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Annual Review of Physical Chemistry

Volumn 51, Issue , 2000, Pages 435-471

Molecular dynamics simulation of nucleic acids

(2) Cheatham III, Thomas E a Kollman, Peter A b

a UNIVERSITY OF UTAH (United States)

b UNIVERSITY OF CALIFORNIA (United States)

Author keywords

A B transition; Free energies; Hydration; Ion association; Sequence specific structure

Indexed keywords

NUCLEIC ACID;

CHEMISTRY; CONFORMATION; NUCLEOTIDE SEQUENCE; REVIEW;

BASE SEQUENCE; NUCLEIC ACID CONFORMATION; NUCLEIC ACIDS;

EID: 0033654654 PISSN: 0066426X EISSN: None Source Type: Book Series
DOI: 10.1146/annurev.physchem.51.1.435 Document Type: Article

Times cited : (318)

References (200)

1
- 85052507481
- Oxford, UK: Oxford Univ. Press. 385 pp
- Allen MP, Tildesley DJ. 1987. Computer Simulation of Liquids. Oxford, UK: Oxford Univ. Press. 385 pp.
- (1987) Computer Simulation of Liquids
- Allen, M.P.¹ Tildesley, D.J.²

2
- 0003653899
- Reading, MA: Addison-Wesley. 616 pp
- Leach AR. 1997. Molecular Modeling: Principles and Applications. Reading, MA: Addison-Wesley. 616 pp.
- (1997) Molecular Modeling: Principles and Applications
- Leach, A.R.¹

3
- 0002593973
- ed. E Westhof, New York/London: Macmillan
- Beveridge DL, Swaminathan S, Ravishanker G, Withka JM, Srinivasan J, et al. 1993. In Water and Biological Molecules, ed. E Westhof, pp. 165-225. New York/London: Macmillan
- (1993) Water and Biological Molecules , pp. 165-225
- Beveridge, D.L.¹ Swaminathan, S.² Ravishanker, G.³ Withka, J.M.⁴ Srinivasan, J.⁵

4
- 0028222740
- Beveridge DL, Ravishanker G. 1994. Curr. Opin. Struct. Biol. 4:246-55
- (1994) Curr. Opin. Struct. Biol. , vol.4 , pp. 246-255
- Beveridge, D.L.¹ Ravishanker, G.²

5
- 0001099187
- ed. S Neidle, Oxford, UK: Oxford Univ. Press
- Miller JL, Cheatham TE III, Kollman PA. 1999. In Oxford Handbook of Nucleic Acid Structure, ed. S Neidle, pp. 95-115. Oxford, UK: Oxford Univ. Press
- (1999) Oxford Handbook of Nucleic Acid Structure , pp. 95-115
- Miller, J.L.¹ Cheatham T.E. III² Kollman, P.A.³

6
- 0029170114
- Cheatham TE III, Miller JL, Fox T, Darden TA, Kollman PA. 1995. J. Am. Chem. Soc. 117:4193-94
- (1995) J. Am. Chem. Soc. , vol.117 , pp. 4193-4194
- Cheatham T.E. III¹ Miller, J.L.² Fox, T.³ Darden, T.A.⁴ Kollman, P.A.⁵

7
- 84977266737
- Ewald P. 1921. Ann. Phys. (Leipzig) 64:253-64
- (1921) Ann. Phys. (Leipzig) , vol.64 , pp. 253-264
- Ewald, P.¹

8
- 0000246675
- Forester TR, McDonald IR. 1991. Mol. Phys. 72:643-60
- (1991) Mol. Phys. , vol.72 , pp. 643-660
- Forester, T.R.¹ McDonald, I.R.²

9
- 4243187449
- New York: NY Acad. Sci
- van Gunsteren WF, Berendsen HJC, Geurtsen RG, Zwinderman HRJ. 1986. In Computer Simulation of Chemical and Biomolecular Systems, pp. 287-303. New York: NY Acad. Sci.
- (1986) Computer Simulation of Chemical and Biomolecular Systems , pp. 287-303
- Gunsteren, W.F.¹ Berendsen, H.J.C.² Geurtsen, R.G.³ Zwinderman, H.R.J.⁴

10
- 0000930430
- Swaminathan S, Ravishanker G, Beveridge DL. 1991. J. Am. Chem. Soc. 113:5027-40
- (1991) J. Am. Chem. Soc. , vol.113 , pp. 5027-5040
- Swaminathan, S.¹ Ravishanker, G.² Beveridge, D.L.³

11
- 0033062850
- Konerding DE, Cheatham TE III, Kollman PA, James TL. 1999. J. Biomol. NMR 13:119-31
- (1999) J. Biomol. NMR , vol.13 , pp. 119-131
- Konerding, D.E.¹ Cheatham T.E. III² Kollman, P.A.³ James, T.L.⁴

12
- 0031823992
- Strahan GD, Keniry MA, Shafer RH. 1998. Biophys. J. 75:968-81
- (1998) Biophys. J. , vol.75 , pp. 968-981
- Strahan, G.D.¹ Keniry, M.A.² Shafer, R.H.³

13
- 0033567297
- Bostock-Smith CE, Laughton CA, Searle MS. 1999. Biochem. J. 342:125-32
- (1999) Biochem. J. , vol.342 , pp. 125-132
- Bostock-Smith, C.E.¹ Laughton, C.A.² Searle, M.S.³

14
- 0029011701
- Cornell WD, Cieplak P, Bayly CI, Gould IR, Merz KM, et al. 1995. J. Am. Chem. Soc. 117:5179-97
- (1995) J. Am. Chem. Soc. , vol.117 , pp. 5179-5197
- Cornell, W.D.¹ Cieplak, P.² Bayly, C.I.³ Gould, I.R.⁴ Merz, K.M.⁵

15
- 6344260593
- MacKerell AD, Wiorkiewicz-Kuczera J, Karplus M. 1995. J. Am. Chem. Soc. 117:11946-75
- (1995) J. Am. Chem. Soc. , vol.117 , pp. 11946-11975
- MacKerell, A.D.¹ Wiorkiewicz-Kuczera, J.² Karplus, M.³

16
- 0348244547
- Foloppe N, MacKerell ADJ. 2000. J. Comput. Chem. 21:86-104
- (2000) J. Comput. Chem. , vol.21 , pp. 86-104
- Foloppe, N.¹ MacKerell, A.D.J.²

17
- 0000214231
- MacKerell ADJ, Banavali N. 2000. J. Comput. Chem. 21:105-20
- (2000) J. Comput. Chem. , vol.21 , pp. 105-120
- Mackerell, A.D.J.¹ Banavali, N.²

18
- 0032459726
- Langley DR. 1998. J. Biomol. Struct. Dyn. 16:487-509
- (1998) J. Biomol. Struct. Dyn. , vol.16 , pp. 487-509
- Langley, D.R.¹

19
- 0029633186
- Pearlman DA, Case DA, Caldwell JW, Ross WS, Cheatham TE, et al. 1995. Comput. Phys. Commun. 91:1-41
- (1995) Comput. Phys. Commun. , vol.91 , pp. 1-41
- Pearlman, D.A.¹ Case, D.A.² Caldwell, J.W.³ Ross, W.S.⁴ Cheatham, T.E.⁵

20
- 0031334264
- Crowley MF, Darden TA, Cheatham TE III, Deerfield DW. 1997. J. Supercomput. 11:255-78
- (1997) J. Supercomput. , vol.11 , pp. 255-278
- Crowley, M.F.¹ Darden, T.A.² Cheatham T.E. III³ Deerfield, D.W.⁴

