-
1
-
-
0022992561
-
-
(a) Tramontano, A.; Janda, K. D.; Lerner, R. A. Science 1986, 234, 1566-1570.
-
(1986)
Science
, vol.234
, pp. 1566-1570
-
-
Tramontano, A.1
Janda, K.D.2
Lerner, R.A.3
-
2
-
-
0022991435
-
-
(b) Pollack, S. J.; Jacobs, J. W.; Schultz, P. G. Science 1986, 234, 1570-1573.
-
(1986)
Science
, vol.234
, pp. 1570-1573
-
-
Pollack, S.J.1
Jacobs, J.W.2
Schultz, P.G.3
-
10
-
-
53149142805
-
Stereoselective reactions with catalytic antibodies
-
(h) Hilvert, D. Stereoselective reactions with catalytic antibodies. Top. Stereochem. 1999, 22, 83-135.
-
(1999)
Top. Stereochem.
, vol.22
, pp. 83-135
-
-
Hilvert, D.1
-
13
-
-
0242515838
-
-
(k) Barbany, M.; Gutierrez-de-Teran, H.; Sanz, F.; Villa-Freixa, J.; Warshel, A. ChemBioChem 2003 4, 277-285.
-
(2003)
ChemBioChem
, vol.4
, pp. 277-285
-
-
Barbany, M.1
Gutierrez-De-Teran, H.2
Sanz, F.3
Villa-Freixa, J.4
Warshel, A.5
-
14
-
-
0036882403
-
-
(l) Tanaka, F. Chem. Rev. 2002, 102, 4885-4906.
-
(2002)
Chem. Rev.
, vol.102
, pp. 4885-4906
-
-
Tanaka, F.1
-
15
-
-
0034427249
-
-
(a) Shreder, K. Methods 2000, 20, 372-379.
-
(2000)
Methods
, vol.20
, pp. 372-379
-
-
Shreder, K.1
-
18
-
-
0034639446
-
-
(d) Hasserodt, J.; Janda, K. D.; Lerner, R. A. J. Am. Chem. Soc. 2000, 122, 40-45.
-
(2000)
J. Am. Chem. Soc.
, vol.122
, pp. 40-45
-
-
Hasserodt, J.1
Janda, K.D.2
Lerner, R.A.3
-
19
-
-
0029959359
-
-
(e) Bjornestedt, R.; Zhong, G.; Lerner, R. A.; Barbas, C. F., III. J. Am. Chem. Soc. 1996, 118, 11720-11724.
-
(1996)
J. Am. Chem. Soc.
, vol.118
, pp. 11720-11724
-
-
Bjornestedt, R.1
Zhong, G.2
Lerner, R.A.3
Barbas III, C.F.4
-
20
-
-
3543083032
-
-
(f) Janda, K. D.; Schloder, D.; Bankovic, S. J.; Lerner, R. A. Science 1988, 241, 437-440.
-
(1988)
Science
, vol.241
, pp. 437-440
-
-
Janda, K.D.1
Schloder, D.2
Bankovic, S.J.3
Lerner, R.A.4
-
22
-
-
1842578276
-
-
(h) Mitsuda, Y.; Hifumi, E.; Tsuruhata, K.; Fujinami, H.; Yamamoio, N.; Uda, T. Biotechnol. Bioeng. 2004, 86, 217-225.
-
(2004)
Biotechnol. Bioeng.
, vol.86
, pp. 217-225
-
-
Mitsuda, Y.1
Hifumi, E.2
Tsuruhata, K.3
Fujinami, H.4
Yamamoio, N.5
Uda, T.6
-
23
-
-
0042307517
-
-
(i) Aggarwal, R.; Benedetti, F.; Berti, F.; Buchini, S.; Colombatti, A.; Dinon, F.; Galasso, V.; Norbedo, S. Chem. Eur. J. 2003, 9, 3132-3142.
-
(2003)
Chem. Eur. J.
, vol.9
, pp. 3132-3142
-
-
Aggarwal, R.1
Benedetti, F.2
Berti, F.3
Buchini, S.4
Colombatti, A.5
Dinon, F.6
Galasso, V.7
Norbedo, S.8
-
24
-
-
0037403303
-
-
(j) Saveliev, A. N.; Ivanen, D. R.; Kulminskaya, A. A.; Ershova, N. A.; Kanyshkova, T. G.; Buneva, V. N.; Mogelnitskii, A. S.; Doronin, B. M.; Favorova, O. O.; Nevinsky, G. A.; Neustroev, K. N. Immunol. Lett. 2003, 86, 291-297.
