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Journal of Molecular Structure: THEOCHEM

Volumn 573, Issue 1-3, 2001, Pages 43-53

Hydrogen bonding, stacking and cation binding of DNA bases

(3) Šponer, Jiří a Leszczynski, Jerzy b Hobza, Pavel a

a J HEYROVSKÝ INSTITUTE OF PHYSICAL CHEMISTRY (Czech Republic)

b JACKSON STATE UNIVERSITY (United States)

Author keywords

Cation interactions; Computational study; DNA bases; Hydrogen bonding; Stacking

Indexed keywords

CATION; DNA BASE; NUCLEIC ACID BASE;

BASE PAIRING; CHEMICAL STRUCTURE; CRYSTAL STRUCTURE; DENSITY GRADIENT; DNA BINDING; DNA STRUCTURE; HYDROGEN BOND; MOLECULAR DYNAMICS; MOLECULAR INTERACTION; PROTEIN INTERACTION; QUANTUM CHEMISTRY; REVIEW;

EID: 0035955529 PISSN: 01661280 EISSN: None Source Type: Journal
DOI: 10.1016/S0166-1280(01)00537-1 Document Type: Article

Times cited : (124)

References (119)

1
- 0022651289
- (1986) J. Biomol. Struct. Dyn. , vol.3 , pp. 739
- Poltev, V.I.¹ Shulyupina, N.V.²

2
- 33748621478
- (1996) J. Phys. Chem. , vol.100 , pp. 5590
- Sponer, J.¹ Leszczynski, J.² Hobza, P.³

3
- 0028823008
- (1995) Biophys. J. , vol.69 , pp. 2661
- Schneider, B.¹ Berman, H.M.²

4
- 0019843568
- (1981) J. Mol. Biol. , vol.151 , pp. 535
- Drew, H.R.¹ Dickerson, R.E.²

5
- 0033802198
- (2000) Coord. Chem. Rev. , vol.200 , pp. 487
- Lippert, B.¹

6
- 0000448926
- Interactions of metal ions with nucleotides, nucleic acids and their constituents
- A. Sigel, H. Sigel (Eds.), Marcel Dekker, New York
- (1966) Metal Ions in Biological Systems , vol.32
- Lippert, B.¹

7
- 0000803715
- (1987) J. Am. Chem. Soc. , vol.109 , pp. 1302
- Hobza, P.¹ Sandorfy, C.²

8
- 0014980698
- (1971) Biopolymers , vol.10 , pp. 175
- Bugg, C.E.¹ Thomas, J.M.² Sundaralingam, M.³ Rao, S.T.⁴

9
- 0027318463
- (1993) J. Mol. Biol. , vol.230 , pp. 1025
- Hunter, C.A.¹

10
- 0030905954
- (1997) Biophys. J. , vol.73 , pp. 76
- Sponer, J.¹ Gabb, H.A.² Leszczynski, J.³ Hobza, P.⁴

11
- 0034672031
- (2000) Nucl. Acids Res. , vol.28 , pp. 4893
- Sponer, J.¹ Florian, J.² Ng, H.-L.³ Sponer, J.E.⁴ Spackova, N.⁵

12
- 0018471205
- (1979) Biopolymers , vol.18 , pp. 1149
- Yanson, I.K.¹ Teplitsky, A.B.² Sukhodub, L.F.³

13
- 0000803631
- (1995) Science , vol.269 , pp. 1707
- Desfrancois, C.¹ Abdoul-Carime, H.² Schulz, C.P.³ Schermann, J.P.⁴

14
- 0032560994
- (1998) J. Am. Chem. Soc. , vol.120 , pp. 9605
- Schnier, P.D.¹ Klassen, J.S.² Stritmatter, E.F.³ Williams, E.R.⁴

15
- 0033615289
- (1999) J. Am. Chem. Soc. , vol.121 , pp. 8864
- Hoyau, S.¹ Norrman, K.² McMahon, T.B.³ Ohanessian, G.⁴

