Domingo E. Wymondham, Horizon Bioscience
    • Mateu MG, Verdaguer N: Functional and structural aspects of the interaction of foot-and-mouth disease virus with antibodies. In Foot-and-Mouth Disease Current Perspectives Edited by: Sobrino F, Domingo E. Wymondham, Horizon Bioscience; 2004:223-260.
    • (2004) Foot-and-Mouth Disease Current Perspectives , pp. 223-260
    • Mateu, M.G.1    Verdaguer, N.2
  • 22
    • 20744443113 scopus 로고    scopus 로고
    • Molecular aspects of foot-and-mouth disease virus virulence and host range: Role of host cell receptors and viral factors
    • Edited by: Sobrino F, Domingo E. Wymondham, Horizon Bioscience
    • Baxt B, Rieder E: Molecular aspects of foot-and-mouth disease virus virulence and host range: Role of host cell receptors and viral factors. In Foot-and-Mouth Disease Current Perspectives Edited by: Sobrino F, Domingo E. Wymondham, Horizon Bioscience; 2004:145-172.
    • (2004) Foot-and-Mouth Disease Current Perspectives , pp. 145-172
    • Baxt, B.1    Rieder, E.2
  • 23
    • 0037227550 scopus 로고    scopus 로고
    • Evidence of the coevolution of antigenicity and host cell tropism of foot-and-mouth disease virus in vivo
    • Tami C, Taboga O, Berinstein A, Nuñez JI, Palma EL, Domingo E, Sobrino, F, Carrillo E: Evidence of the coevolution of antigenicity and host cell tropism of foot-and-mouth disease virus in vivo. J Virol 2003, 77(2):1219-1226.
    • (2003) J Virol , vol.77 , Issue.2 , pp. 1219-1226
    • Tami, C.1    Taboga, O.2    Berinstein, A.3    Nuñez, J.I.4    Palma, E.L.5    Domingo, E.6    Sobrino, F.7    Carrillo, E.8
  • 24
    • 0042134241 scopus 로고    scopus 로고
    • Evolution of cell recognition by viruses: A source of biological novelty with medical implications
    • Baranowski E, Ruíz-Jarabo CM, Pariente N, Verdaguer N, Domingo E: Evolution of cell recognition by viruses: a source of biological novelty with medical implications. Adv Virus Res 2003, 62:19-111.
    • (2003) Adv Virus Res , vol.62 , pp. 19-111
    • Baranowski, E.1    Ruíz-Jarabo, C.M.2    Pariente, N.3    Verdaguer, N.4    Domingo, E.5
  • 25
    • 4043176274 scopus 로고    scopus 로고
    • Expansion of host-cell tropism of foot-and-mouth disease virus despite replication in a constant environment
    • Ruiz-Jarabo CM, Pariente N, Baranowski E, Dávila M, Gómez-Mariano G, Domingo E: Expansion of host-cell tropism of foot-and-mouth disease virus despite replication in a constant environment. J Gen Virol 2004, 85:2289-2297.
    • (2004) J Gen Virol , vol.85 , pp. 2289-2297
    • Ruiz-Jarabo, C.M.1    Pariente, N.2    Baranowski, E.3    Dávila, M.4    Gómez-Mariano, G.5    Domingo, E.6
  • 27
    • 0028618275 scopus 로고
    • Direct fluorescence analysis of genetic polymorphisms by hybridization with oligonucleotide arrays on glass supports
    • Guo Z, Guilfoyle RA, Thiel AJ, Wang R, Smith LM: Direct fluorescence analysis of genetic polymorphisms by hybridization with oligonucleotide arrays on glass supports. Nucleic Acids Res 1994, 22(24):5456-5465.
    • (1994) Nucleic Acids Res , vol.22 , Issue.24 , pp. 5456-5465
    • Guo, Z.1    Guilfoyle, R.A.2    Thiel, A.J.3    Wang, R.4    Smith, L.M.5
  • 28
    • 84872276900 scopus 로고    scopus 로고
    • http://ub.cbm.uam.es/downloads/aftochip5-2-rawfiles.zip.
  • 29
    • 0034010674 scopus 로고    scopus 로고
    • Foot-and-mouth disease virus is a ligand for the high-affinity binding conformation of integrin alpha5beta1: Influence of the leucine residue within the RGDL motif on selectivity of integrin binding
    • Jackson T, Blakemore W, Newman JW, Knowles NJ, Mould AP, Humphries MJ, King AM: Foot-and-mouth disease virus is a ligand for the high-affinity binding conformation of integrin alpha5beta1: influence of the leucine residue within the RGDL motif on selectivity of integrin binding. J Gen Virol 2000, 81(Pt 5):1383-1391.
    • (2000) J Gen Virol , vol.81 , Issue.PART 5 , pp. 1383-1391
    • Jackson, T.1    Blakemore, W.2    Newman, J.W.3    Knowles, N.J.4    Mould, A.P.5    Humphries, M.J.6    King, A.M.7
  • 30
    • 0032848965 scopus 로고    scopus 로고
    • Mutational analysis using oligonucleotide microarrays
    • Hacia JG, Collins FS: Mutational analysis using oligonucleotide microarrays. J Med Genet 1999, 36(10):730-736.
    • (1999) J Med Genet , vol.36 , Issue.10 , pp. 730-736
    • Hacia, J.G.1    Collins, F.S.2
  • 31
    • 0035823170 scopus 로고    scopus 로고
    • Advances in the analysis of DNA sequence variations using oligonucleotide microchip technology
    • Tillib SV, Mirzabekov AD: Advances in the analysis of DNA sequence variations using oligonucleotide microchip technology. Curr Opin Biotechnol 2001, 12(1):53-58.