-
(2003)
Immunol. Lett.
, vol.86
, pp. 291-297
-
-
Saveliev, A.N.1
Ivanen, D.R.2
Kulminskaya, A.A.3
Ershova, N.A.4
Kanyshkova, T.G.5
Buneva, V.N.6
Mogelnitskii, A.S.7
Doronin, B.M.8
Favorova, O.O.9
Nevinsky, G.A.10
Neustroev, K.N.11
-
25
-
-
0028913329
-
-
(a) Janda, K. D.; Shevlin, C. G.; Lernet, R. A. J. Am. Chem. Soc. 1995, 117, 2659-2671.
-
(1995)
J. Am. Chem. Soc.
, vol.117
, pp. 2659-2671
-
-
Janda, K.D.1
Shevlin, C.G.2
Lernet, R.A.3
-
26
-
-
3543104035
-
-
(b) Gouverneur, V. E.; dePascul-Teressa, B.; Beno, B.; Janda, K. D.; Lerner, R. A. Science 1993, 202, 204-214.
-
(1993)
Science
, vol.202
, pp. 204-214
-
-
Gouverneur, V.E.1
DePascul-Teressa, B.2
Beno, B.3
Janda, K.D.4
Lerner, R.A.5
-
27
-
-
0030056177
-
-
(c) Flanagan, M. E.; Jacobsen, J. R.; Sweet, E.; Schultz, P. G. J. Am. Chem. Soc. 1996, 118, 6078-6079.
-
(1996)
J. Am. Chem. Soc.
, vol.118
, pp. 6078-6079
-
-
Flanagan, M.E.1
Jacobsen, J.R.2
Sweet, E.3
Schultz, P.G.4
-
28
-
-
0029997136
-
-
(d) Yoon, S. S.; Oei, Y.; Sweet, E.; Schultz, P. G. J. Am. Chem. Soc. 1996, 118, 11686-11687.
-
(1996)
J. Am. Chem. Soc.
, vol.118
, pp. 11686-11687
-
-
Yoon, S.S.1
Oei, Y.2
Sweet, E.3
Schultz, P.G.4
-
29
-
-
0030009946
-
-
(e) Uno, T.; Ku, J.; Prudent, J. R.; Huang, A.; Schultz, P. G. J. Am. Chem. Soc. 1996, 118, 3811-3817.
-
(1996)
J. Am. Chem. Soc.
, vol.118
, pp. 3811-3817
-
-
Uno, T.1
Ku, J.2
Prudent, J.R.3
Huang, A.4
Schultz, P.G.5
-
30
-
-
0029590066
-
-
(f) Wagner, J.; Lerner, R. A.; Barbas, C. F., III. Science 1995, 270, 1797-1800.
-
(1995)
Science
, vol.270
, pp. 1797-1800
-
-
Wagner, J.1
Lerner, R.A.2
Barbas III, C.F.3
-
31
-
-
0032054562
-
-
(g) Hoffmann, T.; Zhong, G.; List, B.; Shabat, D.; Anderson, J.; Gramatikova, S.; Lerner, R. A.; Barbas, C. F., III. J. Am. Chem. Soc. 1998, 720, 2768-2779.
-
(1998)
J. Am. Chem. Soc.
, vol.720
, pp. 2768-2779
-
-
Hoffmann, T.1
Zhong, G.2
List, B.3
Shabat, D.4
Anderson, J.5
Gramatikova, S.6
Lerner, R.A.7
Barbas III, C.F.8
-
32
-
-
0037108184
-
-
(h) Turner, J. M.; Larsen, N. A.; Basran, A.; Barbas, C. F., III; Brace, N. C.; Wilson, I. A.; Lerner, R. A. Biochemistry 2002, 41, 12297-12307.
-
(2002)
Biochemistry
, vol.41
, pp. 12297-12307
-
-
Turner, J.M.1
Larsen, N.A.2
Basran, A.3
Barbas III, C.F.4
Brace, N.C.5
Wilson, I.A.6
Lerner, R.A.7
-
33
-
-
0033151779
-
-
(i) Gruber, K.; Zhou, B.; Houk, K. N.; Lerner, R. A.; Shevlin, C. G.; Wilson, I. A. Biochemistry 1999, 38, 7062-7074.
