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Volumn 36, Issue 49, 1997, Pages 15428-15450

Allosteric interactions between DNA strands and monovalent cations in DNA quadruplex assembly: Thermodynamic evidence for three linked association pathways

Author keywords

[No Author keywords available]

Indexed keywords

DNA; EDETIC ACID; GUANINE; LITHIUM; MONOVALENT CATION; POTASSIUM CHLORIDE;

EID: 0030687511     PISSN: 00062960     EISSN: None     Source Type: Journal    
DOI: 10.1021/bi970488p     Document Type: Article
Times cited : (64)

References (54)
  • 1
    • 0024805395 scopus 로고
    • The isochore organization of the human genome
    • Bernardi, G. (1989) The isochore organization of the human genome. Annu. Rev. Genetics 23, 637-661.
    • (1989) Annu. Rev. Genetics , vol.23 , pp. 637-661
    • Bernardi, G.1
  • 2
    • 0005474070 scopus 로고
    • Study Suggests Telomerase Inhibitors Could Be Effective Anticancer Drugs
    • April 25
    • Borman, S. (1994) Study Suggests Telomerase Inhibitors Could Be Effective Anticancer Drugs. Chem. Eng. News, April 25, pp 42-44.
    • (1994) Chem. Eng. News , pp. 42-44
    • Borman, S.1
  • 4
    • 0027319373 scopus 로고
    • Restricted ion flow in the nuclear envelope of cardiac myocytes
    • Bustamante, J. O. (1993) Restricted ion flow in the nuclear envelope of cardiac myocytes. Biophys. J. 64, 1735-1749.
    • (1993) Biophys. J. , vol.64 , pp. 1735-1749
    • Bustamante, J.O.1
  • 6
    • 0013792110 scopus 로고
    • Absorbance and optical rotary dispersion of seven trinucleoside diphosphates
    • Cantor, C. R., & Tinoco, I., Jr. (1965) Absorbance and optical rotary dispersion of seven trinucleoside diphosphates. J. Mol. Biol. 13, 65-77.
    • (1965) J. Mol. Biol. , vol.13 , pp. 65-77
    • Cantor, C.R.1    Tinoco I., Jr.2
  • 7
    • 0014725117 scopus 로고
    • Oligonucleotide interactions. III. Circular dichroism studies of the conformation of deoxynucleotide
    • Cantor, C. R., Warshaw, M. M., & Shapiro, H. (1970) Oligonucleotide interactions. III. Circular dichroism studies of the conformation of deoxynucleotide. Biopolymers 9, 1059-1077.
    • (1970) Biopolymers , vol.9 , pp. 1059-1077
    • Cantor, C.R.1    Warshaw, M.M.2    Shapiro, H.3
  • 8
    • 0014248410 scopus 로고
    • Allosteric interactions in aspartate transcarbamylase. III. Interpretation of Experimental Data in Terms of the Model of Monod, Wyman, and Changeux
    • Changeux, J.-P., & Rubin, M. M. (1968) Allosteric interactions in aspartate transcarbamylase. III. Interpretation of Experimental Data in Terms of the Model of Monod, Wyman, and Changeux. Biochemistry 7, 553-561.
    • (1968) Biochemistry , vol.7 , pp. 553-561
    • Changeux, J.-P.1    Rubin, M.M.2
  • 9
    • 0026737313 scopus 로고
    • Solution Structure of an Unusually Stable RNA Tetraplex Containing G- and U-Quartet Structures
    • Cheong, C., & Moore, P. B. (1992) Solution Structure of an Unusually Stable RNA Tetraplex Containing G- and U-Quartet Structures. Biochemistry 31, 8406-8414.
    • (1992) Biochemistry , vol.31 , pp. 8406-8414
    • Cheong, C.1    Moore, P.B.2
  • 10
    • 0014940778 scopus 로고
    • The influence of binding domains on the nature of subunit interactions in oligomeric proteins
    • Cornish-Bowden, A., & Koshland, D. E., Jr. (1970) The influence of binding domains on the nature of subunit interactions in oligomeric proteins. J. Biol. Chem. 245, 6241-6250.