16
- 0034700502
- (2000) Nature , vol.408 , pp. 949
- Nir, E.¹ Kleinermanns, K.² De Vries, M.S.³

17
- 0000259941
- (1998) J. Phys. Chem. A , vol.102 , pp. 6921
- Kratochvil, M.¹ Engkvist, O.² Sponer, J.³ Jungwirth, P.⁴ Hobza, P.⁵

18
- 0034639974
- (2000) J. Am. Chem. Soc. , vol.122 , pp. 3495
- Kratochvil, M.¹ Sponer, J.² Hobza, P.³

19
- 84931181290
- (1966) Naturforsf. B: Anorg. Chem. Org. Chem. , vol.21 b , pp. 209
- Kuechler, E.¹ Derkosch, J.²

20
- 0000073638
- (1966) Can. J. Chem. , vol.44 , pp. 1045
- Pitha, J.¹ Jones, R.N.² Pithova, P.³

21
- 33947485013
- (1963) J. Am. Chem. Soc. , vol.85 , pp. 1289
- Ts'o, P.O.P.¹ Melvin, I.S.² Olson, A.C.³

22
- 0031541394
- and references therein
- (1997) Biopolymers , vol.42 , pp. 783
- Gray, D.M.¹

23
- 0032539693
- (1998) Proc. Natl. Acad. Sci. USA , vol.95 , pp. 1460
- SantaLucia J., Jr.¹

24
- 0001543861
- (1994) J. Am. Chem. Soc. , vol.116 , pp. 4993
- Newcomb, L.F.¹ Gellman, S.H.²

25
- 0347933768
- (1997) J. Chem. Soc Park. Tr. , vol.2 , pp. 2319
- Sartorius, J.¹ Schneider, H.-J.²

26
- 0000044474
- (1999) Inorg. Chem. , vol.38 , pp. 420
- Mizutani, M.¹ Kubo, I.² Jitsukawa, H.³ Masuda, H.⁴

27
- 0032102940
- (1998) Nucl. Acids Res. , vol.26 , pp. 2694
- Allawi, H.T.¹ Santalucia, J.²

28
- 0033565267
- (1999) Nucl. Acids Res. , vol.27 , pp. 2957
- Nakano, S.¹ Fujimoto, M.² Hara, H.³ Sugimoto, N.⁴

29
- 0034194135
- (2000) Nucl. Acid Res. , vol.28 , pp. 1929
- Bommarito, S.¹ Peyret, N.² SantaLucia, J.³

30
- 84961981091
- (1999) Chem. Rev. , vol.99 , pp. 2161
- Cramer, C.J.¹ Truhlar, D.G.²

31
- 84962425623
- (1997) Theor. Chem. Acc. , vol.96 , pp. 105
- Luque, F.J.¹ LopezBes, J.M.² Cemeli, J.³ Aroztegui, M.⁴ Orozco, M.⁵

32
- 84962349365
- and references therein
- (1999) J. Phys. Chem. B , vol.103 , pp. 884
- Florian, J.¹ Sponer, J.² Warshel, A.³

33
- 0021345825
- (1984) J. Am. Chem. Soc. , vol.10 , pp. 402
- Pohorille, A.¹ Burt, S.K.² MacElroy, R.D.³

34
- 0021217909
- (1984) J. Biomol. Struct. Dyn. , vol.2 , pp. 119
- Danilov, V.I.¹ Tolokh, I.S.²

35
- 0000124747
- (1988) J. Am. Chem. Soc. , vol.110 , pp. 3334
- Cieplak, P.¹ Kollman, P.A.²

36
- 0029118487
- (1995) Biophys. J. , vol.69 , pp. 1528
- Friedman, R.A.¹ Honig, B.²

37
- 0000435148
- (1998) J. Phys. Chem. B , vol.102 , pp. 6139
- Arora, N.¹ Jayram, B.²

38
- 0035132660
- (2001) Biophys. J. , vol.80 , pp. 140
- Luo, R.¹ Gilson, H.S.R.² Potter, M.J.³ Gilson, M.K.⁴