-
(1999)
Biochemistry
, vol.38
, pp. 7062-7074
-
-
Gruber, K.1
Zhou, B.2
Houk, K.N.3
Lerner, R.A.4
Shevlin, C.G.5
Wilson, I.A.6
-
34
-
-
0034833548
-
-
(j) Jones, L. H.; Harwig, C. W.; Wentworth, P., Jr.; Simeonov, A.; Wentworth, A. D.; Py, S.; Ashley, J. A.; Lerner, R. A.; Janda, K. D. J. Am. Chem. Soc. 2001, 123, 3607-3608.
-
(2001)
J. Am. Chem. Soc.
, vol.123
, pp. 3607-3608
-
-
Jones, L.H.1
Harwig, C.W.2
Wentworth Jr., P.3
Simeonov, A.4
Wentworth, A.D.5
Py, S.6
Ashley, J.A.7
Lerner, R.A.8
Janda, K.D.9
-
35
-
-
0030767734
-
-
(k) Zhong, G.; Hoffmann, T.; Lerner, R. A.; Danishefsky, S.; Barbas, C. F., III. J. Am. Chem. Soc. 1997, 119, 8131-8132.
-
(1997)
J. Am. Chem. Soc.
, vol.119
, pp. 8131-8132
-
-
Zhong, G.1
Hoffmann, T.2
Lerner, R.A.3
Danishefsky, S.4
Barbas III, C.F.5
-
37
-
-
0028011543
-
-
(m) Guo, J. C.; Huang, W.; Scanlan, T. S. J. Am. Chem. Soc. 1994, 116, 6062-6069.
-
(1994)
J. Am. Chem. Soc.
, vol.116
, pp. 6062-6069
-
-
Guo, J.C.1
Huang, W.2
Scanlan, T.S.3
-
38
-
-
0032507274
-
-
(n) Driggers, E. M.; Cho, H. S.; Liu, C. W.; Katzka, C. P.; Braisted, A. C.; Ulrich, H. D.; Wemmer, D. E.; Schultz, P. G. J. Am. Chem. Soc. 1998, 120, 1945-1958.
-
(1998)
J. Am. Chem. Soc.
, vol.120
, pp. 1945-1958
-
-
Driggers, E.M.1
Cho, H.S.2
Liu, C.W.3
Katzka, C.P.4
Braisted, A.C.5
Ulrich, H.D.6
Wemmer, D.E.7
Schultz, P.G.8
-
39
-
-
0242528520
-
-
(o) Tremblay, M. R.; Dickerson, T. J.; Janda, K. D. Adv. Synth. Catal. 2001, 343, 577-585.
-
(2001)
Adv. Synth. Catal.
, vol.343
, pp. 577-585
-
-
Tremblay, M.R.1
Dickerson, T.J.2
Janda, K.D.3
-
40
-
-
0037471234
-
-
(p) Sapier, S.; Sinha, S. C.; Keinan, E. Angew. Chem., Int. Ed. 2003, 42, 1378-1381.
-
(2003)
Angew. Chem., Int. Ed.
, vol.42
, pp. 1378-1381
-
-
Sapier, S.1
Sinha, S.C.2
Keinan, E.3
-
41
-
-
0036999120
-
-
(q) Pungenta, M. D.; Weiler, L.; Ziltener, H. J. Can. J. Chem. 2002, 80, 1643-1645.
-
(2002)
Can. J. Chem.
, vol.80
, pp. 1643-1645
-
-
Pungenta, M.D.1
Weiler, L.2
Ziltener, H.J.3
-
42
-
-
0035845637
-
-
Example of affinity matching through maturation; Yin, J.; Mundorff, E. C.; Yang, P. L.; Wendt, K. U.; Hanway, D.; Stevens, R. C.; Schultz, P. G. Biochemistry 2001, 40, 10764-10773.
-
(2001)
Biochemistry
, vol.40
, pp. 10764-10773
-
-
Yin, J.1
Mundorff, E.C.2
Yang, P.L.3
Wendt, K.U.4
Hanway, D.5
Stevens, R.C.6
Schultz, P.G.7
-
44
-
-
0025730616
-
-
(b) Lerner, R. A.; Benkovic, S. J.; Schultz, P. G. Science 1991, 252, 659-667.
-
(1991)
Science
, vol.252
, pp. 659-667
-
-
Lerner, R.A.1
Benkovic, S.J.2
Schultz, P.G.3
-
45
-
-
0027951083
-
-
(a) Braisted, A. C.; Schultz, P. G. J. Am. Chem. Soc. 1994, 116, 6, 2211-2212.