21
- 0030172529
- Pollock EL, Glosli J. 1996. Comput. Phys. Commun. 95:93-110
- (1996) Comput. Phys. Commun. , vol.95 , pp. 93-110
- Pollock, E.L.¹ Glosli, J.²

22
- 0003569545
- Bristol, UK: Inst. Phys./Adam Hilger. 540 pp.
- Hockney RW, Eastwood JW. 1988. Computer Simulation Using Particles. Bristol, UK: Inst. Phys./Adam Hilger. 540 pp.
- (1988) Computer Simulation Using Particles
- Hockney, R.W.¹ Eastwood, J.W.²

23
- 0000642278
- Luty BA, Tironi IG, van Gunsteren WF. 1995. J. Chem. Phys. 103:3014-21
- (1995) J. Chem. Phys. , vol.103 , pp. 3014-3021
- Luty, B.A.¹ Tironi, I.G.² Van Gunsteren, W.F.³

24
- 33846823909
- Darden TA, York DM, Pedersen LG. 1993. J. Chem. Phys. 98:10089-92
- (1993) J. Chem. Phys. , vol.98 , pp. 10089-10092
- Darden, T.A.¹ York, D.M.² Pedersen, L.G.³

25
- 33645961739
- Essmann U, Perera L, Berkowitz ML, Darden T, Lee H, Pedersen LG. 1995. J. Chem. Phys. 103:8577-93
- (1995) J. Chem. Phys. , vol.103 , pp. 8577-8593
- Essmann, U.¹ Perera, L.² Berkowitz, M.L.³ Darden, T.⁴ Lee, H.⁵ Pedersen, L.G.⁶

26
- 0000577932
- Petersen HG. 1995. J. Chem. Phys. 103:3668-79
- (1995) J. Chem. Phys. , vol.103 , pp. 3668-3679
- Petersen, H.G.¹

27
- 33744994616
- York D, Yang WT. 1994. J. Chem. Phys. 101:3298-300
- (1994) J. Chem. Phys. , vol.101 , pp. 3298-3300
- York, D.¹ Yang, W.T.²

28
- 0033024177
- Sagui C, Darden TA. 1999. Annu. Rev. Biophys. Biomol. Struct. 28:155-79
- (1999) Annu. Rev. Biophys. Biomol. Struct. , vol.28 , pp. 155-179
- Sagui, C.¹ Darden, T.A.²

29
- 0030782840
- MacKerell AD Jr. 1997. J. Phys. Chem. B 101:646-50
- (1997) J. Phys. Chem. B , vol.101 , pp. 646-650
- Mackerell A.D., Jr.¹

30
- 0042932055
- ed. NB Leontis, JJ Santa Lucia, Washington, DC: Am. Chem. Soc
- MacKerell AD Jr. 1998. In Modeling and Structure Determination of Nucleic Acids, ed. NB Leontis, JJ Santa Lucia, pp. 304-11. Washington, DC: Am. Chem. Soc.
- (1998) Modeling and Structure Determination of Nucleic Acids , pp. 304-311
- Mackerell A.D., Jr.¹

31
- 0029633167
- Levitt M, Hirshberg M, Sharon R, Daggett V. 1995. Comput. Phys. Commun. 91:215-31
- (1995) Comput. Phys. Commun. , vol.91 , pp. 215-231
- Levitt, M.¹ Hirshberg, M.² Sharon, R.³ Daggett, V.⁴

32
- 84986534166
- Steinbach PJ, Brooks BR. 1994. J. Comput. Chem. 15:667-83
- (1994) J. Comput. Chem. , vol.15 , pp. 667-683
- Steinbach, P.J.¹ Brooks, B.R.²

33
- 0000951252
- Feller SE, Pastor RW, Rojnuckarin A, Bogusz S, Brooks BR. 1996. J. Phys. Chem. 100:17011-20
- (1996) J. Phys. Chem. , vol.100 , pp. 17011-17020
- Feller, S.E.¹ Pastor, R.W.² Rojnuckarin, A.³ Bogusz, S.⁴ Brooks, B.R.⁵

34
- 0037627173
- Hunenberger PH, McCammon JA. 1999. Biophys. J. 78:69-88
- (1999) Biophys. J. , vol.78 , pp. 69-88
- Hunenberger, P.H.¹ McCammon, J.A.²

35
- 0038683517
- Hunenberger PH, McCammon JA. 1999. J. Chem. Phys. 110:1856-72
- (1999) J. Chem. Phys. , vol.110 , pp. 1856-1872
- Hunenberger, P.H.¹ McCammon, J.A.²

36
- 0344778061
- Still WC, Tempczyk A, Hawley RC, Hendrickson T. 1990. J. Am. Chem. Soc. 112:6127-28
- (1990) J. Am. Chem. Soc. , vol.112 , pp. 6127-6128
- Still, W.C.¹ Tempczyk, A.² Hawley, R.C.³ Hendrickson, T.⁴

37
- 0002636134
- Hawkins GD, Cramer CJ, Truhlar DG. 1995. Chem. Phys. Lett. 246:122-29
- (1995) Chem. Phys. Lett. , vol.246 , pp. 122-129
- Hawkins, G.D.¹ Cramer, C.J.² Truhlar, D.G.³

38
- 0033654297
- Bashford D, Case DA. 2000. Annu. Rev. Phys. Chem. 51:129-52
- (2000) Annu. Rev. Phys. Chem. , vol.51 , pp. 129-152
- Bashford, D.¹ Case, D.A.²

39
- 0033064123
- Williams DJ, Hall KB. 1999. Biophys. J. 76:3192-205
- (1999) Biophys. J. , vol.76 , pp. 3192-3205
- Williams, D.J.¹ Hall, K.B.²

40
- 0034701222
- Tsui V, Case DA. 2000. J. Am. Chem. Soc. 122:2489-98
- (2000) J. Am. Chem. Soc. , vol.122 , pp. 2489-2498
- Tsui, V.¹ Case, D.A.²

41
- 0024821263
- Allinger NL, Yuh YH, Lii JH. 1989. J. Am. Chem. Soc. 111:8551-66
- (1989) J. Am. Chem. Soc. , vol.111 , pp. 8551-8566
- Allinger, N.L.¹ Yuh, Y.H.² Lii, J.H.³

42
- 0001345932
- Hwang MJ, Stockfisch TP, Hagler AT. 1994. J. Am. Chem. Soc. 116:2515-25
- (1994) J. Am. Chem. Soc. , vol.116 , pp. 2515-2525
- Hwang, M.J.¹ Stockfisch, T.P.² Hagler, A.T.³

43
- 84986512474
- Brooks BR, Bruccoleri RE, Olafson BD, States DJ, Swaminathan S, Karplus M. 1983. J. Comput. Chem. 4:187-217
- (1983) J. Comput. Chem. , vol.4 , pp. 187-217
- Brooks, B.R.¹ Bruccoleri, R.E.² Olafson, B.D.³ States, D.J.⁴ Swaminathan, S.⁵ Karplus, M.⁶

44
- 3042524904
- Bayly CI, Cieplak P, Cornell WD, Kollman PA. 1993. J. Phys. Chem. 97:10269-80
- (1993) J. Phys. Chem. , vol.97 , pp. 10269-10280
- Bayly, C.I.¹ Cieplak, P.² Cornell, W.D.³ Kollman, P.A.⁴

45
- 0004016501
- Jorgensen WL, Chandrasekhar J, Madura JD, Impey RW, Klein ML. 1983. J. Chem. Phys. 79:926-35
- (1983) J. Chem. Phys. , vol.79 , pp. 926-935
- Jorgensen, W.L.¹ Chandrasekhar, J.² Madura, J.D.³ Impey, R.W.⁴ Klein, M.L.⁵

