Chromophore-Assisted Laser Inactivation

Methods in Cell Biology

Volumn 82, Issue , 2007, Pages 335-354

  Hoffman Kim, Diane ^a   Diefenbach, Thomas J ^b   Eustace, Brenda K ^c   Jay, Daniel G ^b  

^a BROWN UNIVERSITY   (United States)

^b TUFTS UNIVERSITY SCHOOL OF MEDICINE   (United States)

^c VERTEX PHARMACEUTICALS   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ANTIBODY; FLUORESCEIN ISOTHIOCYANATE;

ANIMAL; FLUORESCENCE; LASER; METABOLISM; REVIEW;

ANIMALS; ANTIBODIES; FLUORESCEIN-5-ISOTHIOCYANATE; FLUORESCENCE; LASERS;

EID: 34250378745     PISSN: 0091679X     EISSN: None     Source Type: Book Series    
DOI: 10.1016/S0091-679X(06)82011-X     Document Type: Review

References (62)

1. Adams S.R., Campbell R.E., Gross L.A., Martin B.R., Walkup G.K., Yao Y., Llopis J., and Tsien R.Y. New biarsenical ligands and tetracysteine motifs for protein labeling in vitro and in vivo: Synthesis and biological applications. J. Am. Chem. Soc. 124 (2002) 6063-6076
2. Alvarez V.A., Ridenour D.A., and Sabatini B.L. Retraction of synapses and dendritic spines induced by off-target effects of RNA interference. J. Neurosci. 26 (2006) 7820-7825
3. Aza-Blanc P., Cooper C.L., Wagner K., Batalov S., Deveraux Q.L., and Cooke M.P. Identification of modulators of TRAIL-induced apoplosis via RNAi-based phenotypic screening. Mol. Cell 12 (2003) 627-637
4. Beck S., Sakurai T., Eustace B.K., Beste G., Schier R., Rudert F., and Jay D.G. Fluorophore-assisted light inactivation: A high-throughput tool for direct target validation of proteins. Proteomics 2 (2002) 247-255
5. Berns K., Hijmans E.M., Mullenders J., Brummelkemp T.R., Velds A., Heimerikx M., Kerkhoven R.M., Madiredjo M., Nijkamp W., Weigelt B., Agami R., Ge W., et al. A large-scale RNAi screen in human cells identifies new components of the p53 pathway. Nature 428 (2004) 431-437
6. Boutros M., Kiger A.A., Armknecht S., Kerr K., Hild M., Koch B., Haas S.A., Consortium H.F., Paro R., and Perrimon N. Genome-wide RNAi analysis of growth and viability in Drosophila cells. Science 303 (2004) 832-835
7. Bredel M., and Jacoby E. Chemogenomics: An emerging strategy for rapid target and drug discovery. Nat. Rev. Genet. 5 (2004) 262-275
8. Buchstaller A., and Jay D.G. Micro-scale chromophore-assisted laser inactivation of nerve growth cone proteins. Microsc. Res. Tech. 48 (2000) 97-106
9. Bulina M.E., Chudakov D.M., Britanova O.V., Yanushevich Y.G., Staroverov D.B., Chepurnykh T.V., Merzlyak E.M., Shkrob M.A., Lukyanov S., and Lukyanov K.A. A genetically encoded photosensitizer. Nat. Biotechnol. 24 (2006) 95-99
10. Castelo L., and Jay D.G. Radixin is involved in lamellipodial stability during nerve growth cone motility. Mol. Biol. Cell 10 (1999) 1511-1520
11. Chang H.Y., Takei K., Sydor A.M., Born T., Rusnak F., and Jay D.G. Asymmetric retraction of growth cone filopodia following focal inactivation of calcineurin. Nature 376 (1995) 686-690
12. Diamond P., Mallavarapu A., Schnipper J., Booth J., Park L., O'Connor T.P., and Jay D.G. Fasciclin I and II have distinct roles in the development of grasshopper pioneer neurons. Neuron 11 (1993) 409-421