-
(1994)
J. Am. Chem. Soc.
, vol.116
, Issue.6
, pp. 2211-2212
-
-
Braisted, A.C.1
Schultz, P.G.2
-
46
-
-
0030930805
-
-
(b) Ulrich, H. D.; Mundorff, E. C.; Santarsiero, B. D.; Driggers, E. M.; Stevens, R. C.; Schultz, P. G. Nature 1997, 389, 271-275.
-
(1997)
Nature
, vol.389
, pp. 271-275
-
-
Ulrich, H.D.1
Mundorff, E.C.2
Santarsiero, B.D.3
Driggers, E.M.4
Stevens, R.C.5
Schultz, P.G.6
-
47
-
-
0032507274
-
-
(c) Driggers, E. M.; Cho, H. S.; Liu, C. W.; Katzka, C. P.; Braisted, A. C.; Ulrich, H. D.; Wemmer, D. E.; Schultz, P. G. J. Am. Chem. Soc. 1998, 120, 1945-1958.
-
(1998)
J. Am. Chem. Soc.
, vol.120
, pp. 1945-1958
-
-
Driggers, E.M.1
Cho, H.S.2
Liu, C.W.3
Katzka, C.P.4
Braisted, A.C.5
Ulrich, H.D.6
Wemmer, D.E.7
Schultz, P.G.8
-
48
-
-
17044444457
-
-
(d) Mundorff, E. C.; Hanson, M. A.; Varvak, A.; Ulrich, H. D.; Schultz, P. G.; Stevens, R. C. Biochemistry 2000, 39, 627-632.
-
(2000)
Biochemistry
, vol.39
, pp. 627-632
-
-
Mundorff, E.C.1
Hanson, M.A.2
Varvak, A.3
Ulrich, H.D.4
Schultz, P.G.5
Stevens, R.C.6
-
49
-
-
0037164076
-
-
Asada, T.; Gouda, H.; Kollman, P. A. J. Am. Chem. Soc. 2002, 124, 12535-12542.
-
(2002)
J. Am. Chem. Soc.
, vol.124
, pp. 12535-12542
-
-
Asada, T.1
Gouda, H.2
Kollman, P.A.3
-
53
-
-
0000807109
-
-
(b) Evans, D. A.; Baillargeon, D. J.; Nelson, J. V. J. Am. Chem. Soc. 1978, 100, 2242-2244.
-
(1978)
J. Am. Chem. Soc.
, vol.100
, pp. 2242-2244
-
-
Evans, D.A.1
Baillargeon, D.J.2
Nelson, J.V.3
-
56
-
-
0002202998
-
Anion-assisted sigmatropic rearrangements
-
(b) Wilson, S. R. Anion-assisted sigmatropic rearrangements. Org. React (New York) 1993, 43, 93-250.
-
(1993)
Org. React (New York)
, vol.43
, pp. 93-250
-
-
Wilson, S.R.1
-
58
-
-
0004266297
-
-
Academic Press: New York
-
For a review of experimental work, see: (a) Gajewski, J. J. Hydrocarbon Thermal Isomerizations; Academic Press: New York, 1981; pp 166-176.
-
(1981)
Hydrocarbon Thermal Isomerizations
, pp. 166-176
-
-
Gajewski, J.J.1
-
59
-
-
0002549529
-
Pericyclic reaction transitition states: Passions and punctilios, 1935-1995
-
For an account of mechanistic controversies, see: (b) Houk, K. N.; Gonzalez, J.; Li, Y. Pericyclic Reaction Transitition States: Passions and Punctilios, 1935-1995. Acc. Chem. Res. 1995, 28, 81-90.
-
(1995)
Acc. Chem. Res.
, vol.28
, pp. 81-90
-
-
Houk, K.N.1
Gonzalez, J.2
Li, Y.3
-
60
-
-
0031556561
-
-
For reviews of computational results, see: (a) Wiest, O.; Montiel, D. C.; Houk, K. N. J. Phys. Chem. A 1997, 101, 8378-8388.
-
(1997)
J. Phys. Chem. A
, vol.101
, pp. 8378-8388
-
-
Wiest, O.1
Montiel, D.C.2
Houk, K.N.3
-
61
-
-
30244518651
-
-
(b) Houk, K. N.; Beno, B. R.; Nendel, M.; Black, K.; Yoo, H. Y.; Wilsey, S.; Lee, J. K. J. Mol. Struct. (THEOCHEM) 1997, 398-399, 169-179.