39
- 0034320964
- (2000) J. Phys. Chem. B , vol.104 , pp. 10092
- Florian, J.¹ Goodman, M.F.² Warshel, A.³

40
- 84962339749
- (1999) J. Biomol. Struct. Dyn. , vol.16 , pp. 1119
- Barsky, D.¹ Kool, E.T.² Colvin, M.E.³

41
- 0033749539
- (2000) Ind. J. Chem. A , vol.39 , pp. 132
- Sivanesan, D.¹ Subramanian, V.² Nair, B.U.³ Ramasami, T.⁴

42
- 0034326833
- (2000) Phys. Chem. Chem. Phys. , vol.2 , pp. 4906
- Kabelac, M.¹ Ryjacek, F.² Hobza, P.³

43
- 0034323550
- (2000) J. Phys. Chem. A , vol.104 , pp. 10887
- Sivanesan, D.¹ Babu, K.² Gadre, S.R.³ Subramanian, V.⁴

44
- 0000921920
- (2000) J. Biomol. Struct. Dyn. Conversation , vol.11 , Issue.2 , pp. 383
- Sponer, J.¹ Berger, I.² Spackova, N.³ Leszczynski, J.⁴ Hobza, P.⁵

45
- 0029788346
- (1996) J. Biomol. Struct. Dyn. , vol.14 , pp. 117
- Sponer, J.¹ Leszczynski, J.² Hobza, P.³

46
- 0001828655
- J. Leszczynski (Ed.), World Scientific, Singapore
- (1996) Computational Chemistry - Reviews of Current Trends , pp. 185
- Sponer, J.¹ Leszczynski, J.² Hobza, P.³

47
- 0001966272
- P.v.R. Schleyer, N.L. Allinger, T. Clark, J. Gasteiger, P.A. Kollman, H.F. Schaefer, III, P.R. Schreiner (Eds.), John Wiley & Sons Chichester, UK
- (1998) Encyclopedia of Computational Chemistry , pp. 777
- Sponer, J.¹ Hobza, P.²

48
- 77956678366
- J. Leszczynski (Ed.), Elsevier, Amsterdam
- (1999) Theoret. Comput. Chem. Vol. 8, Computational Molecular Biology , vol.8 , pp. 85
- Sponer, J.¹ Leszczynski, J.² Hobza, P.³

49
- 0000965687
- (1999) Chem. Rev. , vol.99 , pp. 3247
- Hobza, P.¹ Šponer, J.²

50
- 0003182729
- (1992) Int. J. Quantum Chem. Quantum Biol. Symp. , vol.19 , pp. 43
- Leszczynski, J.¹

51
- 33751158761
- (1994) J. Phys. Chem. , vol.98 , pp. 3161
- Sponer, J.¹ Hobza, P.²

52
- 0000155130
- (1996) J. Chem. Phys. , vol.105 , pp. 11042
- Bludsky, O.¹ Sponer, J.² Leszczynski, J.³ Spirko, V.⁴ Hobza, P.⁵

53
- 0001510143
- (1996) Int. J. Quantum Chem. , vol.57 , pp. 959
- Sponer, J.¹ Hobza, P.²

54
- 0028005530
- (1994) J. Am. Chem. Soc. , vol.116 , pp. 709
- Sponer, J.¹ Hobza, P.²

55
- 0029869883
- (1996) J. Biomol. Struct. Dyn. , vol.13 , pp. 827
- Sponer, J.¹ Florian, J.² Leszczynski, J.³ Hobza, P.⁴

56
- 0032568852
- (1998) J. Mol. Biol. , vol.279 , pp. 1123
- Luisi, B.¹ Orozco, M.² Sponer, J.³ Luque, F.J.⁴ Shakked, Z.⁵

57
- 0033554872
- (1999) Biochemistry , vol.38 , pp. 16443
- Vlieghe, D.¹ Sponer, J.² Van Meervelt, L.³

58
- 0027952736
- (1994) Int. J. Biol. Macromol. , vol.16 , pp. 3
- Sponer, J.¹ Kypr, J.²

