Structure, dynamics, and elasticity of free 16S rRNA helix 44 studied by molecular dynamics simulations

Biopolymers

Volumn 82, Issue 5, 2006, Pages 504-520

  Réblová, Kamila ^a   Lankaš, Filip ^b   Rázga, Filip ^a   Krasovska, Maryna V ^a   Koča, Jaroslav ^c   Šponer, Jiří ^a  

^a INSTITUTE OF BIOPHYSICS   (Czech Republic)

^b EPFL   (Switzerland)

^c MASARYK UNIVERSITY   (Czech Republic)

Author keywords

Force field; Helix 44; Molecular dynamics simulations; Nanosecond scale dynamics; Ribosome; RNA deformability

Indexed keywords

CONFORMATIONS; ELECTRON MICROSCOPES; MOLECULAR DYNAMICS; NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY; X RAYS;

FORCE FIELD; HELIX 44; MOLECULAR DYNAMICS SIMULATIONS; NANOSECOND SCALE DYNAMICS; RIBOSOMES; RNA DEFORMABILITY;

RNA;

DOUBLE STRANDED RNA; MAGNESIUM ION; PHOSPHATE; RNA 16S;

ARTICLE; BASE PAIRING; CANONICAL ANALYSIS; CHEMICAL STRUCTURE; CONFORMATION; CONFORMATIONAL TRANSITION; CRYOELECTRON MICROSCOPY; CRYSTAL STRUCTURE; ELASTICITY; MOLECULAR DYNAMICS; NONHUMAN; NUCLEAR MAGNETIC RESONANCE; RIBOSOME SUBUNIT; RNA STRUCTURE; RNA TRANSPORT; SIMULATION; THERMUS THERMOPHILUS; X RAY ANALYSIS;

BASE PAIRING; BASE SEQUENCE; BINDING SITES; COMPUTER SIMULATION; CRYSTALLOGRAPHY, X-RAY; HYDROGEN BONDING; MAGNESIUM; MAGNETIC RESONANCE SPECTROSCOPY; MODELS, MOLECULAR; MOLECULAR STRUCTURE; NUCLEIC ACID CONFORMATION; RNA, BACTERIAL; RNA, RIBOSOMAL, 16S; SODIUM; THERMODYNAMICS; THERMUS THERMOPHILUS;

THERMUS THERMOPHILUS;

EID: 33746388359     PISSN: 00063525     EISSN: 10970282     Source Type: Journal    
DOI: 10.1002/bip.20503     Document Type: Article

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