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Volumn 282, Issue 3, 1998, Pages 619-636

Solution structure of a Na cation stabilized DNA quadruplex containing G·G·G·G· and G·C·G·C· tetrads formed by G-G-G-C repeats observed in adeno-associated viral DNA

Author keywords

G G G C repeat containing DNA quadruplexes; G C G C tetrads; G G G G tetrads; Potential Na cation coordination sites

Indexed keywords

CATION; SODIUM; VIRUS DNA;

EID: 0032566629     PISSN: 00222836     EISSN: None     Source Type: Journal    
DOI: 10.1006/jmbi.1998.2030     Document Type: Article
Times cited : (109)

References (61)
  • 2
    • 0342419507 scopus 로고    scopus 로고
    • Three- and four-way junctions in DNA: A conformational viewpoint
    • Altona, C., Pikkematt, J. A. & Overmars, F. J. J. (1996). Three- and four-way junctions in DNA: a conformational viewpoint. Curr. Opin. Struct. Biol. 6, 305-316.
    • (1996) Curr. Opin. Struct. Biol. , vol.6 , pp. 305-316
    • Altona, C.1    Pikkematt, J.A.2    Overmars, F.J.J.3
  • 3
    • 0029257496 scopus 로고
    • The cryptic life cycle of adeno-associated virus
    • Berns, K. I. & Linden, R. M. (1995). The cryptic life cycle of adeno-associated virus. BioEssays, 17, 237-245.
    • (1995) BioEssays , vol.17 , pp. 237-245
    • Berns, K.I.1    Linden, R.M.2
  • 4
    • 0014355039 scopus 로고
    • Epidemiology of adenovirus-associated virus infection in a nursery population
    • Blacklow, N. R., Hoggan, M. D., Kapikian, A. Z., Austin, J. B. & Rowe, W. P. (1968). Epidemiology of adenovirus-associated virus infection in a nursery population. Am. J. Epidemiol. 88, 368-378.
    • (1968) Am. J. Epidemiol. , vol.88 , pp. 368-378
    • Blacklow, N.R.1    Hoggan, M.D.2    Kapikian, A.Z.3    Austin, J.B.4    Rowe, W.P.5
  • 5
    • 0032566709 scopus 로고    scopus 로고
    • A K cation-induced conformational switch within a loop spanning segment of a DNA quadruplex containing G-G-G-C repeats
    • Bouaziz, S., Kettani, A. & Patel, D. J. (1998). A K cation-induced conformational switch within a loop spanning segment of a DNA quadruplex containing G-G-G-C repeats. J. Mol. Biol. 282, 637-652.
    • (1998) J. Mol. Biol. , vol.282 , pp. 637-652
    • Bouaziz, S.1    Kettani, A.2    Patel, D.J.3
  • 7
    • 0030573027 scopus 로고    scopus 로고
    • Structure-function correlations of the insulin-linked polymorphic region
    • Catasti, P., Chen, X., Moyzis, R. K., Bradbury, E. M. & Gupta, G. (1996). Structure-function correlations of the insulin-linked polymorphic region. J. Mol. Biol. 264, 534-545.
    • (1996) J. Mol. Biol. , vol.264 , pp. 534-545
    • Catasti, P.1    Chen, X.2    Moyzis, R.K.3    Bradbury, E.M.4    Gupta, G.5
  • 9
    • 0025649498 scopus 로고
    • Four-stranded nucleic acid structures 25 years later: From guanosine gels to telomeric DNA
    • Guschlbauer, W., Chantot, J. F. & Thiele, D. (1990). Four-stranded nucleic acid structures 25 years later: from guanosine gels to telomeric DNA. J. Biomol. Struct. Dynam. 8, 491-511.