46
- 1242346370
- Berendsen HJC, Grigera JR, Straatsma TP. 1987. J. Phys. Chem. 91:6269-74
- (1987) J. Phys. Chem. , vol.91 , pp. 6269-6274
- Berendsen, H.J.C.¹ Grigera, J.R.² Straatsma, T.P.³

47
- 0031749571
- Shields GC, Laughton CA, Orozco M. 1998. J. Am. Chem. Soc. 120:5895-904
- (1998) J. Am. Chem. Soc. , vol.120 , pp. 5895-5904
- Shields, G.C.¹ Laughton, C.A.² Orozco, M.³

48
- 0343213055
- Hobza P, Kabelac M, Sponer J, Mejzlik P, Vondrasek J. 1997. J. Comput. Chem. 18:1136-150
- (1997) J. Comput. Chem. , vol.18 , pp. 1136-1150
- Hobza, P.¹ Kabelac, M.² Sponer, J.³ Mejzlik, P.⁴ Vondrasek, J.⁵

49
- 0029912748
- Jorgensen WL, Maxwell DS, Tirado-Rives J. 1996. J. Am. Chem. Soc. 118:11225-36
- (1996) J. Am. Chem. Soc. , vol.118 , pp. 11225-11236
- Jorgensen, W.L.¹ Maxwell, D.S.² Tirado-Rives, J.³

50
- 0033032014
- Foloppe N, MacKerell ADJ. 1999. Biophys. J. 76:3206-18
- (1999) Biophys. J. , vol.76 , pp. 3206-3218
- Foloppe, N.¹ MacKerell, A.D.J.²

51
- 0032922174
- Cheatham TE III, Cieplak P, Kollman PA. 1999. J. Biomol. Struct. Dyn. 16:845-62
- (1999) J. Biomol. Struct. Dyn. , vol.16 , pp. 845-862
- Cheatham T.E. III¹ Cieplak, P.² Kollman, P.A.³

52
- 0029110156
- York DM, Yang WT, Lee H, Darden TA, Pedersen LG. 1995. J. Am. Chem. Soc. 117:5001-2
- (1995) J. Am. Chem. Soc. , vol.117 , pp. 5001-5002
- York, D.M.¹ Yang, W.T.² Lee, H.³ Darden, T.A.⁴ Pedersen, L.G.⁵

53
- 0001628106
- Lee H, Darden TA, Pedersen LG. 1995. J. Chem. Phys. 102:3830-34
- (1995) J. Chem. Phys. , vol.102 , pp. 3830-3834
- Lee, H.¹ Darden, T.A.² Pedersen, L.G.³

54
- 4243785712
- Lee H, Darden TA, Pedersen LG. 1995. Chem. Phys. Lett. 243:229-35
- (1995) Chem. Phys. Lett. , vol.243 , pp. 229-235
- Lee, H.¹ Darden, T.A.² Pedersen, L.G.³

55
- 0001383308
- Steinbach PJ, Brooks BR. 1994. Chem. Phys. Lett. 226:447-52
- (1994) Chem. Phys. Lett. , vol.226 , pp. 447-452
- Steinbach, P.J.¹ Brooks, B.R.²

56
- 0026059567
- Prive GG, Yanagi K, Dickerson RE. 1991. J. Mol. Biol. 217:177-99
- (1991) J. Mol. Biol. , vol.217 , pp. 177-199
- Prive, G.G.¹ Yanagi, K.² Dickerson, R.E.³

57
- 0034036155
- Bevan DR, Li L, Pedersen LG, Darden TA. 2000. Biophys. J. 78:668-82
- (2000) Biophys. J. , vol.78 , pp. 668-682
- Bevan, D.R.¹ Li, L.² Pedersen, L.G.³ Darden, T.A.⁴

58
- 0003458038
- Berlin/New York: Springer-Verlag. 556 pp.
- Saenger W. 1984. Principles of Nucleic Acid Structure. Berlin/New York: Springer-Verlag. 556 pp.
- (1984) Principles of Nucleic Acid Structure
- Saenger, W.¹

59
- 0028807713
- Piskur J, Rupprecht A. 1995. FEBS Lett. 375:174-78
- (1995) FEBS Lett. , vol.375 , pp. 174-178
- Piskur, J.¹ Rupprecht, A.²

60
- 0003588949
- New York/London: Oxford Univ. Press
- Hecht S. 1996. Bioorganic Chemistry: Nucleic Acids. New York/London: Oxford Univ. Press
- (1996) Bioorganic Chemistry: Nucleic Acids
- Hecht, S.¹

61
- 0023459625
- Dickerson RE, Goodsell DS, Kopka ML, Pjura PE. 1987. J. Biomol. Struct. Dyn. 5:557-79
- (1987) J. Biomol. Struct. Dyn. , vol.5 , pp. 557-579
- Dickerson, R.E.¹ Goodsell, D.S.² Kopka, M.L.³ Pjura, P.E.⁴

62
- 0024312492
- Jain S, Sundaralingam M. 1989. J. Biol. Chem. 264:12780-84
- (1989) J. Biol. Chem. , vol.264 , pp. 12780-12784
- Jain, S.¹ Sundaralingam, M.²

63
- 0024462296
- Shakked Z, Guerstein-Guzikevich G, Eisenstein M, Frolow F, Rabinovich D. 1989. Nature 342:456-60
- (1989) Nature , vol.342 , pp. 456-460
- Shakked, Z.¹ Guerstein-Guzikevich, G.² Eisenstein, M.³ Frolow, F.⁴ Rabinovich, D.⁵

64
- 0026801023
- Bingman CA, Zon G, Sundaralingam M. 1992. J. Mol. Biol. 227:738-56
- (1992) J. Mol. Biol. , vol.227 , pp. 738-756
- Bingman, C.A.¹ Zon, G.² Sundaralingam, M.³

65
- 0029109915
- Zichi DA. 1995. J. Am. Chem. Soc. 117:2957-69
- (1995) J. Am. Chem. Soc. , vol.117 , pp. 2957-2969
- Zichi, D.A.¹

66
- 0029139897
- Weerasinghe S, Smith PE, Mohan V, Cheng YK, Pettitt BM. 1995. J. Am. Chem. Soc. 117:2147-58
- (1995) J. Am. Chem. Soc. , vol.117 , pp. 2147-2158
- Weerasinghe, S.¹ Smith, P.E.² Mohan, V.³ Cheng, Y.K.⁴ Pettitt, B.M.⁵

67
- 0029591501
- Weerasinghe S, Smith PE, Pettitt BM. 1995. Biochemistry 34:16269-78
- (1995) Biochemistry , vol.34 , pp. 16269-16278
- Weerasinghe, S.¹ Smith, P.E.² Pettitt, B.M.³

68
- 0029148986
- Yang LQ, Weerasinghe S, Smith PE, Pettitt BM. 1995. Biophys. J. 69:1519-27
- (1995) Biophys. J. , vol.69 , pp. 1519-1527
- Yang, L.Q.¹ Weerasinghe, S.² Smith, P.E.³ Pettitt, B.M.⁴

69
- 0031047279
- Young MA, Jayaram B, Beveridge DL. 1997. J. Am. Chem. Soc. 119:59-69
- (1997) J. Am. Chem. Soc. , vol.119 , pp. 59-69
- Young, M.A.¹ Jayaram, B.² Beveridge, D.L.³

70
- 0030862276
- Young MA, Ravishanker G, Beveridge DL. 1997. Biophys. J. 73:2313-36
- (1997) Biophys. J. , vol.73 , pp. 2313-2336
- Young, M.A.¹ Ravishanker, G.² Beveridge, D.L.³