59
- 0034249870
- (2000) J. Phys. Chem. B , vol.104 , pp. 7535
- Sponer, J.¹ Sabat, M.² Gorb, L.³ Leszczynski, J.⁴ Lippert, B.⁵ Hobza, P.⁶

60
- 0032508869
- (1998) J. Am. Chem. Soc. , vol.120 , pp. 11226
- Soliva, R.¹ Laughton, C.A.² Luque, F.J.³ Orozco, M.⁴

61
- 0039335080
- (2000) J. Am. Chem. Soc. , vol.122 , pp. 5025
- Stefl, R.¹ Koca, J.²

62
- 0011824888
- (1996) J. Phys. Chem. , vol.100 , pp. 1965
- Sponer, J.¹ Leszczynski, J.² Hobza, P.³

63
- 0029998770
- (1996) J. Biomol. Struct. Dyn. , vol.13 , pp. 695
- Sponer, J.¹ Leszczynski, J.² Vetterl, V.³ Hobza, P.⁴

64
- 0031553237
- (1997) J. Phys. Chem. A , vol.101 , pp. 9489
- Sponer, J.¹ Leszczynski, J.² Hobza, P.³

65
- 0030992422
- (1997) J. Biomol. Struct. Dyn. , vol.14 , pp. 613
- Sponer, J.¹ Burda, J.V.² Mejzlik, P.³ Leszczynski, J.⁴ Hobza, P.⁵

66
- 0032523296
- (1998) Chem. Phys. Lett. , vol.288 , pp. 7
- Hobza, P.¹ Sponer, J.²

67
- 0034225880
- (2000) J. Phys. Chem. B , vol.104 , pp. 6286
- Hobza, P.¹ Sponer, J.² Cubero, E.³ Orozco, M.⁴ Luque, F.J.⁵

68
- 0031581977
- (1997) Chem. Phys. Lett. , vol.267 , pp. 263
- Sponer, J.¹ Hobza, P.²

69
- 0000875282
- (2000) J. Phys. Chem. A , vol.104 , pp. 4592
- Sponer, J.¹ Hobza, P.²

70
- 0001678824
- (1997) J. Phys. Chem. B , vol.101 , pp. 4851
- Brameld, K.¹ Dasgupta, S.² Goddard III, W.A.³

71
- 0343213055
- (1997) J. Comput. Chem. , vol.18 , pp. 1136
- Hobza, P.¹ Kabelac, M.² Šponer, J.³ Mejzlik, P.⁴ Vondrasek, J.⁵

72
- 2442441576
- (1985) J. Mol. Struct. , vol.121 , pp. 185
- Kroon-Batenburg, L.M.J.¹ Van Duijneveldt, F.B.²

73
- 0001246313
- (1994) Chem. Rev. , vol.94 , pp. 1873
- Van Duineveldt, F.B.¹ Van Duineveldt-van de Rijdt, J.G.C.M.² Van Lenthe, J.H.³

74
- 0001225025
- (1996) J. Comput. Chem. , vol.17 , pp. 841
- Šponer, J.¹ Leszczynski, J.² Hobza, P.³

75
- 0035932162
- (2001) J. Chem. Phys. , vol.114 , pp. 5149
- Elstner, M.¹ Hobza, P.² Frauenheim, F.³ Suhai, S.⁴ Kaxiras, E.⁵

76
- 0031250361
- (1997) J. Chem. Phys. A , vol.101 , pp. 7818
- Wesolowski, T.A.¹ Parisel, O.² Ellinger, Y.³ Weber, J.⁴

77
- 0000916453
- (2000) Int. J. Quantum Chem. , vol.76 , pp. 677
- Kurita, N.¹ Araki, M.² Nakao, K.³ Kobayashi, K.⁴

78
- 0035134013
- (2001) J. Phys. Chem. , vol.165 , pp. 646
- William, H.L.¹ Chabalowski, C.F.²

79
- 0038398783
- (1999) J. Chem. Phys. , vol.110 , pp. 1916
- Perez-Jorda, J.A.¹ San-Fabian, E.² Perez-Jimenez, A.J.³