    • (1990) J. Biomol. Struct. Dynam. , vol.8 , pp. 491-511
    • Guschlbauer, W.1    Chantot, J.F.2    Thiele, D.3
  • 10
    • 0023663911 scopus 로고
    • Telomeric DNA oligonucleotides form novel intramolecular structures containing guanine-guanine base-pairs
    • Henderson, E., Hardin, C. C., Walk, S. K., Tinoco, I., Jr & Blackburn, E. H. (1987). Telomeric DNA oligonucleotides form novel intramolecular structures containing guanine-guanine base-pairs. Cell, 51, 899-908.
    • (1987) Cell , vol.51 , pp. 899-908
    • Henderson, E.1    Hardin, C.C.2    Walk, S.K.3    Tinoco Jr., I.4    Blackburn, E.H.5
  • 11
    • 0025362618 scopus 로고
    • The AAV origin binding protein Rep68 is an ATP-dependent site-specific endonuclease with DNA helicase activity
    • Im, D. S. & Muzyczka, N. (1990). The AAV origin binding protein Rep68 is an ATP-dependent site-specific endonuclease with DNA helicase activity. Cell, 61, 447-457.
    • (1990) Cell , vol.61 , pp. 447-457
    • Im, D.S.1    Muzyczka, N.2
  • 12
    • 0030764882 scopus 로고    scopus 로고
    • Ion selective folding of loop domains in a potent anti-HIV oligonucleotide
    • Jing, N., Rando, R. F., Pommier, Y. & Hogan, M. E. (1997). Ion selective folding of loop domains in a potent anti-HIV oligonucleotide. Biochemistry, 36, 12498-12505.
    • (1997) Biochemistry , vol.36 , pp. 12498-12505
    • Jing, N.1    Rando, R.F.2    Pommier, Y.3    Hogan, M.E.4
  • 13
    • 0026591751 scopus 로고
    • Crystal structure of a four-stranded Oxytricha telomeric DNA
    • Kang, C., Zhang, X., Ratliff, R., Moyzis, R. & Rich, A. (1992). Crystal structure of a four-stranded Oxytricha telomeric DNA. Nature, 356, 126-131.
    • (1992) Nature , vol.356 , pp. 126-131
    • Kang, C.1    Zhang, X.2    Ratliff, R.3    Moyzis, R.4    Rich, A.5
  • 15
    • 0029585993 scopus 로고
    • Solution structure of a DNA quadruplex containing the fragile X syndrome triplet repeat
    • Kettani, A., Kumar, R. A. & Patel, D. J. (1995). Solution structure of a DNA quadruplex containing the fragile X syndrome triplet repeat. J. Mol. Biol. 254, 638-656.
    • (1995) J. Mol. Biol. , vol.254 , pp. 638-656
    • Kettani, A.1    Kumar, R.A.2    Patel, D.J.3
  • 16
    • 0030993474 scopus 로고    scopus 로고
    • Bombyx mori single repeat telomeric DNA sequence forms a G-quadruplex capped by base triads
    • Kettani, A., Bouaziz, S., Wang, W., Jones, R. A. & Patel, D. J. (1997). Bombyx mori single repeat telomeric DNA sequence forms a G-quadruplex capped by base triads. Nature Struct. Biol. 4, 382-389.
    • (1997) Nature Struct. Biol. , vol.4 , pp. 382-389
    • Kettani, A.1    Bouaziz, S.2    Wang, W.3    Jones, R.A.4    Patel, D.J.5
  • 17
    • 0024322243 scopus 로고
    • Organization of adeno-associated virus DNA in latently infected Detroit 6 cells
    • Kotin, R. M. & Berns, K. I. (1989). Organization of adeno-associated virus DNA in latently infected Detroit 6 cells. Virology, 170, 460-467.
    • (1989) Virology , vol.170 , pp. 460-467
    • Kotin, R.M.1    Berns, K.I.2
  • 19
    • 0025721086 scopus 로고
    • Mapping and direct visualization of a region-specific viral DNA integration site on chromosome 19q13-qter
    • Kotin, R. M., Menninger, J. C., Ward, D. C. & Berns, K. I. (1991). Mapping and direct visualization of a region-specific viral DNA integration site on chromosome 19q13-qter. Genomics, 10, 831-834.