71
- 0025762608
- Lane A, Jenkins TC, Brown T, Neidle S. 1991. Biochemistry 30:1372-85
- (1991) Biochemistry , vol.30 , pp. 1372-1385
- Lane, A.¹ Jenkins, T.C.² Brown, T.³ Neidle, S.⁴

72
- 0029941154
- Cheatham TE III, Kollman PA. 1996. J. Mol. Biol. 259:434-44
- (1996) J. Mol. Biol. , vol.259 , pp. 434-444
- Cheatham T.E. III¹ Kollman, P.A.²

73
- 0028863271
- Ulyanov NB, James TL. 1995. Methods Enzymol. 261:90-120
- (1995) Methods Enzymol. , vol.261 , pp. 90-120
- Ulyanov, N.B.¹ James, T.L.²

74
- 0030953141
- Cheatham TE III, Kollman PA. 1997. J. Am. Chem. Soc. 119:4805-25
- (1997) J. Am. Chem. Soc. , vol.119 , pp. 4805-4825
- Cheatham T.E. III¹ Kollman, P.A.²

75
- 0027648031
- Ramakrishnan B, Sundaralingam M. 1993. J. Biomol. Struct. Dyn. 11:11-26
- (1993) J. Biomol. Struct. Dyn. , vol.11 , pp. 11-26
- Ramakrishnan, B.¹ Sundaralingam, M.²

76
- 0026742978
- Berman HM, Olson WK, Beveridge DL, Westbrook J, Gelbin A, et al. 1992. Biophys. J. 63:751-59
- (1992) Biophys. J. , vol.63 , pp. 751-759
- Berman, H.M.¹ Olson, W.K.² Beveridge, D.L.³ Westbrook, J.⁴ Gelbin, A.⁵

77
- 84986505827
- Momany FA, Rone R. 1992. J. Comp. Chem. 7:888-900
- (1992) J. Comp. Chem. , vol.7 , pp. 888-900
- Momany, F.A.¹ Rone, R.²

78
- 0025800219
- Zhurkin VB, Ulyanov NB, Gorin AA, Jemigan RL. 1991. Proc. Natl. Acad. Sci. USA 88:7046-50
- (1991) Proc. Natl. Acad. Sci. USA , vol.88 , pp. 7046-7050
- Zhurkin, V.B.¹ Ulyanov, N.B.² Gorin, A.A.³ Jemigan, R.L.⁴

79
- 0026699291
- Poncin M, Hartmann B, Lavery R. 1992. J. Mol. Biol. 226:775-94
- (1992) J. Mol. Biol. , vol.226 , pp. 775-794
- Poncin, M.¹ Hartmann, B.² Lavery, R.³

80
- 36749121933
- Barkley MD, Zimm BH. 1979. J. Chem. Phys. 70:2991-3007
- (1979) J. Chem. Phys. , vol.70 , pp. 2991-3007
- Barkley, M.D.¹ Zimm, B.H.²

81
- 0026580159
- Selvin PR, Cook DN, Pon NG, Bauer WR, Klein MP, Hearst JP. 1992. Science 255:82-85
- (1992) Science , vol.255 , pp. 82-85
- Selvin, P.R.¹ Cook, D.N.² Pon, N.G.³ Bauer, W.R.⁴ Klein, M.P.⁵ Hearst, J.P.⁶

82
- 0028931709
- Gorin AA, Zhurkin VB, Olson WK. 1995. J. Mol. Biol. 247:34-48
- (1995) J. Mol. Biol. , vol.247 , pp. 34-48
- Gorin, A.A.¹ Zhurkin, V.B.² Olson, W.K.³

83
- 84987068914
- Teleman O, Wallqvist A. 1990. Int. J. Quant. Chem. 24:245-49
- (1990) Int. J. Quant. Chem. , vol.24 , pp. 245-249
- Teleman, O.¹ Wallqvist, A.²

84
- 0033596294
- Brauns EB, Madaras ML, Coleman RS, Murphy CJ, Berg MA. 1999. J. Am. Chem. Soc. 121:11644-49
- (1999) J. Am. Chem. Soc. , vol.121 , pp. 11644-11649
- Brauns, E.B.¹ Madaras, M.L.² Coleman, R.S.³ Murphy, C.J.⁴ Berg, M.A.⁵

85
- 0032475912
- Bonvin AMJJ, Sunnerhagen M, Otting G, van Gunsteren WF. 1998. J. Mol. Biol. 282:859-73
- (1998) J. Mol. Biol. , vol.282 , pp. 859-873
- Bonvin, A.M.J.J.¹ Sunnerhagen, M.² Otting, G.³ Van Gunsteren, W.F.⁴

86
- 0032735433
- Bruant N, Flatters D, Lavery R, Genest D. 1999. Biophys. J. 77:2366-76
- (1999) Biophys. J. , vol.77 , pp. 2366-2376
- Bruant, N.¹ Flatters, D.² Lavery, R.³ Genest, D.⁴

87
- 0030958316
- Flatters D, Young M, Beveridge DL, Lavery R. 1997. J. Biomol. Struct. Dyn. 14:757-65
- (1997) J. Biomol. Struct. Dyn. , vol.14 , pp. 757-765
- Flatters, D.¹ Young, M.² Beveridge, D.L.³ Lavery, R.⁴

88
- 0031788539
- Cheatham TE III, Srinivasan J, Case DA, Kollman PA. 1998. J. Biomol. Struct. Dyn. 16:265-80
- (1998) J. Biomol. Struct. Dyn. , vol.16 , pp. 265-280
- Cheatham T.E. III¹ Srinivasan, J.² Case, D.A.³ Kollman, P.A.⁴

89
- 0030829239
- Miller JL, Kollman PA. 1997. Biophys. J. 73:2702-10
- (1997) Biophys. J. , vol.73 , pp. 2702-2710
- Miller, J.L.¹ Kollman, P.A.²

90
- 0027203930
- James JK, Tinoco JI. 1993. Nucleic Acids Res. 21:3287-93
- (1993) Nucleic Acids Res. , vol.21 , pp. 3287-3293
- James, J.K.¹ Tinoco, J.I.²

91
- 0030873459
- Shields GC, Laughton CA, Orozco M. 1997. J. Am. Chem. Soc. 119:7463-69
- (1997) J. Am. Chem. Soc. , vol.119 , pp. 7463-7469
- Shields, G.C.¹ Laughton, C.A.² Orozco, M.³

92
- 0002042326
- ed. M Sarma, R Sarma, Schenectady, NY: Adenine
- Cheatham TE III, Kollman PA. 1998. In Structure, Motion, Interactions, and Expression of Biological Macromolecules, ed. M Sarma, R Sarma, pp. 99-116. Schenectady, NY: Adenine
- (1998) Structure, Motion, Interactions, and Expression of Biological Macromolecules , pp. 99-116
- Cheatham T.E. III¹ Kollman, P.A.²

93
- 0032871162
- Soliva R, Luque FJ, Alhambra C, Orozco M. 1999. J. Biomol. Struct. Dyn. 17:89-99
- (1999) J. Biomol. Struct. Dyn. , vol.17 , pp. 89-99
- Soliva, R.¹ Luque, F.J.² Alhambra, C.³ Orozco, M.⁴

94
- 33748674257
- Yang LQ, Pettitt BM. 1996. J. Phys. Chem. 100:2564-66
- (1996) J. Phys. Chem. , vol.100 , pp. 2564-2566
- Yang, L.Q.¹ Pettitt, B.M.²