13. Diefenbach T.J., Latham V.M., Yimlamai D., Liu C.A., Herman I.M., and Jay D.G. Myosin 1c and myosin IIB serve opposing roles in lamellipodial dynamics of the neuronal growth cone. J. Cell Biol. 158 (2002) 1207-1217
14. Dorsett Y., and Tuschl T. siRNAs: Applications in functional genomics and potential as therapeutics. Nat. Rev. Drug Discov. 3 (2004) 318-329
15. Eustace B.K., Buchstaller A., and Jay D.G. Adapting chromophore-assisted laser inactivation for high throughput functional proteomics. Brief. Funct. Genomic. Proteomic. 1 (2002) 257-265
16. Eustace B.K., Sakurai T., Stewart J.K., Yimlamai D., Unger C., Zehetmeier C., Lain B., Torella C., Henning S.W., Beste G., Scroggins B.T., Neckers L., et al. Functional proteomic screens reveal an essential extracellular role for hsp90 alpha in cancer cell invasiveness. Nat. Cell Biol. 6 (2004) 507-514
17. Feigenbaum J.J., Choubal M.D., Crumrine D.S., and Kanofsky J.R. Receptor inactivation by dye-neuropeptide conjugates. 2. Characterization of the quantum yield of singlet oxygen generated by irradiation of dye-neuropeptide conjugates. Peptides 17 (1996) 1213-1217
18. Graner E., Mercadante A.F., Zanata S.M., Martins V.R., Jay D.G., and Brentani R.R. Laminin-induced PC-12 cell differentiation is inhibited following laser inactivation of cellular prion protein. FEBS Lett. 482 (2000) 257-260
19. Grate D., and Wilson C. Laser-mediated, site-specific inactivation of RNA transcripts. Proc. Natl. Acad. Sci. USA 96 (1999) 6131-6136
20. Griffin B.A., Adams S.R., and Tsien R.Y. Specific covalent labeling of recombinant protein molecules inside live cells. Science 281 (1998) 269-272
21. Guo J., Chen H., Puhl III H.L., and Ikeda S.R. Fluorophore-assisted light inactivation produces both targeted and collateral effects on N-type calcium channel modulation in rat sympathetic neurons. J. Physiol. 576 (2006) 477-492
22. Halliwell B., and Gutteridge J.M. Role of free radicals and catalytic metal ions in human disease: An overview. Methods Enzymol. 186 (1990) 1-85
23. Hauptschein R.S., Sloan K.E., Torella C., Moezzifard R., Giel-Moloney M., Zehetmeier C., Unger C., Ilag L.L., and Jay D.G. Functional proteomic screen identifies a modulating role for CD44 in death receptor-mediated apoptosis. Cancer Res. 65 (2005) 1887-1896
24. Hoffman-Kim D., Kerner J.A., Chen A., Xu A., Wang T.F., and Jay D.G. pp60(c-src) is a negative regulator of laminin-1-mediated neurite outgrowth in chick sensory neurons. Mol. Cell. Neurosci. 21 (2002) 81-93
25. Huh W.K., Falvo J.V., Gerke L.C., Caroll A.S., Howson R.W., Weissman J.S., and O'Shea E.K. Global analysis of protein focalization in budding yeast. Nature 425 (2003) 686-691
26. Inoue T., Kikuchi K., Hirose K., Iino M., and Nagano T. Small molecule-based laser inactivation of inositol 1,4,5-trisphosphate receptor. Chem. Biol. 8 (2001) 9-15
27. Jay D.G. Selective destruction of protein function by chromophore-assisted laser inactivation. Proc. Natl. Acad. Sci. USA 85 (1988) 5454-5458
28. Jay D.G. The clutch hypothesis revisited: Ascribing the roles of actin-associated proteins in filopodial protrusion in the nerve growth cone. J. Neurobiol. 44 (2000) 114-125
29. Jay D.G., and Keshishian H. Laser inactivation of fasciclin I disrupts axon adhesion of grasshopper pioneer neurons. Nature 348 (1990) 548-550