    • (1991) Genomics , vol.10 , pp. 831-834
    • Kotin, R.M.1    Menninger, J.C.2    Ward, D.C.3    Berns, K.I.4
  • 20
    • 0027092001 scopus 로고
    • Characterization of a preferred site on human chromosome 19q for integration of adeno-associated virus DNA by non-homologous recombination
    • Kotin, R. M., Linden, R. M. & Berns, K. I. (1992). Characterization of a preferred site on human chromosome 19q for integration of adeno-associated virus DNA by non-homologous recombination. EMBO J. 11, 5071-5078.
    • (1992) EMBO J. , vol.11 , pp. 5071-5078
    • Kotin, R.M.1    Linden, R.M.2    Berns, K.I.3
  • 23
    • 0024539180 scopus 로고
    • Defining the structure of irregular nucleic acids: Conventions and principles
    • Lavery, R. & Sklenar, H. (1989). Defining the structure of irregular nucleic acids: conventions and principles. J. Biomol. Struct. Dynam. 6, 655-667.
    • (1989) J. Biomol. Struct. Dynam. , vol.6 , pp. 655-667
    • Lavery, R.1    Sklenar, H.2
  • 26
    • 0014681021 scopus 로고
    • Some aspect of the hydrogen bond in molecular biology
    • Lowdin, P. O. (1969). Some aspect of the hydrogen bond in molecular biology. Ann. New York Acad. Sci. 158, 86-95.
    • (1969) Ann. New York Acad. Sci. , vol.158 , pp. 86-95
    • Lowdin, P.O.1
  • 27
    • 0029964978 scopus 로고    scopus 로고
    • Inhibition of the human immunodeficiency virus type I integrase by guanosine quartet structures
    • Mazumder, A., Neamati, N., Ojwang, J. O., Sunder, S., Rando, R. F. & Pommier, Y. (1996). Inhibition of the human immunodeficiency virus type I integrase by guanosine quartet structures. Biochemistry, 35, 13762-13771.
    • (1996) Biochemistry , vol.35 , pp. 13762-13771
    • Mazumder, A.1    Neamati, N.2    Ojwang, J.O.3    Sunder, S.4    Rando, R.F.5    Pommier, Y.6
  • 28
    • 0015242770 scopus 로고
    • Models of specifically paired (homologous) nucleic acid structures
    • McGavin, S. (1971). Models of specifically paired (homologous) nucleic acid structures. J. Mol. Biol. 55, 293-298.
    • (1971) J. Mol. Biol. , vol.55 , pp. 293-298
    • McGavin, S.1
  • 29
    • 0028805078 scopus 로고
    • 15 forms a heat-stable hairpin containing G(syn)·G(anti) base-pairs
    • 15 forms a heat-stable hairpin containing G(syn)·G(anti) base-pairs. Biochemistry, 34, 12803-12811.
    • (1995) Biochemistry , vol.34 , pp. 12803-12811
    • Mitas, M.1    Yu, A.2    Dill, J.3    Haworth, I.S.4
  • 30
    • 0026319199 scopus 로고
    • Protein folding and association: Insights from the interfacial and thermodynamic properties of hydrocarbons. Proteins: Struct
    • Nicholls, A., Sharp, K. & Honig, B. H. (1991). Protein folding and association: insights from the interfacial and thermodynamic properties of hydrocarbons. Proteins: Struct. Funct. Genet. 11, 281-296.
    • (1991) Funct. Genet. , vol.11 , pp. 281-296
    • Nicholls, A.1    Sharp, K.2    Honig, B.H.3
  • 31
    • 0028907436 scopus 로고
    • Calculation of protein structures with ambiguous distance restraints. Automated assignment of ambiguous NOE cross-peaks and disulfide connectivities
    • Nilges, M. (1995). Calculation of protein structures with ambiguous distance restraints. Automated assignment of ambiguous NOE cross-peaks and disulfide connectivities. J. Mol. Biol. 245, 645-660.