95
- 0000367525
- Norberg J, Nilsson L. 1996. J. Chem. Phys. 104:6052-57
- (1996) J. Chem. Phys. , vol.104 , pp. 6052-6057
- Norberg, J.¹ Nilsson, L.²

96
- 0030852865
- Pastor N, Pardo L, Weinstein H. 1997. Biophys. J. 73:640-52
- (1997) Biophys. J. , vol.73 , pp. 640-652
- Pastor, N.¹ Pardo, L.² Weinstein, H.³

97
- 0030759587
- Cieplak P, Cheatham TE III, Kollman PA. 1997. J. Am. Chem. Soc. 119:6722-30
- (1997) J. Am. Chem. Soc. , vol.119 , pp. 6722-6730
- Cieplak, P.¹ Cheatham T.E. III² Kollman, P.A.³

98
- 0019912345
- Olson WK, Sussman JL. 1982. J. Am. Chem. Soc. 104:270-78
- (1982) J. Am. Chem. Soc. , vol.104 , pp. 270-278
- Olson, W.K.¹ Sussman, J.L.²

99
- 0023356067
- Bokma JT, Johnson WCJ, Blok J. 1987. Biopolymers 26:893-909
- (1987) Biopolymers , vol.26 , pp. 893-909
- Bokma, J.T.¹ Johnson, W.C.J.² Blok, J.³

100
- 0021460401
- Zehfus MH, Johnson WCJ. 1984. Biopolymers 23:1269-81
- (1984) Biopolymers , vol.23 , pp. 1269-1281
- Zehfus, M.H.¹ Johnson, W.C.J.²

101
- 0015541536
- Ivanov VI, Minchenkova LE, Schyolkina AK, Poletayev AI. 1973. Biopolymers 12:89-110
- (1973) Biopolymers , vol.12 , pp. 89-110
- Ivanov, V.I.¹ Minchenkova, L.E.² Schyolkina, A.K.³ Poletayev, A.I.⁴

102
- 0029932653
- Robinson H, Wang AH-J. 1996. Nucleic Acids Res. 24:676-82
- (1996) Nucleic Acids Res. , vol.24 , pp. 676-682
- Robinson, H.¹ Wang, A.H.-J.²

103
- 0030954859
- Cheatham TE III, Crowley MF, Fox T, Kollman PA. 1997. Proc. Natl. Acad. Sci. USA 94:9626-30
- (1997) Proc. Natl. Acad. Sci. USA , vol.94 , pp. 9626-9630
- Cheatham T.E. III¹ Crowley, M.F.² Fox, T.³ Kollman, P.A.⁴

104
- 0000115258
- Sprous D, Young MA, Beveridge DL. 1998. J. Phys. Chem. B. 102:4658-67
- (1998) J. Phys. Chem. B. , vol.102 , pp. 4658-4667
- Sprous, D.¹ Young, M.A.² Beveridge, D.L.³

105
- 0031572854
- Cheatham TE III, Kollman PA. 1997. Structure 5:1297-311
- (1997) Structure , vol.5 , pp. 1297-1311
- Cheatham T.E. III¹ Kollman, P.A.²

106
- 0029131632
- Gao Y-G, Robinson H, van Boom JH, Wang AH-J. 1995. Biophys. J. 69:559-68
- (1995) Biophys. J. , vol.69 , pp. 559-568
- Gao, Y.-G.¹ Robinson, H.² Van Boom, J.H.³ Wang, A.H.-J.⁴

107
- 0027006826
- Braunlin WH, Xu QW. 1992. Biopolymers 32:1703-11
- (1992) Biopolymers , vol.32 , pp. 1703-1711
- Braunlin, W.H.¹ Xu, Q.W.²

108
- 0027194357
- Xu QW, Shoemaker RK, Braunlin WH. 1993. Biophys. J. 65:1039-49
- (1993) Biophys. J. , vol.65 , pp. 1039-1049
- Xu, Q.W.¹ Shoemaker, R.K.² Braunlin, W.H.³

109
- 0023990696
- Peticolas WL, Wang Y, Thomas GA. 1988. Proc. Natl. Acad. Sci. USA 85:2579-83
- (1988) Proc. Natl. Acad. Sci. USA , vol.85 , pp. 2579-2583
- Peticolas, W.L.¹ Wang, Y.² Thomas, G.A.³

110
- 0029778540
- Ivanov VI, Minchenkova LE, Burckhardt G, Birch-Hirschfeld E, Fritzsche H, Zimmer C. 1996. Biophys. J. 71:3344-49
- (1996) Biophys. J. , vol.71 , pp. 3344-3349
- Ivanov, V.I.¹ Minchenkova, L.E.² Burckhardt, G.³ Birch-Hirschfeld, E.⁴ Fritzsche, H.⁵ Zimmer, C.⁶

111
- 0031237692
- Feig M, Pettitt BM. 1997. J. Phys. Chem. 101:7361-63
- (1997) J. Phys. Chem. , vol.101 , pp. 7361-7363
- Feig, M.¹ Pettitt, B.M.²

112
- 0031808069
- Feig M, Pettitt BM. 1998. Biophys. J. 75:134-49
- (1998) Biophys. J. , vol.75 , pp. 134-149
- Feig, M.¹ Pettitt, B.M.²

113
- 0028864425
- Lane AN. 1995. Methods Enzymol. 261:413-35
- (1995) Methods Enzymol. , vol.261 , pp. 413-435
- Lane, A.N.¹

114
- 0004252614
- Langley DR. 1999. J. Biomol. Struct. Dyn. 16:1366-67
- (1999) J. Biomol. Struct. Dyn. , vol.16 , pp. 1366-1367
- Langley, D.R.¹

115
- 0022462967
- Mezei M, Beveridge DL. 1986. Methods Enzymol. 127:21-47
- (1986) Methods Enzymol. , vol.127 , pp. 21-47
- Mezei, M.¹ Beveridge, D.L.²

116
- 0031013475
- Rudnicki WR, Pettitt BM. 1996. Biopolymers 41:107-19
- (1996) Biopolymers , vol.41 , pp. 107-119
- Rudnicki, W.R.¹ Pettitt, B.M.²

117
- 0027138869
- Schneider B, Cohen DM, Schleifer L, Srinivasan AR, Olson WK, Berman HM. 1993. Biophys. J. 65:2291-303
- (1993) Biophys. J. , vol.65 , pp. 2291-2303
- Schneider, B.¹ Cohen, D.M.² Schleifer, L.³ Srinivasan, A.R.⁴ Olson, W.K.⁵ Berman, H.M.⁶

118
- 0031551574
- Duan Y, Wilkosz P, Crowley M, Rosenberg JM. 1997. J. Mol. Biol. 272:553-72
- (1997) J. Mol. Biol. , vol.272 , pp. 553-572
- Duan, Y.¹ Wilkosz, P.² Crowley, M.³ Rosenberg, J.M.⁴

119
- 0028241354
- Berman HM. 1994. Curr. Opin. Struct. Biol. 4:345-50
- (1994) Curr. Opin. Struct. Biol. , vol.4 , pp. 345-350
- Berman, H.M.¹

120
- 0033581172
- Nagan MC, Kerimo SS, Musier-Forsyth K, Cramer CJ. 1999. J. Am. Chem. Soc. 121:7310-17
- (1999) J. Am. Chem. Soc. , vol.121 , pp. 7310-7317
- Nagan, M.C.¹ Kerimo, S.S.² Musier-Forsyth, K.³ Cramer, C.J.⁴