    • (1970) J. Biol. Chem. , vol.245 , pp. 6241-6250
    • Cornish-Bowden, A.1    Koshland D.E., Jr.2
  • 11
    • 0016808110 scopus 로고
    • Diagnostic uses of the Hill (Logit and Nernst) plots
    • Cornish-Bowden, A., & Koshland, D. E., Jr. (1975) Diagnostic uses of the Hill (Logit and Nernst) plots. J. Mol. Biol. 95, 201-212.
    • (1975) J. Mol. Biol. , vol.95 , pp. 201-212
    • Cornish-Bowden, A.1    Koshland D.E., Jr.2
  • 12
    • 0028564951 scopus 로고
    • Specific association of human telomerase activity with immortal cells and cancer
    • Coviello, G. M., Wright, W. E., Weinreich, S. L., & Shay, J. W. (1994) Specific association of human telomerase activity with immortal cells and cancer. Science 266, 2011-2015.
    • (1994) Science , vol.266 , pp. 2011-2015
    • Coviello, G.M.1    Wright, W.E.2    Weinreich, S.L.3    Shay, J.W.4
  • 13
    • 0014243665 scopus 로고
    • Temperature-dependent properties of dinucleoside phosphates
    • Davis, C. R., & Tinoco, I., Jr. (1968) Temperature-dependent properties of dinucleoside phosphates. Biopolymers 6, 223-242.
    • (1968) Biopolymers , vol.6 , pp. 223-242
    • Davis, C.R.1    Tinoco I., Jr.2
  • 14
    • 0029074362 scopus 로고
    • Duplex to quadruplex equilibrium of the self-complementary oligonucleotide d(GGGGC-CCC)
    • Deng, H., & Braunlin, W. H. (1995) Duplex to quadruplex equilibrium of the self-complementary oligonucleotide d(GGGGC-CCC). Biopolymers 35, 677-681.
    • (1995) Biopolymers , vol.35 , pp. 677-681
    • Deng, H.1    Braunlin, W.H.2
  • 15
    • 0025370815 scopus 로고
    • Dominant Forces in Protein Folding
    • Dill, K. A. (1990) Dominant Forces in Protein Folding. Biochemistry 29, 1133-1155.
    • (1990) Biochemistry , vol.29 , pp. 1133-1155
    • Dill, K.A.1
  • 16
    • 0027220845 scopus 로고
    • The β subunit of Oxytricha telomere-binding protein promotes G-quartet formation by telomeric DNA
    • Fang, G., & Cech, T. R. (1993a) The β subunit of Oxytricha telomere-binding protein promotes G-quartet formation by telomeric DNA. Cell 74, 875-885.
    • (1993) Cell , vol.74 , pp. 875-885
    • Fang, G.1    Cech, T.R.2
  • 17
    • 0027520196 scopus 로고
    • Characterization of a G-Quartet Formation Reaction Promoted by the β Subunit of the Oxytricha Telomere-Binding Protein
    • Fang, G., & Cech, T. R. (1993b) Characterization of a G-Quartet Formation Reaction Promoted by the β Subunit of the Oxytricha Telomere-Binding Protein. Biochemistry 32, 11646-11657.
    • (1993) Biochemistry , vol.32 , pp. 11646-11657
    • Fang, G.1    Cech, T.R.2
  • 18
    • 0025312728 scopus 로고
    • A genetic model for colorectal tumorigenesis
    • Fearon, E. R., & Vogelstein, B. (1990) A genetic model for colorectal tumorigenesis. Cell 61, 759-767.
    • (1990) Cell , vol.61 , pp. 759-767
    • Fearon, E.R.1    Vogelstein, B.2
  • 20
    • 0028246339 scopus 로고
    • The yeast telomere-binding protein RAP1 binds to and promotes the formation of DNA quadruplexes in telomeric DNA
    • Giraldo, R., & Rhodes, D. (1994) The yeast telomere-binding protein RAP1 binds to and promotes the formation of DNA quadruplexes in telomeric DNA. EMBO J. 13, 2411-2420.