    • (1995) J. Mol. Biol. , vol.245 , pp. 645-660
    • Nilges, M.1
  • 32
    • 0025894164 scopus 로고
    • Relaxation matrix alignment of the solution structure of squash trypsin inhibitor
    • Nilges, M., Habazettl, J., Brunger, A. T. & Holak, T. A. (1991). Relaxation matrix alignment of the solution structure of squash trypsin inhibitor. J. Mol. Biol. 219, 499-510.
    • (1991) J. Mol. Biol. , vol.219 , pp. 499-510
    • Nilges, M.1    Habazettl, J.2    Brunger, A.T.3    Holak, T.A.4
  • 33
    • 0014198814 scopus 로고
    • Crystal structures of two complexes containing guanine and cytosine derivatives
    • O'Brien, E. J. (1967). Crystal structures of two complexes containing guanine and cytosine derivatives. Acta Crystallog. 23, 92-106.
    • (1967) Acta Crystallog. , vol.23 , pp. 92-106
    • O'Brien, E.J.1
  • 34
  • 35
    • 0000066258 scopus 로고
    • Right-handed and left-handed DNA studies of B-DNA and Z-DNA by using proton nuclear Overhauser effect and phosphorus NMR
    • Patel, D. J., Kozlowski, S. A., Nordheim, A. & Rich, A. (1982). Right-handed and left-handed DNA studies of B-DNA and Z-DNA by using proton nuclear Overhauser effect and phosphorus NMR. Proc. Natl Acad. Sci. USA, 79, 1413-1417.
    • (1982) Proc. Natl Acad. Sci. USA , vol.79 , pp. 1413-1417
    • Patel, D.J.1    Kozlowski, S.A.2    Nordheim, A.3    Rich, A.4
  • 36
    • 0002216849 scopus 로고    scopus 로고
    • Structures of guanine-rich and cytosine-rich quadruplexes formed in vitro by telomeric, centromeric and triplet repeat disease DNA sequences
    • (Neidle, S., ed.) Oxford University Press, Oxford, in the press
    • Patel, D. J., Bouaziz, S., Kettani, A. & Wang, Y. (1999). Structures of guanine-rich and cytosine-rich quadruplexes formed in vitro by telomeric, centromeric and triplet repeat disease DNA sequences. In Oxford Handbook of Nucleic Acid Structure (Neidle, S., ed.) Oxford University Press, Oxford, in the press.
    • (1999) Oxford Handbook of Nucleic Acid Structure
    • Patel, D.J.1    Bouaziz, S.2    Kettani, A.3    Wang, Y.4
  • 37
    • 0031576353 scopus 로고    scopus 로고
    • The crystal structure of a parallel-stranded guanine tetraplex at 0.95 Å resolution
    • Phillips, K., Dauter, Z., Murchie, A. I. H., Lilley, D. M. J. & Luisi, B. (1997). The crystal structure of a parallel-stranded guanine tetraplex at 0.95 Å resolution. J. Mol. Biol. 273, 171-182.
    • (1997) J. Mol. Biol. , vol.273 , pp. 171-182
    • Phillips, K.1    Dauter, Z.2    Murchie, A.I.H.3    Lilley, D.M.J.4    Luisi, B.5
  • 38
    • 0029112560 scopus 로고
    • The thermodynamics of DNA structures which contain lesions or guanine tetrads
    • Pilch, D. S., Plum, G. E. & Breslauer, K. J. (1995). The thermodynamics of DNA structures which contain lesions or guanine tetrads. Curr. Opin. Struct. Biol. 5, 334-342.
    • (1995) Curr. Opin. Struct. Biol. , vol.5 , pp. 334-342
    • Pilch, D.S.1    Plum, G.E.2    Breslauer, K.J.3
  • 39
    • 33845555707 scopus 로고
    • Exchangeable proton NMR without base line distortion using strong pulse sequences
    • Plateau, P. & Gueron, M. (1982). Exchangeable proton NMR without base line distortion using strong pulse sequences. J. Am. Chem. Soc. 104, 7310-7311.