121
- 0033199523
- Kosztin D, Gumport RI, Schulten K. 1999. Nucleic Acids Res. 27:3550-56
- (1999) Nucleic Acids Res. , vol.27 , pp. 3550-3556
- Kosztin, D.¹ Gumport, R.I.² Schulten, K.³

122
- 0023708040
- Westhof E. 1988. Annu. Rev. Biophys. Biophys. Chem. 17:125-44
- (1988) Annu. Rev. Biophys. Biophys. Chem. , vol.17 , pp. 125-144
- Westhof, E.¹

123
- 0033525668
- Feig M, Pettitt BM. 1999. J. Mol. Biol. 286:1075-95
- (1999) J. Mol. Biol. , vol.286 , pp. 1075-1095
- Feig, M.¹ Pettitt, B.M.²

124
- 0032575760
- Young MA, Beveridge DL. 1998. J. Mol. Biol. 281:675-87
- (1998) J. Mol. Biol. , vol.281 , pp. 675-687
- Young, M.A.¹ Beveridge, D.L.²

125
- 0030320856
- Auffinger P, Louise-May S, Westhof E. 1996. Faraday Discuss. Chem. Soc. 103:151-73
- (1996) Faraday Discuss. Chem. Soc. , vol.103 , pp. 151-173
- Auffinger, P.¹ Louise-May, S.² Westhof, E.³

126
- 0031566427
- Auffinger P, Westhof E. 1997. J. Mol. Biol. 269:326-41
- (1997) J. Mol. Biol. , vol.269 , pp. 326-341
- Auffinger, P.¹ Westhof, E.²

127
- 0030763137
- Hud NV, Feigon J. 1997. J. Am. Chem. Soc. 119:5756-57
- (1997) J. Am. Chem. Soc. , vol.119 , pp. 5756-5757
- Hud, N.V.¹ Feigon, J.²

128
- 0032499635
- Shui XQ, McFail-Ison L, Hu GG, Williams LD. 1998. Biochemistry 37:8341-55
- (1998) Biochemistry , vol.37 , pp. 8341-8355
- Shui, X.Q.¹ McFail-Ison, L.² Hu, G.G.³ Williams, L.D.⁴

129
- 0032468876
- Lyubartsev AP, Laaksonen A. 1998. J. Biomol. Struct. Dyn. 16:579-92
- (1998) J. Biomol. Struct. Dyn. , vol.16 , pp. 579-592
- Lyubartsev, A.P.¹ Laaksonen, A.²

130
- 0033600794
- Chiu TK, Kaczor-Grzeskowiak M, Dickerson RE. 1999. J. Mol. Biol. 292:589-608
- (1999) J. Mol. Biol. , vol.292 , pp. 589-608
- Chiu, T.K.¹ Kaczor-Grzeskowiak, M.² Dickerson, R.E.³

131
- 0032560959
- Srinivasan J, Cheatham TE III, Cieplak P, Kollman PA, Case DA. 1998. J. Am. Chem. Soc. 120:9401-9
- (1998) J. Am. Chem. Soc. , vol.120 , pp. 9401-9409
- Srinivasan, J.¹ Cheatham T.E. III² Cieplak, P.³ Kollman, P.A.⁴ Case, D.A.⁵

132
- 0032556243
- Jayaram B, Sprous D, Young MA, Beveridge DL. 1998. J. Am. Chem. Soc. 120:10629-33
- (1998) J. Am. Chem. Soc. , vol.120 , pp. 10629-10633
- Jayaram, B.¹ Sprous, D.² Young, M.A.³ Beveridge, D.L.⁴

133
- 0032466648
- Srinivasan J, Miller JL, Kollman PA, Case DA. 1998. J. Biomol. Struct. Dyn. 16:671-82
- (1998) J. Biomol. Struct. Dyn. , vol.16 , pp. 671-682
- Srinivasan, J.¹ Miller, J.L.² Kollman, P.A.³ Case, D.A.⁴

134
- 0033057703
- Reyes CM, Kollman PA. 1999. RNA 5:235-44
- (1999) RNA , vol.5 , pp. 235-244
- Reyes, C.M.¹ Kollman, P.A.²

135
- 7044239742
- Kollman PA. 1993. Chem. Rev. 93:2395-417
- (1993) Chem. Rev. , vol.93 , pp. 2395-2417
- Kollman, P.A.¹

136
- 0033553117
- Singh SB, Kollman PA. 1999. J. Am. Chem. Soc. 121:3267-71
- (1999) J. Am. Chem. Soc. , vol.121 , pp. 3267-3271
- Singh, S.B.¹ Kollman, P.A.²

137
- 0024578173
- Beveridge DL, DiCapua FM. 1989. Annu. Rev. Biophys. Biophys. Chem. 18:431-92
- (1989) Annu. Rev. Biophys. Biophys. Chem. , vol.18 , pp. 431-492
- Beveridge, D.L.¹ Dicapua, F.M.²

138
- 0032753202
- Stofer E, Chipot C, Lavery R. 1999. J. Am. Chem. Soc. 121:9503-8
- (1999) J. Am. Chem. Soc. , vol.121 , pp. 9503-9508
- Stofer, E.¹ Chipot, C.² Lavery, R.³

139
- 0000435148
- Arora N, JayaramB. 1998. J. Phys. Chem. B 102:6139-44
- (1998) J. Phys. Chem. B , vol.102 , pp. 6139-6144
- Arora, N.¹

140
- 0027936615
- Norberg J, Nilsson L. 1994. Biophys. J. 67:812-24
- (1994) Biophys. J. , vol.67 , pp. 812-824
- Norberg, J.¹ Nilsson, L.²

141
- 0028884677
- Norberg J, Nilsson L. 1995. Biophys. J. 69:2277-85
- (1995) Biophys. J. , vol.69 , pp. 2277-2285
- Norberg, J.¹ Nilsson, L.²

142
- 0029583784
- Norberg J, Nilsson L. 1995. J. Am. Chem. Soc. 117:10832-40
- (1995) J. Am. Chem. Soc. , vol.117 , pp. 10832-10840
- Norberg, J.¹ Nilsson, L.²

143
- 0001762873
- Norberg J, Nilsson L. 1995. J. Phys. Chem. 99:13056-58
- (1995) J. Phys. Chem. , vol.99 , pp. 13056-13058
- Norberg, J.¹ Nilsson, L.²

144
- 33748660103
- Norberg J, Nilsson L. 1996. J. Phys. Chem. 100:2550-54
- (1996) J. Phys. Chem. , vol.100 , pp. 2550-2554
- Norberg, J.¹ Nilsson, L.²

145
- 0030561341
- Norberg J, Nilsson L. 1996. Biopolymers 39:765-68
- (1996) Biopolymers , vol.39 , pp. 765-768
- Norberg, J.¹ Nilsson, L.²

146
- 0031972564
- Norberg J, Nilsson L. 1998. Biophys. J. 74:394-402
- (1998) Biophys. J. , vol.74 , pp. 394-402
- Norberg, J.¹ Nilsson, L.²

147
- 0344327079
- MacKerell AD Jr, Lee GU. 1999. Eur. Biophys. J. 28:415-26
- (1999) Eur. Biophys. J. , vol.28 , pp. 415-426
- MacKerell A.D., Jr.¹ Lee, G.U.²

148
- 0029899989
- LeBrun A, Lavery R. 1996. Nucleic Acids Res. 24:2260-67
- (1996) Nucleic Acids Res. , vol.24 , pp. 2260-2267
- Lebrun, A.¹ Lavery, R.²

149
- 0032452455
- LeBrun A, Lavery R. 1998. J. Biomol. Struct. Dyn. 16:593-604
- (1998) J. Biomol. Struct. Dyn. , vol.16 , pp. 593-604
- Lebrun, A.¹ Lavery, R.²