    • (1994) EMBO J. , vol.13 , pp. 2411-2420
    • Giraldo, R.1    Rhodes, D.2
  • 21
    • 0014245160 scopus 로고
    • Topography of nucleic acid helices in solutions. II Interactions of spermine and spermidine derivatives with polyadenylic-polyuridylic and polyinosinic-polycytidylic acid helices
    • Glaser, R., & Gabbay, E. J. (1964) Topography of nucleic acid helices in solutions. II Interactions of spermine and spermidine derivatives with polyadenylic-polyuridylic and polyinosinic-polycytidylic acid helices. Biopolymers 6, 243-254.
    • (1964) Biopolymers , vol.6 , pp. 243-254
    • Glaser, R.1    Gabbay, E.J.2
  • 22
    • 0029080864 scopus 로고
    • Thermodynamic mapping of the inhibitor site of the aspartic protease endothiapepsin
    • Gomez, J., & Friere E. (1995) Thermodynamic mapping of the inhibitor site of the aspartic protease endothiapepsin. J. Mol. Biol. 252, 337-350.
    • (1995) J. Mol. Biol. , vol.252 , pp. 337-350
    • Gomez, J.1    Friere, E.2
  • 23
    • 0027207078 scopus 로고
    • Effect of Thymine Tract Length on the Structure and Stability of Model Telomere Sequences
    • Guo, Q., Lu, M., & Kallenbach, N. R. (1993) Effect of Thymine Tract Length on the Structure and Stability of Model Telomere Sequences. Biochemistry 32, 3596-3603.
    • (1993) Biochemistry , vol.32 , pp. 3596-3603
    • Guo, Q.1    Lu, M.2    Kallenbach, N.R.3
  • 24
    • 0025896273 scopus 로고
    • Monovalent Cation-Induced Structural Transitions in Telomeric DNAs: G-DNA Folding Intermediates
    • Hardin, C. C., Henderson, E., Watson, T., & Prosser, J. (1991) Monovalent Cation-Induced Structural Transitions in Telomeric DNAs: G-DNA Folding Intermediates. Biochemistry 30, 4460-4472.
    • (1991) Biochemistry , vol.30 , pp. 4460-4472
    • Hardin, C.C.1    Henderson, E.2    Watson, T.3    Prosser, J.4
  • 26
    • 0027156425 scopus 로고
    • Cytosine·Cytosine Base-Pairing Stabilizes DNA Quadruplexes and Cytosine Methylation Greatly Enhances the Effect
    • Hardin, C. C., Corregan, M., Brown, B. A., II, & Frederick, L. (1993) Cytosine·Cytosine Base-Pairing Stabilizes DNA Quadruplexes and Cytosine Methylation Greatly Enhances the Effect. Biochemistry 32, 5870-5880.
    • (1993) Biochemistry , vol.32 , pp. 5870-5880
    • Hardin, C.C.1    Corregan, M.2    Brown B.A. II3    Frederick, L.4
  • 28
    • 0024573115 scopus 로고
    • An overhanging 3′ terminus is a conserved feature of telomeres
    • Henderson, E. R., & Blackburn, E. H. (1989) An overhanging 3′ terminus is a conserved feature of telomeres. Mol. Cell. Biol. 9, 345-348.
    • (1989) Mol. Cell. Biol. , vol.9 , pp. 345-348
    • Henderson, E.R.1    Blackburn, E.H.2
  • 29
    • 0022805481 scopus 로고
    • A theoretical study of cooperative dual linear aggregation and the vernier effect
    • Hill, T. L. (1986) A theoretical study of cooperative dual linear aggregation and the vernier effect. Biophys. Chem. 25, 1-15.
    • (1986) Biophys. Chem. , vol.25 , pp. 1-15
    • Hill, T.L.1
  • 30
    • 84985734018 scopus 로고
    • A stereospecific complex of poly (I) with ammonium ion
    • Howard, F. B. & Miles, H. T. (1982) A stereospecific complex of poly (I) with ammonium ion. Biopolymers 21, 147-157.
    • (1982) Biopolymers , vol.21 , pp. 147-157
    • Howard, F.B.1    Miles, H.T.2
  • 32
    • 0025202253 scopus 로고
    • Tetraplex formation of a guanine-containing nonameric DNa fragment
    • Jin, R., Breslauer, K. J., Jones, R. A., & Gaffney, B. L. (1990) Tetraplex formation of a guanine-containing nonameric DNA fragment. Science 250, 543-546.