    • (1982) J. Am. Chem. Soc. , vol.104 , pp. 7310-7311
    • Plateau, P.1    Gueron, M.2
  • 41
    • 0028781381 scopus 로고
    • DNA triplexes: Solution structures, hydration sites, energetics, interactions and function
    • Radhakrishnan, I. & Patel, D. J. (1994). DNA triplexes: solution structures, hydration sites, energetics, interactions and function. Biochemistry, 33, 11405-11416.
    • (1994) Biochemistry , vol.33 , pp. 11405-11416
    • Radhakrishnan, I.1    Patel, D.J.2
  • 42
    • 0028961595 scopus 로고
    • Suppression of human immunodeficiency virus type 1 activity in vitro by oligonucleotides which form intramolecular tetrads
    • Rando, R. F., Ojwang, J., Elbaggari, A., Reyes, G. R., Tinder, R., McGarth, M. S. & Hogan, M. E. (1995). Suppression of human immunodeficiency virus type 1 activity in vitro by oligonucleotides which form intramolecular tetrads. J. Biol. Chem. 270, 1754-1760.
    • (1995) J. Biol. Chem. , vol.270 , pp. 1754-1760
    • Rando, R.F.1    Ojwang, J.2    Elbaggari, A.3    Reyes, G.R.4    Tinder, R.5    McGarth, M.S.6    Hogan, M.E.7
  • 46
  • 47
    • 0028318093 scopus 로고
    • Three-dimensional solution structure of the thrombin-binding DNA aptamer d(GGTTGGTGTGGTTGG)
    • Schultze, P., Macaya, R. F. & Feigon, J. (1994a). Three-dimensional solution structure of the thrombin-binding DNA aptamer d(GGTTGGTGTGGTTGG). J. Mol. Biol, 235, 1532-1547.
    • (1994) J. Mol. Biol , vol.235 , pp. 1532-1547
    • Schultze, P.1    Macaya, R.F.2    Feigon, J.3
  • 48
    • 0028773155 scopus 로고
    • Refined solution structure of the dimeric quadruplex formed from the Oxytricha telomeric oligonucleotide d(GGGGTTTTGGGG)
    • Schultze, P., Smith, F. W. & Feigon, J. (1994b). Refined solution structure of the dimeric quadruplex formed from the Oxytricha telomeric oligonucleotide d(GGGGTTTTGGGG). Structure, 2, 221-233.
    • (1994) Structure , vol.2 , pp. 221-233
    • Schultze, P.1    Smith, F.W.2    Feigon, J.3
  • 49
    • 0023788886 scopus 로고
    • Formation of parallel four-stranded complexes by guanine-rich motifs in DNA and its implications in meiosis
    • Sen, D. & Gilbert, W. (1988). Formation of parallel four-stranded complexes by guanine-rich motifs in DNA and its implications in meiosis. Nature, 334, 364-366.
    • (1988) Nature , vol.334 , pp. 364-366
    • Sen, D.1    Gilbert, W.2
  • 50
    • 0026554887 scopus 로고
    • Quadruplex structure of Oxytricha telomeric DNA oligonucleotides
    • Smith, F. W. & Feigon, J. (1992). Quadruplex structure of Oxytricha telomeric DNA oligonucleotides. Nature, 356, 164-168.
    • (1992) Nature , vol.356 , pp. 164-168
    • Smith, F.W.1    Feigon, J.2
  • 51
    • 0028173090 scopus 로고
    • 3) forms an asymmetric diagonally looped dimeric quadruplex with guanosine 5′-syn-syn-anti and 5′-syn-anti-anti N-glycosidic conformations
    • 3) forms an asymmetric diagonally looped dimeric quadruplex with guanosine 5′-syn-syn-anti and 5′-syn-anti-anti N-glycosidic conformations. Proc. Natl Acad. Sci. USA, 91, 10546-10550.