150
- 0033603393
- Kosikov KM, Gorin AA, Zhurkin VB, Olson WK. 1999. J. Mol. Biol. 289:1301-26
- (1999) J. Mol. Biol. , vol.289 , pp. 1301-1326
- Kosikov, K.M.¹ Gorin, A.A.² Zhurkin, V.B.³ Olson, W.K.⁴

151
- 0033393463
- Lavery R, LeBrun A. 1999. Genetica 106:75-84
- (1999) Genetica , vol.106 , pp. 75-84
- Lavery, R.¹ Lebrun, A.²

152
- 0029909230
- Konrad MW, Bolonick JI. 1996. J. Am. Chem. Soc. 118:10989-94
- (1996) J. Am. Chem. Soc. , vol.118 , pp. 10989-10994
- Konrad, M.W.¹ Bolonick, J.I.²

153
- 0029006896
- Young MA, Ravishanker G, Beveridge DL, Berman HM. 1995. Biophys. J. 68:2454-68
- (1995) Biophys. J. , vol.68 , pp. 2454-2468
- Young, M.A.¹ Ravishanker, G.² Beveridge, D.L.³ Berman, H.M.⁴

154
- 0033613915
- Sprous D, Young MA, Beveridge DL. 1999. J. Mol. Biol. 285:1623-32
- (1999) J. Mol. Biol. , vol.285 , pp. 1623-1632
- Sprous, D.¹ Young, M.A.² Beveridge, D.L.³

155
- 0025312950
- Hagerman PJ. 1990. Annu. Rev. Biochem. 59:755-81
- (1990) Annu. Rev. Biochem. , vol.59 , pp. 755-781
- Hagerman, P.J.¹

156
- 0000541574
- ed. R Sarma, M Sarma, Schenectady, NY: Adenine
- Olson WK, Zhurkin VB. 1996. In Biological Structure and Dynamics, ed. R Sarma, M Sarma, pp. 341-70. Schenectady, NY: Adenine
- (1996) Biological Structure and Dynamics , pp. 341-370
- Olson, W.K.¹ Zhurkin, V.B.²

157
- 0006824282
- ed. WK Olson, Albany,NY:Adenine
- Sundaralingam M, Sekharudu YC. 1988. In Structure and Expression, ed. WK Olson, pp. 9-23. Albany, NY: Adenine
- (1988) Structure and Expression , pp. 9-23
- Sundaralingam, M.¹ Sekharudu, Y.C.²

158
- 0025228644
- Koo HS, Drak J, Rice JA, Crothers DM. 1990. Biochemistry 29:4227-34
- (1990) Biochemistry , vol.29 , pp. 4227-4234
- Koo, H.S.¹ Drak, J.² Rice, J.A.³ Crothers, D.M.⁴

159
- 0023218540
- Zinkel SS, Crothers DM. 1987. Nature 328:178-81
- (1987) Nature , vol.328 , pp. 178-181
- Zinkel, S.S.¹ Crothers, D.M.²

160
- 0029006742
- Sprous D, Zacharias W, Woods ZA, Harvey SC. 1995. Nucleic Acids Res. 23:1816-21
- (1995) Nucleic Acids Res. , vol.23 , pp. 1816-1821
- Sprous, D.¹ Zacharias, W.² Woods, Z.A.³ Harvey, S.C.⁴

161
- 0029978007
- Dickerson RE, Goodsell D, Kopka ML. 1996. J. Mol. Biol. 256:108-25
- (1996) J. Mol. Biol. , vol.256 , pp. 108-125
- Dickerson, R.E.¹ Goodsell, D.² Kopka, M.L.³

162
- 0023666166
- Burkhoff AM, Tullius TD. 1987. Cell 48:935-43
- (1987) Cell , vol.48 , pp. 935-943
- Burkhoff, A.M.¹ Tullius, T.D.²

163
- 0001874501
- ed. WK Olson, Albany, NY: Adenine
- Tullius TD, Burkhoff AM. 1988. In Structure and Expression, ed. WK Olson, pp. 77-85. Albany, NY: Adenine
- (1988) Structure and Expression , pp. 77-85
- Tullius, T.D.¹ Burkhoff, A.M.²

164
- 0022527052
- Hagerman PJ. 1986. Nature 321:449-50
- (1986) Nature , vol.321 , pp. 449-450
- Hagerman, P.J.¹

165
- 0033618122
- Sherer EC, Harris SA, Soliva R, Orozco M, Laughton CA. 1999. J. Am. Chem. Soc. 121:5981-91
- (1999) J. Am. Chem. Soc. , vol.121 , pp. 5981-5991
- Sherer, E.C.¹ Harris, S.A.² Soliva, R.³ Orozco, M.⁴ Laughton, C.A.⁵

166
- 0031552364
- Shatzky-Schwartz M, Arbuckle ND, Eisenstein M, Rabinovich D, Bareket-Samish A, et al. 1997. J. Mol. Biol. 267:595-623
- (1997) J. Mol. Biol. , vol.267 , pp. 595-623
- Shatzky-Schwartz, M.¹ Arbuckle, N.D.² Eisenstein, M.³ Rabinovich, D.⁴ Bareket-Samish, A.⁵

167
- 0029804674
- Miaskiewicz K, Miller J, Cooney M, Osman R. 1996. J. Am. Chem. Soc. 118:9156-63
- (1996) J. Am. Chem. Soc. , vol.118 , pp. 9156-9163
- Miaskiewicz, K.¹ Miller, J.² Cooney, M.³ Osman, R.⁴

168
- 0030745348
- Spector TI, Cheatham TE III, Kollman PA. 1997. J. Am. Chem. Soc. 119:7095-104
- (1997) J. Am. Chem. Soc. , vol.119 , pp. 7095-7104
- Spector, T.I.¹ Cheatham T.E. III² Kollman, P.A.³

169
- 0032522136
- Yamaguchi H, van Aalten DMF, Pinak M, Furukawa A, Osman R. 1998. Nucleic Acids Res. 26:1939-46
- (1998) Nucleic Acids Res. , vol.26 , pp. 1939-1946
- Yamaguchi, H.¹ Van Aalten, D.M.F.² Pinak, M.³ Furukawa, A.⁴ Osman, R.⁵

170
- 0027441950
- Amadei A, Linseen ABM, Berendsen HJC. 1993. Proteins 17:412-25
- (1993) Proteins , vol.17 , pp. 412-425
- Amadei, A.¹ Linseen, A.B.M.² Berendsen, H.J.C.³

171
- 0028864424
- Gueron M, Leroy JL. 1995. Methods Enzymol. 261:383-413
- (1995) Methods Enzymol. , vol.261 , pp. 383-413
- Gueron, M.¹ Leroy, J.L.²

172
- 0033548682
- Dornberger U, Leijon M, Fritsche H. 1999. J. Biol. Chem. 274:6957-62
- (1999) J. Biol. Chem. , vol.274 , pp. 6957-6962
- Dornberger, U.¹ Leijon, M.² Fritsche, H.³

173
- 0029120978
- Nonin S, Leroy JL, Gueron M. 1995. Biochemistry 34:10652-59
- (1995) Biochemistry , vol.34 , pp. 10652-10659
- Nonin, S.¹ Leroy, J.L.² Gueron, M.³

174
- 0033006629
- Dhavan GM, Lapham J, Yang S, Crothers DM. 1999. J. Mol. Biol. 288:659-71
- (1999) J. Mol. Biol. , vol.288 , pp. 659-671
- Dhavan, G.M.¹ Lapham, J.² Yang, S.³ Crothers, D.M.⁴