-
(1997)
J. Mol. Struct. (THEOCHEM)
, vol.398-399
, pp. 169-179
-
-
Houk, K.N.1
Beno, B.R.2
Nendel, M.3
Black, K.4
Yoo, H.Y.5
Wilsey, S.6
Lee, J.K.7
-
62
-
-
0001461906
-
-
Wiest, O.; Black, K. A.; Houk, K. N. J. Am. Chem. Soc. 1994, 116, 10336-10337.
-
(1994)
J. Am. Chem. Soc.
, vol.116
, pp. 10336-10337
-
-
Wiest, O.1
Black, K.A.2
Houk, K.N.3
-
64
-
-
0032515432
-
-
(a) Yoo, H. Y.; Houk, K. N.; Lee, J. K.; Scialdone, M. A.; Meyers, A. I. J. Am. Chem. Soc. 1998, 120, 205-206.
-
(1998)
J. Am. Chem. Soc.
, vol.120
, pp. 205-206
-
-
Yoo, H.Y.1
Houk, K.N.2
Lee, J.K.3
Scialdone, M.A.4
Meyers, A.I.5
-
65
-
-
0033596320
-
-
(b) Haeffner, F.; Houk, K. N.; Reddy, Y. R.; Paquette, L. A. J. Am. Chem. Soc. 1999, 121, 11880-11884.
-
(1999)
J. Am. Chem. Soc.
, vol.121
, pp. 11880-11884
-
-
Haeffner, F.1
Houk, K.N.2
Reddy, Y.R.3
Paquette, L.A.4
-
67
-
-
33845560175
-
-
(d) Steigerwald, M. L.; Goddard, W. A.; Evans, D. A. J. Am. Chem. Soc. 1979, 101, 1994-1997.
-
(1979)
J. Am. Chem. Soc.
, vol.101
, pp. 1994-1997
-
-
Steigerwald, M.L.1
Goddard, W.A.2
Evans, D.A.3
-
68
-
-
0034625899
-
-
Hrovat, D. A.; Chen, J.; Houk, K. N.; Borden, W. T. J. Am. Chem. Soc. 2000, 122, 7456-7460.
-
(2000)
J. Am. Chem. Soc.
, vol.122
, pp. 7456-7460
-
-
Hrovat, D.A.1
Chen, J.2
Houk, K.N.3
Borden, W.T.4
-
71
-
-
0345491105
-
-
(c) Lee, C.; Yang, W.; Parr, R. G. Phys. Rev. B 1988, 37, 785-789.
-
(1988)
Phys. Rev. B
, vol.37
, pp. 785-789
-
-
Lee, C.1
Yang, W.2
Parr, R.G.3
-
72
-
-
0004133516
-
-
Gaussian, Inc.: Pittsburah, PA
-
Frisch, M. J.; Trucks, G. W.; Schlegel, H. B.; Scuseria, G. E.; Robb, M. A.; Cheeseman, J. R.; Zakrzewski, V. G.; Montgomery, J. A., Jr.; Stratmann, R. E.; Burant, J. C.; Dapprich, S.; Millam, J. M.; Daniels, A. D.; Kudin, K. N.; Strain, M. C.; Farkas, O.; Tomasi, J.; Barone, V.; Cossi, M.; Cammi, R.; Mennucci, B.; Pomelli, C.; Adamo, C.; Clifford, S.; Ochterski, J.; Petersson, G. A.; Ayala, P. Y.; Cui, Q.; Morokuma, K.; Malick, D. K.; Rabuck, A. D.; Rashavachari, K.; Foresman, J. B.; Cioslowski, J.; Ortiz, J. V.; Baboul, A. G.; Stefanov, B. B.; Liu, G.; Liashenko, A.; Piskorz, P.; Komaromi, I.; Gomperts, R.; Martin, R. L.; Fox, D. J.; Keith, T.; Al-Laham M. A.; Peng, C. Y.; Nanayakkara A.; Challacombe, M.; Gill, P. M. W.; Johnson, B.; Chen, W.; Wong, M. W.; Andres, J. L.; Gonzalez, C.; Head-Gordon, M.; Replogle, E. S.; Pople, J. A. Gaussian 98, Revision A.9: Gaussian, Inc.: Pittsburah, PA, 1998.