    • (1994) Proc. Natl Acad. Sci. USA , vol.91 , pp. 10546-10550
    • Smith, F.W.1    Lau, F.W.2    Feigon, J.3
  • 52
    • 0029645583 scopus 로고
    • Solution structures of unimolecular quadruplexes formed by oligonucleotides containing Oxytricha telomere repeats
    • Smith, F. W., Schultze, P. & Feigon, J. (1995). Solution structures of unimolecular quadruplexes formed by oligonucleotides containing Oxytricha telomere repeats. Structure, 3, 997-1008.
    • (1995) Structure , vol.3 , pp. 997-1008
    • Smith, F.W.1    Schultze, P.2    Feigon, J.3
  • 53
    • 0027197574 scopus 로고
    • Oligonucleotide directed triple helix formation
    • Sun, J. S. & Helene, C. (1993). Oligonucleotide directed triple helix formation. Curr. Opin. Struct. Biol. 3, 345-356.
    • (1993) Curr. Opin. Struct. Biol. , vol.3 , pp. 345-356
    • Sun, J.S.1    Helene, C.2
  • 54
    • 0024843757 scopus 로고
    • Telomeric DNA dimerizes by formation of guanine tetrads between hairpin loops
    • Sundquist, W. I. & Klug, A. (1989). Telomeric DNA dimerizes by formation of guanine tetrads between hairpin loops. Nature, 342, 825-829.
    • (1989) Nature , vol.342 , pp. 825-829
    • Sundquist, W.I.1    Klug, A.2
  • 55
    • 0027380687 scopus 로고
    • The tertiary structure of a DNA aptamer which binds to and inhibits thrombin determining activity
    • Wang, K. Y., Krawczyk, S. H., Bischofberger, N., Swaminathan, S. & Bolton, P. H. (1993). The tertiary structure of a DNA aptamer which binds to and inhibits thrombin determining activity. Biochemistry, 32, 11285-11292.
    • (1993) Biochemistry , vol.32 , pp. 11285-11292
    • Wang, K.Y.1    Krawczyk, S.H.2    Bischofberger, N.3    Swaminathan, S.4    Bolton, P.H.5
  • 56
    • 0027750779 scopus 로고
    • Solution structure of a parallel-stranded G-quadruplex DNA
    • Wang, Y. & Patel, D. J. (1993a). Solution structure of a parallel-stranded G-quadruplex DNA. J. Mol. Biol. 234, 1171-1183.
    • (1993) J. Mol. Biol. , vol.234 , pp. 1171-1183
    • Wang, Y.1    Patel, D.J.2
  • 60
    • 0026316324 scopus 로고
    • Multinuclear nuclear magnetic resonance studies of Na cation-stabilized complex formed by d(G-G-T-T-T-T-C-G-G) in solution
    • Wang, Y., de los Santos, C., Gao, X., Greene, K., Live, D. & Patel, D. J. (1991). Multinuclear nuclear magnetic resonance studies of Na cation-stabilized complex formed by d(G-G-T-T-T-T-C-G-G) in solution. J. Mol. Biol. 222, 819-832.
    • (1991) J. Mol. Biol. , vol.222 , pp. 819-832
    • Wang, Y.1    De Los Santos, C.2    Gao, X.3    Greene, K.4    Live, D.5    Patel, D.J.6
  • 61
    • 0024787884 scopus 로고
    • Monovalent cation-induced structure of telomeric DNA: The G-quartet model
    • Williamson, J. R., Raghuraman, M. K. & Cech, T. R. (1989). Monovalent cation-induced structure of telomeric DNA: the G-quartet model. Cell, 59, 871-880.
    • (1989) Cell , vol.59 , pp. 871-880
    • Williamson, J.R.1    Raghuraman, M.K.2    Cech, T.R.3


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