    • (2001) Curr Opin Biotechnol , vol.12 , Issue.1 , pp. 53-58
    • Tillib, S.V.1    Mirzabekov, A.D.2
  • 33
    • 22144483355 scopus 로고    scopus 로고
    • Oligonucleotide-based microarray: A new improvement in microarray detection of plant viruses
    • Bystricka D, Lenz O, Mraz I, Piherova L, Kmoch S, Sip M: Oligonucleotide-based microarray: a new improvement in microarray detection of plant viruses. J Virol Methods 2005, 128(1-2):176-182.
    • (2005) J Virol Methods , vol.128 , Issue.1-2 , pp. 176-182
    • Bystricka, D.1    Lenz, O.2    Mraz, I.3    Piherova, L.4    Kmoch, S.5    Sip, M.6
  • 35
    • 3142740881 scopus 로고    scopus 로고
    • Use of oligonucleotide microarrays for rapid detection and serotyping of acute respiratory disease-associated adenoviruses
    • Lin B, Vora GJ, Thach D, Walter E, Metzgar D, Tibbetts C, Stenger DA: Use of oligonucleotide microarrays for rapid detection and serotyping of acute respiratory disease-associated adenoviruses. J Clin Microbiol 2004, 42(7):3232-3239.
    • (2004) J Clin Microbiol , vol.42 , Issue.7 , pp. 3232-3239
    • Lin, B.1    Vora, G.J.2    Thach, D.3    Walter, E.4    Metzgar, D.5    Tibbetts, C.6    Stenger, D.A.7
  • 36
    • 9944220448 scopus 로고    scopus 로고
    • Differentiation of Cucumber mosaic virus isolates by hybridization to oligonucleotides in a microarray format
    • Deyong Z, Willingmann P, Heinze C, Adam G, Pfunder M, Frey B, Frey JE: Differentiation of Cucumber mosaic virus isolates by hybridization to oligonucleotides in a microarray format. J Virol Methods 2005, 123(1):101-108.
    • (2005) J Virol Methods , vol.123 , Issue.1 , pp. 101-108
    • Deyong, Z.1    Willingmann, P.2    Heinze, C.3    Adam, G.4    Pfunder, M.5    Frey, B.6    Frey, J.E.7
  • 38
    • 0032503931 scopus 로고    scopus 로고
    • Comparative performance of high-density oligonucleotide sequencing and dideoxynucleotide sequencing of HIV type I pol from clinical samples
    • Günthard HF, Wong JK, Ignacio CC, Havlir DV, Richman DD: Comparative performance of high-density oligonucleotide sequencing and dideoxynucleotide sequencing of HIV type I pol from clinical samples. AIDS Res Hum Retroviruses 1998, 14(10):869-876.
    • (1998) AIDS Res Hum Retroviruses , vol.14 , Issue.10 , pp. 869-876
    • Günthard, H.F.1    Wong, J.K.2    Ignacio, C.C.3    Havlir, D.V.4    Richman, D.D.5
  • 39
  • 43
    • 0020544508 scopus 로고
    • Multiple genetic variants arise in the course of replication of foot-and-mouth disease virus in cell culture
    • Sobrino F, Dávila M, Ortín J, Domingo E: Multiple genetic variants arise in the course of replication of foot-and-mouth disease virus in cell culture. Virology 1983, 128:310-318.
    • (1983) Virology , vol.128 , pp. 310-318
    • Sobrino, F.1    Dávila, M.2    Ortín, J.3    Domingo, E.4
  • 44
    • 0025325915 scopus 로고
    • A single amino acid substitution affects multiple overlapping epitopes in the major antigenic site of foot-and-mouth disease virus of serotype C
    • Mateu MG, Martínez MA, Capucci L, Andreu D, Giralt E, Sobrino F, Brocchi E, Domingo E: A single amino acid substitution affects multiple overlapping epitopes in the major antigenic site of foot-and-mouth disease virus of serotype C. J Gen Virol 1990, 71:629-637.
    • (1990) J Gen Virol , vol.71 , pp. 629-637
    • Mateu, M.G.1    Martínez, M.A.2    Capucci, L.3    Andreu, D.4    Giralt, E.5    Sobrino, F.6    Brocchi, E.7    Domingo, E.8
  • 45
    • 9644273913 scopus 로고    scopus 로고
    • Monitoring sequence space as a test for the target of selection in viruses
    • Perales C, Martin V, Ruiz-Jarabo CM, Domingo E: Monitoring sequence space as a test for the target of selection in viruses. J Mol Biol 2005, 345(3):451-459.
    • (2005) J Mol Biol , vol.345 , Issue.3 , pp. 451-459
    • Perales, C.1    Martin, V.2    Ruiz-Jarabo, C.M.3    Domingo, E.4
  • 47
    • 2542510364 scopus 로고    scopus 로고
    • Human immunodeficiency virus type I genetic evolution in patients with prolonged suppression of plasma viremia
    • Martínez MA, Cabana M, Ibañez A, Clotet B, Arno A, Ruiz L: Human immunodeficiency virus type I genetic evolution in patients with prolonged suppression of plasma viremia. Virology 1999, 256(2):180-187.
    • (1999) Virology , vol.256 , Issue.2 , pp. 180-187
    • Martínez, M.A.1    Cabana, M.2    Ibañez, A.3    Clotet, B.4    Arno, A.5    Ruiz, L.6
  • 51
    • 0003991806 scopus 로고    scopus 로고
    • Statistical learning theory
    • New York, Wiley
    • Vapnik VN: Statistical learning theory. New York, Wiley; 1998.
    • (1998)
    • Vapnik, V.N.1


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