    • (1990) Science , vol.250 , pp. 543-546
    • Jin, R.1    Breslauer, K.J.2    Jones, R.A.3    Gaffney, B.L.4
  • 33
    • 0028961229 scopus 로고
    • Single strand targeted triplex-formation. Destabilization of guanine quadruplex structures by foldback triplex-forming oligonucleotides
    • Kandimalla, E. R., & Agrawal, S. (1995) Single strand targeted triplex-formation. Destabilization of guanine quadruplex structures by foldback triplex-forming oligonucleotides. Nucleic Acids Res. 23, 1068-1074.
    • (1995) Nucleic Acids Res. , vol.23 , pp. 1068-1074
    • Kandimalla, E.R.1    Agrawal, S.2
  • 37
    • 0023406843 scopus 로고
    • Calculating Thermodynamic Data for Transitions of Any Molecularity from Equilibrium Melting Curves
    • Marky, L. A., & Breslauer, K. J. (1987) Calculating Thermodynamic Data for Transitions of Any Molecularity from Equilibrium Melting Curves. Biopolymers 26, 1601-1620.
    • (1987) Biopolymers , vol.26 , pp. 1601-1620
    • Marky, L.A.1    Breslauer, K.J.2
  • 38
    • 0025894005 scopus 로고
    • Ion channels in murine nuclei during early development and in fully differentiated adult
    • Mazzanti, M., DeFelice, L. J., & Smith, E. F. (1991) Ion channels in murine nuclei during early development and in fully differentiated adult. Membr. Biol. 121, 189-198.
    • (1991) Membr. Biol. , vol.121 , pp. 189-198
    • Mazzanti, M.1    Defelice, L.J.2    Smith, E.F.3
  • 39
    • 0029071176 scopus 로고
    • A phase diagram for sodium and potassium ion control of polymorphism in telomeric DNA
    • Miura, T., Benevides, J. M., & Thomas, G. J., Jr. (1995) A phase diagram for sodium and potassium ion control of polymorphism in telomeric DNA. J. Mol. Biol. 248, 233-238.
    • (1995) J. Mol. Biol. , vol.248 , pp. 233-238
    • Miura, T.1    Benevides, J.M.2    Thomas G.J., Jr.3
  • 40
    • 0028908671 scopus 로고
    • Competitive Triplex/ Quadruplex Equilibria Involving Guanine-Rich Oligonucleotides
    • Olivas, W. M., & Maher, L. J., III (1995) Competitive Triplex/ Quadruplex Equilibria Involving Guanine-Rich Oligonucleotides. Biochemistry 34, 278-284.
    • (1995) Biochemistry , vol.34 , pp. 278-284
    • Olivas, W.M.1    Maher L.J. III2
  • 41
    • 0017146579 scopus 로고
    • Ion effects on ligand nucleic acid interactions
    • Record, M. T., Jr., Lohman, T. M., & de Haseth, P. (1976) Ion effects on ligand nucleic acid interactions. J. Mol. Biol. 107, 145-158.
    • (1976) J. Mol. Biol. , vol.107 , pp. 145-158
    • Record M.T., Jr.1    Lohman, T.M.2    De Haseth, P.3
  • 42
    • 0028086928 scopus 로고
    • Ion-Induced Stabilization of the G-DNA Quadruplex: Free Energy Perturbation Studies
    • Ross, W. S., & Hardin, C. C. (1994) Ion-Induced Stabilization of the G-DNA Quadruplex: Free Energy Perturbation Studies. J. Am. Chem. Soc. 116, 6070-6080.
    • (1994) J. Am. Chem. Soc. , vol.116 , pp. 6070-6080
    • Ross, W.S.1    Hardin, C.C.2
  • 44
    • 0343820832 scopus 로고    scopus 로고
    • Duke University, Nov. 7, 1995
    • Schultz, S. et al. (1997) Described in seminar by Prof. T. R. Cech, Duke University, Nov. 7, 1995; see http://www.Colorado.EDU/ Chemistry/grad/faculty/Schultz/Schultz.html.
