Molecular dynamics simulations and their application to four-stranded DNA

Methods

Volumn 43, Issue 4, 2007, Pages 278-290

  Šponer, Jiří ^a   Špačková, Nad'a ^a  

^a INSTITUTE OF BIOPHYSICS   (Czech Republic)

Author keywords

Channel cations; Empirical force field; Force field approximations; Guanine quadruplex; i DNA; Molecular dynamics simulations; Quadruplex formation; Quadruplex loops

Indexed keywords

DNA; MAGNESIUM ION; PHOSPHATE; POTASSIUM ION; SODIUM ION; SOLVENT; SUGAR;

AB INITIO CALCULATION; ACCURACY; ARTICLE; DENSITY FUNCTIONAL THEORY; DNA DEGRADATION; DNA DETERMINATION; DNA HYBRIDIZATION; DNA PROTEIN COMPLEX; DNA STRAND; ELECTRICITY; ENERGY; HYDROGEN BOND; METHODOLOGY; MOLECULAR DYNAMICS; PRIORITY JOURNAL; SIMULATION; SOLVATION; STRUCTURE ANALYSIS; THERMODYNAMICS;

COMPUTER SIMULATION; DNA; G-QUADRUPLEXES; GUANINE; LIGANDS; MODELS, MOLECULAR; THERMODYNAMICS;

EID: 35448946080     PISSN: 10462023     EISSN: 10959130     Source Type: Journal    
DOI: 10.1016/j.ymeth.2007.02.004     Document Type: Article

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