30. Kiger A., Baum B., Jones S., Jones M., Coulson A., Echeverri C., and Perrimon N. A functional genomic analysis of cell morphology using RNA interference. J. Biol. 2 (2003) 27
31. Lamb R.F., Ozanne B.W., Roy C., McGarry L., Stipp C., Mangeat P., and Jay D.G. Essential functions of ezrin in maintenance of cell shape and lamellipodial extension in normal and transformed fibroblasts. Curr. Biol. 7 (1997) 682-688
32. Lamb R.F., Roy C., Diefenbach T.J., Vinters H.V., Johnson M.W., Jay D.G., and Hall A. The TSC1 tumour suppressor hamartin regulates cell adhesion through ERM proteins and the GTPase Rho. Nat. Cell Biol. 2 (2000) 281-287
33. Lee S.S., Lee R.Y., Fraser A.G., Kamath R.S., Ahringer J., and Ruvkun G. A systematic RNAi screen identifies a critical role for mitochondria in C. elegans longevity. Nat. Genet. 33 (2003) 40-48
34. Li J., Steen H., and Gygi S.P. Protein profiling with cleavable isotope-coded affinity tag (cICAT) reagents: The yeast salinity stress response. Mol. Cell Proteomics 2 (2003) 1198-1204
35. Li S., Armstrong C.M., Bertin N., Ge H., Milstein S., Boxem M., Vidalain P.O., Han J.D., Chesneau A., Hao T., Goldberg D.S., Li N., et al. A map of the interactome network of the metazoan C. elegans. Science 303 (2004) 540-543
36. Liao J.C., Berg L.J., and Jay D.G. Chromophore-assisted laser inactivation of subunits of the T-cell receptor in living cells is spatially restricted. Photochem. Photobiol. 62 (1995) 923-929
37. Linden K.G., Liao J.C., and Jay D.G. Spatial specificity of chromophore assisted laser inactivation of protein function. Biophys. J. 61 (1992) 956-962
38. Liu C.W., Lee G., and Jay D.G. Tau is required for neurite outgrowth and growth cone motility of chick sensory neurons. Cell Motil. Cytoskeleton 43 (1999) 232-242
39. Mack T.G., Koester M.P., and Pollerberg G.E. The microtubule-associated protein MAP1B is involved in local stabilization of turning growth cones. Mol. Cell. Neurosci. 15 (2000) 51-65
40. Marek K.W., and Davis G.W. Transgenically encoded protein photoinactivation (FlAsH-FALI): Acute inactivation of synaptotagmin I. Neuron 36 (2002) 805-813
41. Muller B.K., Jay D.G., and Bonhoeffer F. Chromophore-assisted laser inactivation of a repulsive axonal guidance molecule. Curr. Biol. 6 (1996) 1497-1502
42. Rajfur Z., Roy P., Otey C., Romer L., and Jacobson K. Dissecting the link between stress fibres and focal adhesions by CALI with EGFP fusion proteins. Nat. Cell Biol. 4 (2002) 286-293
43. Rubenwolf S., Niewohner J., Meyer E., Petit-Frere C., Rudert F., Hoffmann P.R., and Ilag L.L. Functional proteomics using chromophore-assisted laser inactivation. Proteomics 2 (2002) 241-246
44. Sakurai T., Wong E., Drescher U., Tanaka H., and Jay D.G. Ephrin-A5 restricts topographically specific arborization in the chick retinotectal projection in vivo. Proc. Natl. Acad. Sci. USA 99 (2002) 10795-10800
45. Schmucker D., Su A.L., Beermann A., Jackle H., and Jay D.G. Chromophore-assisted laser inactivation of patched protein switches cell fate in the larval visual system of Drosophila. Proc. Natl. Acad. Sci. USA 91 (1994) 2664-2668