    • (1997) Described in Seminar by Prof. T. R. Cech
    • Schultz, S.1
  • 45
    • 0025269255 scopus 로고
    • A potassium switch in the formation of four-stranded G4-DNA
    • Sen, D., & Gilbert, W. (1990) A potassium switch in the formation of four-stranded G4-DNA. Nature 344, 410-414.
    • (1990) Nature , vol.344 , pp. 410-414
    • Sen, D.1    Gilbert, W.2
  • 46
    • 0027716637 scopus 로고
    • Equilibrium Association Constants for Oligonucleotide-Directed Triple Helix Formation at Single DNA Sites: Linkage to Cation Valence and Concentration
    • Singleton, S. F., & Dervan, P. B. (1993) Equilibrium Association Constants for Oligonucleotide-Directed Triple Helix Formation at Single DNA Sites: Linkage to Cation Valence and Concentration. Biochemistry 32, 13171-13179.
    • (1993) Biochemistry , vol.32 , pp. 13171-13179
    • Singleton, S.F.1    Dervan, P.B.2
  • 47
  • 48
    • 0025875214 scopus 로고
    • The contribution of DNA single-stranded order to the thermodynamics of duplex formation
    • Vesnaver, G., & Breslauer, K. J. (1991) The contribution of DNA single-stranded order to the thermodynamics of duplex formation. Proc. Natl Acad. Sci. U.S.A. 88, 3569-3573.
    • (1991) Proc. Natl Acad. Sci. U.S.A. , vol.88 , pp. 3569-3573
    • Vesnaver, G.1    Breslauer, K.J.2
  • 49
    • 0026687030 scopus 로고
    • 4) Form Parallel-Stranded Potassium Cation Stabilized G-Quadruplexes with Anti Glycosidic Torsion Angles in Solution
    • 4) Form Parallel-Stranded Potassium Cation Stabilized G-Quadruplexes with Anti Glycosidic Torsion Angles in Solution. Biochemistry 31, 8112-8119.
    • (1992) Biochemistry , vol.31 , pp. 8112-8119
    • Wang, Y.1    Patel, D.J.2
  • 50
    • 0024328777 scopus 로고
    • Laser Temperature-Jump, Spectroscopic, and Thermodynamic Study of Salt Effects on Duplex Formation by dGCATGC
    • Williams, A. P., Longfellow, C. E., Freier, S. P., Kierzek, R., & Turner, D. H. (1989) Laser Temperature-Jump, Spectroscopic, and Thermodynamic Study of Salt Effects on Duplex Formation by dGCATGC. Biochemistry 28, 4283-4291.
    • (1989) Biochemistry , vol.28 , pp. 4283-4291
    • Williams, A.P.1    Longfellow, C.E.2    Freier, S.P.3    Kierzek, R.4    Turner, D.H.5
  • 52
    • 0030015009 scopus 로고    scopus 로고
    • Kinetics of G-Quartet-Mediated Tetramer Formation
    • Wyatt, J. R., Davis, P. W., & Freier, S. M. (1996) Kinetics of G-Quartet-Mediated Tetramer Formation. Biochemistry 35, 8002-8008.
    • (1996) Biochemistry , vol.35 , pp. 8002-8008
    • Wyatt, J.R.1    Davis, P.W.2    Freier, S.M.3
  • 53
    • 0004244695 scopus 로고
    • University Science Books, Mill Valley, CA
    • Wyman, J., & Gill, S. J. (1990) Binding and Linkage, University Science Books, Mill Valley, CA.
    • (1990) Binding and Linkage
    • Wyman, J.1    Gill, S.J.2
  • 54
    • 0027771128 scopus 로고
    • Selective Localization and Rotational Immobilization of Univalent Cations on Quadruplex DNA
    • Xu, Q., Deng, H., & Braunlin, W. H. (1993) Selective Localization and Rotational Immobilization of Univalent Cations on Quadruplex DNA. Biochemistry 32, 13130-13137.
    • (1993) Biochemistry , vol.32 , pp. 13130-13137
    • Xu, Q.1    Deng, H.2    Braunlin, W.H.3


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