80
- 0034657918
- (2000) Phys. Chem. Chem. Phys. , vol.2 , pp. 2419
- Kratochvil, M.¹ Engkvist, O.² Vacek, J.³ Jungwirth, P.⁴ Hobza, P.⁵

81
- 0000596518
- (2000) J. Phys. Chem. B , vol.104 , pp. 1108
- Gervasio, F.L.¹ Procacci, P.² Cardini, G.³ Guarna, A.⁴ Giolitti, A.⁵ Schettino, V.⁶

82
- 0001440278
- (1992) J. Mol. Struct. (THEOCHEM) , vol.85 , pp. 275
- Probst, M.M.¹

83
- 33748496466
- (1996) J. Phys. Chem. , vol.100 , pp. 3488
- Markham, G.D.¹ Glusker, J.P.² Bock, C.L.³ Trachhtman, M.⁴ Bock, C.V.⁵

84
- 0001170423
- (1996) J. Comput. Chem. , vol.17 , pp. 1481
- Gresh, N.¹ Garmer, D.R.²

85
- 0000245686
- (1999) J. Phys. Chem. A , vol.103 , pp. 11406
- Sponer, J.¹ Sponer, J.E.² Gorb, L.³ Leszczynski, J.⁴ Lippert, B.⁵

86
- 4243364719
- in press
- (2001) Inorg. Chem. , vol.40
- Sponer, J.E.¹ Glahe, F.² Leszczynski, J.³ Lippert, B.⁴ Sponer, J.⁵

87
- 0033913014
- (2000) J. Biomol. Struct. Dyn. , vol.17 , pp. 1087
- Sponer, J.¹ Sponer, J.E.² Leszczynski, J.³

88
- 33748614588
- (1996) J. Phys. Chem. , vol.100 , pp. 7250
- Burda, J.V.¹ Sponer, J.² Hobza, P.³

89
- 0031274672
- (1997) J. Phys. Chem. B , vol.101 , pp. 9670
- Burda, J.V.¹ Sponer, J.² Leszczynski, J.³ Hobza, P.⁴

90
- 0345631645
- (1998) J. Phys. Chem. A , vol.102 , pp. 5951
- Sponer, J.¹ Burda, J.V.² Sabat, M.³ Leszczynski, J.⁴ Hobza, P.⁵

91
- 0031593720
- (1998) J. Biomol. Struct. Dyn. , vol.16 , pp. 139
- Sponer, J.¹ Sabat, M.² Burda, J.V.³ Leszczynski, J.⁴ Hobza, P.⁵

92
- 0032862536
- (1999) J. Biomol. Struct. Dyn. , vol.17 , pp. 61
- Sponer, J.¹ Burda, J.V.² Leszczynski, J.³ Hobza, P.⁴

93
- 0033533971
- (1999) Chem. Commun. , pp. 2167
- Sigel, R.K.O.¹ Lippert, B.²

94
- 0034126663
- (2000) J. Biol. Inorganic Chem. , vol.5 , pp. 287
- Sigel, R.K.O.¹ Freisinger, E.² Lippert, B.³

95
- 0030923516
- (1997) Proc. Natl. Acad. Sci. USA , vol.94 , pp. 10565
- Han, W.H.¹ Dlakic, M.² Zhu, Y.W.J.³ Lyndsay, S.M.⁴ Harrington, R.E.⁵

96
- 0040164390
- (1999) J. Am. Chem. Soc. , vol.121 , pp. 5519
- Spackova, N.¹ Berger, I.² Sponer, J.³

97
- 0035134733
- (2001) Biophys. J. , vol.80 , pp. 455
- Stefl, R.¹ Spackova, N.² Berger, I.³ Sponer, J.⁴

98
- 0034836422
- (2001) J. Am. Chem. Soc. , vol.123 , pp. 3295
- Spackova, N.¹ Berger, I.² Sponer, J.³