175
- 0030991442
- Moran S, Ren RXF, Rumney S, Kool ET. 1997. J. Am. Chem. Soc. 119:2056-57
- (1997) J. Am. Chem. Soc. , vol.119 , pp. 2056-2057
- Moran, S.¹ Ren, R.X.F.² Rumney, S.³ Kool, E.T.⁴

176
- 0031790169
- Guckian KM, Krugh TR, Kool ET. 1998. Nat. Struct. Biol. 5:954-59
- (1998) Nat. Struct. Biol. , vol.5 , pp. 954-959
- Guckian, K.M.¹ Krugh, T.R.² Kool, E.T.³

177
- 0033595533
- Cubero E, Sherer EC, Luque FJ, Orozco M, Laughton CA. 1999. J. Am. Chem. Soc. 121:8653-54
- (1999) J. Am. Chem. Soc. , vol.121 , pp. 8653-8654
- Cubero, E.¹ Sherer, E.C.² Luque, F.J.³ Orozco, M.⁴ Laughton, C.A.⁵

178
- 0028940854
- Cheng Y-K, Pettitt BM. 1995. Biopolymers 35:457-73
- (1995) Biopolymers , vol.35 , pp. 457-473
- Cheng, Y.-K.¹ Pettitt, B.M.²

179
- 0032508869
- Soliva R, Laughton CA, Luque FJ, Orozco M. 1998. J. Am. Chem. Soc. 120:11226-33
- (1998) J. Am. Chem. Soc. , vol.120 , pp. 11226-11233
- Soliva, R.¹ Laughton, C.A.² Luque, F.J.³ Orozco, M.⁴

180
- 0040164390
- Spackova N, Berger I, Sponer J. 1999. J. Am. Chem. Soc. 121:5519-34
- (1999) J. Am. Chem. Soc. , vol.121 , pp. 5519-5534
- Spackova, N.¹ Berger, I.² Sponer, J.³

181
- 0031749572
- Spackova N, Berger I, EgIi M, Sponer J. 1998. J. Am. Chem. Soc. 120:6147-51
- (1998) J. Am. Chem. Soc. , vol.120 , pp. 6147-6151
- Spackova, N.¹ Berger, I.² Egii, M.³ Sponer, J.⁴

182
- 0030849184
- Hermann T, Auffinger P, Scott WG, Westhof E. 1997. Nucleic Acids Res. 25:3421-27
- (1997) Nucleic Acids Res. , vol.25 , pp. 3421-3427
- Hermann, T.¹ Auffinger, P.² Scott, W.G.³ Westhof, E.⁴

183
- 0031915278
- Hermann T, Auffinger P, Westhof E. 1998. Eur. Biophys. J. 27:153-65
- (1998) Eur. Biophys. J. , vol.27 , pp. 153-165
- Hermann, T.¹ Auffinger, P.² Westhof, E.³

184
- 0033010186
- Hermann T, Westhof E. 1999. Nat. Struct. Biol. 6:540-44
- (1999) Nat. Struct. Biol. , vol.6 , pp. 540-544
- Hermann, T.¹ Westhof, E.²

185
- 0003634460
- ed. GER Benne. Washington, DC: Am. Soc. Microbiol
- Auffinger P, Westhof E. 1998. In Modification and Editing of RNA, ed. GER Benne. Washington, DC: Am. Soc. Microbiol.
- (1998) Modification and Editing of Rna
- Auffinger, P.¹ Westhof, E.²

186
- 0032907143
- Auffinger P, Louise-May S, Westhof E. 1999. Biophys. J. 76:50-64
- (1999) Biophys. J. , vol.76 , pp. 50-64
- Auffinger, P.¹ Louise-May, S.² Westhof, E.³

187
- 0032576192
- Mazur AK. 1998. J. Am. Chem. Soc. 120:10928-37
- (1998) J. Am. Chem. Soc. , vol.120 , pp. 10928-10937
- Mazur, A.K.¹

188
- 0032757340
- Garemyr R, Elofsson A. 1999. Proteins 37:417-28
- (1999) Proteins , vol.37 , pp. 417-428
- Garemyr, R.¹ Elofsson, A.²

189
- 0001585447
- Gilson MK, Davis ME, Luty BA, McCammon JA. 1993. J. Phys. Chem. 97:3591-600
- (1993) J. Phys. Chem. , vol.97 , pp. 3591-3600
- Gilson, M.K.¹ Davis, M.E.² Luty, B.A.³ McCammon, J.A.⁴

190
- 0031552979
- Hawkins GD, Cramer CJ, Truhlar DG. 1997. J. Phys. Chem. B 101:7147-57
- (1997) J. Phys. Chem. B , vol.101 , pp. 7147-7157
- Hawkins, G.D.¹ Cramer, C.J.² Truhlar, D.G.³

191
- 0000152754
- ed. BJ Berne, New York: Plenum
- Valleau JP, Whittington SG. 1977. In A Guide to Monte Carlo for Statistical Mechanics: 1. Highways, ed. BJ Berne, pp. 137-68. New York: Plenum
- (1977) A Guide to Monte Carlo for Statistical Mechanics: 1. Highways , pp. 137-168
- Valleau, J.P.¹ Whittington, S.G.²

192
- 0032221749
- Cheatham TE III, Brooks BR. 1998. Theor. Chem. Acc. 99:279-88
- (1998) Theor. Chem. Acc. , vol.99 , pp. 279-288
- Cheatham T.E. III¹ Brooks, B.R.²

193
- 0000112790
- Smith PE, Pettitt BM. 1996. J. Chem. Phys. 105:4289-93
- (1996) J. Chem. Phys. , vol.105 , pp. 4289-4293
- Smith, P.E.¹ Pettitt, B.M.²

194
- 0001476142
- Smith PE, Blatt HD, Pettitt BM. 1997. J. Phys. Chem. B 101:3886-90
- (1997) J. Phys. Chem. B , vol.101 , pp. 3886-3890
- Smith, P.E.¹ Blatt, H.D.² Pettitt, B.M.³

195
- 0001490366
- Luty BA, van Gunsteren WF. 1996. J. Phys. Chem. 100:2581-87
- (1996) J. Phys. Chem. , vol.100 , pp. 2581-2587
- Luty, B.A.¹ Van Gunsteren, W.F.²

196
- 0030889250
- Norberto de Souza O, Ornstein RL. 1997. J. Biomol. Struct. Dyn. 14:607-11
- (1997) J. Biomol. Struct. Dyn. , vol.14 , pp. 607-611
- Norberto De Souza, O.¹ Ornstein, R.L.²

197
- 0000952715
- Norberto de Souza O, Ornstein RL. 1997. Biophys. J. 72:2395-97
- (1997) Biophys. J. , vol.72 , pp. 2395-2397
- Norberto De Souza, O.¹ Ornstein, R.L.²

198
- 0031577316
- Miller JL, Kollman PA. 1991. J. Mol. Biol. 270:436-50
- (1991) J. Mol. Biol. , vol.270 , pp. 436-450
- Miller, J.L.¹ Kollman, P.A.²

199
- 0032578192
- Simmerling C, Miller JL, Kollman PA. 1998. J. Am. Chem. Soc. 120:7149-55
- (1998) J. Am. Chem. Soc. , vol.120 , pp. 7149-7155
- Simmerling, C.¹ Miller, J.L.² Kollman, P.A.³

200
- 0031834850
- Ibragimova GT, Wade RC. 1998. Biophys. J. 74:2906-11
- (1998) Biophys. J. , vol.74 , pp. 2906-2911
- Ibragimova, G.T.¹ Wade, R.C.²

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