-
(1998)
Gaussian 98, Revision A.9
-
-
Frisch, M.J.1
Trucks, G.W.2
Schlegel, H.B.3
Scuseria, G.E.4
Robb, M.A.5
Cheeseman, J.R.6
Zakrzewski, V.G.7
Montgomery Jr., J.A.8
Stratmann, R.E.9
Burant, J.C.10
Dapprich, S.11
Millam, J.M.12
Daniels, A.D.13
Kudin, K.N.14
Strain, M.C.15
Farkas, O.16
Tomasi, J.17
Barone, V.18
Cossi, M.19
Cammi, R.20
Mennucci, B.21
Pomelli, C.22
Adamo, C.23
Clifford, S.24
Ochterski, J.25
Petersson, G.A.26
Ayala, P.Y.27
Cui, Q.28
Morokuma, K.29
Malick, D.K.30
Rabuck, A.D.31
Rashavachari, K.32
Foresman, J.B.33
Cioslowski, J.34
Ortiz, J.V.35
Baboul, A.G.36
Stefanov, B.B.37
Liu, G.38
Liashenko, A.39
Piskorz, P.40
Komaromi, I.41
Gomperts, R.42
Martin, R.L.43
Fox, D.J.44
Keith, T.45
Al-Laham, M.A.46
Peng, C.Y.47
Nanayakkara, A.48
Challacombe, M.49
Gill, P.M.W.50
Johnson, B.51
Chen, W.52
Wong, M.W.53
Andres, J.L.54
Gonzalez, C.55
Head-Gordon, M.56
Replogle, E.S.57
Pople, J.A.58
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3543061979
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Spartan 5.1.3 (Unix): Wavefunction, Inc., 18401 Von Karman Ave., Suite 370, Irvine, CA 92715
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Spartan 5.1.3 (Unix): Wavefunction, Inc., 18401 Von Karman Ave., Suite 370, Irvine, CA 92715.
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Data for the germline structure were taken from the revised data file for 1DoV.pdb dated 04/10/2000
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Data for the germline structure were taken from the revised data file for 1DoV.pdb dated 04/10/2000.
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79
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0033954256
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Herman, H. M.; Westbrook, J.; Feng, Z.; Gilliland, G.; Bhat, T. N.; Weissig, H.; Shindyalov, I. N.; Bourne, P. E. Nucleic Acids Res. 2000, 28, 235-242.
-
(2000)
Nucleic Acids Res.
, vol.28
, pp. 235-242
-
-
Herman, H.M.1
Westbrook, J.2
Feng, Z.3
Gilliland, G.4
Bhat, T.N.5
Weissig, H.6
Shindyalov, I.N.7
Bourne, P.E.8
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80
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11644261806
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-
Morris, G. M.; Goodsell, D. S.; Halliday R. S.; Huey, R.; Hart, W. E.; Belew, R. K.; Olson, A. J. J. Comput. Chem. 1998, 19, 1639-1662.
-
(1998)
J. Comput. Chem.
, vol.19
, pp. 1639-1662
-
-
Morris, G.M.1
Goodsell, D.S.2
Halliday, R.S.3
Huey, R.4
Hart, W.E.5
Belew, R.K.6
Olson, A.J.7
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83
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0348233443
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Gimer, V.; Khuong, K. S.; Leach, A. G.; Lee, P. S.; Bartberger, M. D.; Houk, K. N. J. Phys. Chem. A 2003, 107, 11445-11459.
-
(2003)
J. Phys. Chem. A
, vol.107
, pp. 11445-11459
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-
Gimer, V.1
Khuong, K.S.2
Leach, A.G.3
Lee, P.S.4
Bartberger, M.D.5
Houk, K.N.6
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(a) Blavins, J. J.; Cooper, D. L.; Karadakov, P. B. J. Phys. Chem. A 2004, 108, 194-202.
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(2004)
J. Phys. Chem. A
, vol.108
, pp. 194-202
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Blavins, J.J.1
Cooper, D.L.2
Karadakov, P.B.3
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(b) The Cope rearrangement for 2,5-dicyano-1,5-hexadiene is degenerate and, therefore, the intermediate is flanked by two transition states which are related by symmetry; these are identical in structure and energy and correspond to a transition state into and a transition state out of the diradical intermediate.
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H50, with a distance between them of 1.63 A°.
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88
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For clarification, 200 docking runs were carried out on each antibody-ligand pair, with each run generating a final, lowest energy configuration. Of those 200 runs, those which generated an essentially identical binding mode and geometry were clustered as an ensemble of like structures, and the number of structures in the cluster along with the mean docking energy is reported.
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Autodock provides an estimate of the free energy of binding, which is based on the mean docking energy we report but also includes corrections based on the conformational degrees of freedom in the ligand. We report the mean docking energy, which takes into account all ligand-protein interactions (van der Waals, electrostatic), because of complications from our placing additional conformational restrictions on the transition-state models.
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