46. Schroeder R., Jay D.G., and Tautz D. Elimination of EVE protein by CALI in the short germ band insect Tribolium suggests a conserved pair-rule function for even skipped. Mech. Dev. 80 (1999) 191-195
47. Schroeder R., Tautz D., and Jay D.G. Chromophore-assisted laser inactivation of even skipped in Drosophila phenocopies genetic loss of function. Dev. Genes Evol. 206 (1996) 86-88
48. Silva J.M., Mizuno H., Brady A., Lucito R., and Hannon G.J. RNA interference microarrays: High-throughput loss-of-function genetics in mammalian cells. Proc. Natl. Acad. Sci. USA 101 (2004) 6548-6552
49. Sloan K.E., Eustace B.K., Stewart J.K., Zehetmeier C., Torella C., Simeone M., Roy J.E., Unger C., Louis D.N., Ilag L.L., and Jay D.G. CD155/OVR plays a key role in cell motility during tumor cell invasion and migration. BMC Cancer 4 (2004) 73
50. Sloan K.E., Stewart J.K., Treloar A.F., Matthews R.T., and Jay D.G. CD155/PVR enhances glioma cell dispersal by regulating adhesion signaling and focal adhesion dynamics. Cancer Res. 65 (2005) 10930-10937
51. Surrey T., Elowitz M.B., Wolf P.E., Yang F., Nedelec F., Shokat K., and Leibler S. Chromophore-assisted light inactivation and self-organization of microtubules and motors. Proc. Natl. Acad. Sci. USA 95 (1998) 4293-4298
52. Sydor A.M., Su A.L., Wang F.S., Xu A., and Jay D.G. Talin and vinculin play distinct roles in filopodial motility in the neuronal growth cone. J. Cell Biol. 134 (1996) 1197-1207
53. Takei K., Chan T.A., Wang F.S., Deng Y., Rutishauser U., and Jay D.G. The neural cell adhesion molecules L1 and NCAM-180 act in different steps of neurite outgrowth. J. Neurosci. 19 (1999) 9469-9479
54. Takei K., Shin R.M., Inoue T., Kato K., and Mikoshiba K. Regulation of nerve growth mediated by inositol 1,4,5-trisphosphate receptors in growth cones. Science 282 (1998) 1705-1708
55. Templin M.F., Stoll D., Schwenk J.M., Potz O., Kramer S., and Joos T.O. Protein microarrays: Promising tools for proteomic research. Proteomics 3 (2003) 2155-2166
56. Tour O., Meijer R.M., Zacharias D.A., Adams S.R., and Tsien R.Y. Genetically targeted chromophore-assisted light inactivation. Nat. Biotechnol. 21 (2003) 1505-1508
57. Wang F.S., Liu C.W., Diefenbach T.J., and Jay D.G. Modeling the role of myosin 1c in neuronal growth cone turning. Biophys. J. 85 (2003) 3319-3328
58. Wang F.S., Wolenski J.S., Cheney R.E., Mooseker M.S., and Jay D.G. Function of myosin-V in filopodial extension of neuronal growth cones. Science 273 (1996) 660-663
59. Wong E.V., David S., Jacob M.H., and Jay D.G. Inactivation of myelin-associated glycoprotein enhances optic nerve regeneration. J. Neurosci. 23 (2003) 3112-3117
60. Wong E.V., David S., Jacob M.H., and Jay D.G. Inactivation of myelin-associated glycoprotein enhances optic nerve regeneration. J. Neurosci. 23 (2003) 5391 [Erratum in
61. Yan P., Xiong Y., Chen B., Negash S., Squier T.C., and Mayer M.U. Fluorophore-assisted light inactivation of calmodulin involves singlet-oxygen mediated cross-linking and methionine oxidation. Biochemistry 45 (2006) 4736-4748
62. Yogo T., Kikuchi K., Inoue T., Hirose K., Iino M., and Nagano T. Modification of intracellular Ca2+ dynamics by laser inactivation of inositol 1,4,5-trisphosphate receptor using membrane-permeant probes. Chem. Biol. 11 (2004) 1053-1058