99
- 0034018494
- (2000) J. Biol. Inorganic Chem. , vol.5 , pp. 178
- Burda, J.V.¹ Sponer, J.² Leszczynski, J.³

100
- 33748480136
- and references therein
- (1997) J. Chem. Soc. Dalt. Tr. , pp. 3971
- Lippert, B.¹

101
- 0030047369
- (1996) J. Am. Chem. Soc. , vol.118 , pp. 3010
- Florián, J.¹ Leszczynski, J.²

102
- 0032547253
- (1998) J. Am. Chem. Soc. , vol.120 , pp. 8159
- Bertran, J.¹ Oliva, A.² Rodriguez-Santiago, L.³ Sodupe, M.⁴

103
- 0001394051
- (1999) J. Phys. Chem. A , vol.103 , pp. 8853
- Chandra, A.K.¹ Nguyen, M.T.² Uchimaru, T.³ Zeegers-Huyskens, T.⁴

104
- 0001604675
- (2000) Chem. Phys. Phys. Chem. , vol.2 , pp. 869
- Kawahara, S.¹ Uchimaru, T.²

105
- 0000633071
- (1999) J. Phys. Chem. A , vol.103 , pp. 11052
- Plokhotnichenko, A.M.¹ Radchenko, E.D.² Stepanian, S.G.³ Adamowicz, L.⁴

106
- 0031454473
- (1997) J. Biomol. Struct. Dyn. , vol.15 , pp. 619
- Meyer, M.¹ Suhnel, J.²

107
- 0033599543
- (1999) J. Am. Chem. Soc. , vol.121 , pp. 2605
- Brandl, M.¹ Meyer, M.² Suhnel, J.³

108
- 0000147152
- (1999) Int. J. Quantum Chem. , vol.74 , pp. 259
- Raimondi, M.¹ Famulari, A.² Gaininetti, E.³

109
- 0000974033
- (1999) J. Phys. Chem. A , vol.103 , pp. 8516
- Kawahara, S.¹ Wada, T.² Kawauchi, S.³ Uchimaru, T.⁴ Sekine, M.⁵

110
- 0033434379
- (1999) Theoret. Chem. Acc. , vol.101 , pp. 143
- Alagona, G.¹ Ghio, C.² Giolitti, A.³ Monti, S.⁴

111
- 0031237881
- (1997) J. Phys. Chem. A , vol.101 , pp. 7208
- McCarthy, W.¹ Plokhotnichenko, A.M.² Radchenko, E.D.³ Smets, J.⁴ Smith, D.M.A.⁵ Stepanian, S.G.⁶ Adamowicz, L.⁷

112
- 0034600253
- (2000) J. Am. Chem. Soc. , vol.122 , pp. 4117
- Guerra, C.F.¹ Bickelhaupt, F.M.² Snijders, J.G.³ Bearends, E.J.⁴

113
- 0001572167
- (2000) J. Phys. Chem. , vol.104 , pp. 815
- Bondarev, D.A.¹ Skawinski, W.J.² Venanzi, C.A.³

114
- 0031693340
- (1998) Methods (Methods in Enzymol.) , vol.14 , pp. 277
- Gago, F.¹

115
- 0029011803
- (1995) Int. J. Radiat. Biol. , vol.67 , pp. 627
- Colson, A.-O.¹ Sevilla, M.D.²

116
- 0034227603
- (2000) J. Phys. Chem. A , vol.104 , pp. 6308
- Gu, J.D.¹ Leszczynski, J.²

117
- 0345893810
- (2001) J. Comp. Chem. , vol.22 , pp. 109
- Meyer, M.¹ Steinke, T.² Brandl, M.³ Suhnel, J.⁴

118
- 0034186483
- (2000) Comput. Chem. , vol.24 , pp. 341
- Famulari, A.¹ Moroni, F.² Sironi, M.³ Raimondi, M.⁴

119
- 0032804830
- (1999) Chem. Eur. J. , vol.5 , pp. 3581
- Guerra, C.F.¹ Bickelhaupt, F.M.² Snijders, J.G.³ Baerends, E.J.⁴

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