TDP-43 binds heterogeneous nuclear ribonucleoprotein A/B through its C-terminal tail: An important region for the inhibition of cystic fibrosis transmembrane conductance regulator exon 9 splicing

Journal of Biological Chemistry

Volumn 280, Issue 45, 2005, Pages 37572-37584

  Buratti, Emanuele ^a   Brindisi, Antonia ^a   Giombi, Maurizio ^a   Tisminetzky, Sergio ^a   Ayala, Youhna M ^a   Baralle, Francisco E ^a  

^a INTERNATIONAL CENTRE FOR GENETIC ENGINEERING AND BIOTECHNOLOGY   (Italy)

Author keywords

[No Author keywords available]

Indexed keywords

BIOCHEMISTRY; BIOLOGICAL MEMBRANES; ENZYME INHIBITION; MOLECULAR BIOLOGY;

CYSTIC FIBROSIS TRANSMEMBRANES; RIBONUCLEOPROTEIN; SPLICEOSOMAL ASSEMBLY; SPLICING INHIBITION;

PROTEINS;

NUCLEAR FACTOR; NUCLEAR PROTEIN; NUCLEAR RIBONUCLEOPROTEIN A; NUCLEAR RIBONUCLEOPROTEIN A1; NUCLEAR RIBONUCLEOPROTEIN A2; NUCLEAR RIBONUCLEOPROTEIN B; NUCLEAR RIBONUCLEOPROTEIN B1; PROTEIN TDP 43; RIBONUCLEOPROTEIN; TRANSMEMBRANE CONDUCTANCE REGULATOR; UNCLASSIFIED DRUG;

ARTICLE; CARBOXY TERMINAL SEQUENCE; COMPLEX FORMATION; CONTROLLED STUDY; EXON; GENE MUTATION; GENE SEQUENCE; GENETIC CONSERVATION; HUMAN; HUMAN CELL; MOLECULAR RECOGNITION; PRIORITY JOURNAL; PROTEIN ASSEMBLY; PROTEIN FAMILY; PROTEIN PROTEIN INTERACTION; RNA SPLICING; SPLICEOSOME;

ALTERNATIVE SPLICING; CYSTIC FIBROSIS TRANSMEMBRANE CONDUCTANCE REGULATOR; DNA-BINDING PROTEINS; EXONS; HELA CELLS; HETEROGENEOUS-NUCLEAR RIBONUCLEOPROTEIN GROUP A-B; HUMANS; MULTIGENE FAMILY; PROTEIN BINDING; RNA SPLICING;

EID: 27844514227     PISSN: 00219258     EISSN: None     Source Type: Journal    
DOI: 10.1074/jbc.M505557200     Document Type: Article

References (86)

1. Krainer, A. R. (1997) in Frontiers in Molecular Biology: Eukaryotic mRNA processing (Harnes, B. D., and Glover, D. M., eds) Oxford University Press, New York
2. Adams, M. D., Rudner, D. Z., and Rio, D. C. (1996) Curr. Opin. Cell Biol. 8, 331-339
3. Burge, C. B., Tuschl, T., and Sharp, P. A. (1999) in The RNA World (Gesteland, R. R., Cech, T. R., and Atkins, J. F., eds) 2nd Ed., pp. 525-560, Cold Spring Harbor Laboratory, Cold Spring Harbor, NY
4. Modrek, B., and Lee, C. J. (2003) Nat. Genet. 34, 177-180
5. Lareau, L. F., Green, R. E., Bhatnagar, R. S., and Brenner, S. E. (2004) Curr. Opin. Struct. Biol. 14, 273-282
6. Boue, S., Letunic, I., and Bork, P. (2003) BioEssays 25, 1031-1034
7. Pagani, F., and Baralle, F. E. (2004) Nat. Rev. Genet 5, 389-396
8. Faustino, N. A., and Cooper, T. A. (2003) Genes Dev. 17, 419-437
9. Caceres, J. F., and Kornblihtt, A. R. (2002) Trends Genet 18, 186-193
10. Cartegni, L., Chew, S. L., and Krainer, A. R. (2002) Nat. Rev. Genet 3, 285-298
11. Nissim-Rafinia, M., and Kerem, B. (2002) Trends Genet 18, 123-127
12. Garcia-Blanco, M. A., Baraniak, A. P., and Lasda, E. L. (2004) Nat. Biotechnol. 22, 535-546
13. Nilsen, T. W. (2003) BioEssays 25, 1147-1149
14. Zhou, Z., Licklider, L. J., Gygi, S. P., and Reed, R. (2002) Nature 419, 182-185
15. Buratti, E., and Baralle, F. E. (2004) Mol. Cell. Biol. 24, 10505-10514
16. Kornblihtt, A. R., De La Mata, M., Fededa, J. P., Munoz, M. J., and Nogues, G. (2004) RNA (N. Y.) 10, 1489-1498
17. Smith, C. W., and Valcarcel, J. (2000) Trends Biochem. Sci. 25, 381-388
18. Blencowe, B. J. (2000) Trends Biochem. Sci. 25, 106-110
19. Stamm, S. (2002) Hum. Mol. Genet. 11, 2409-2416
20. Shin, C., and Manley, J. L. (2004) Nat. Rev. Mol. Cell. Biol. 5, 727-738
21. Kreahling, J., and Graveley, B. R. (2004) Trends Genet 20, 1-4
22. Niksic, M., Romano, M., Buratti, E., Pagani, F., and Baralle, F. E. (1999) Hum. Mol. Genet. 8, 2339-2349
23. Buratti, E., Dork, T., Zuccato, E., Pagani, F., Romano, M., and Baralle, F. E. (2001) EMBO J. 20, 1774-1784
24. Buratti, E., Brindisi, A., Pagani, F., and Baralle, F. E. (2004) Am. J. Hum. Genet. 74, 1322-1325
25. Groman, J. D., Hefferon, T. W., Casals, T., Bassas, L., Estivill, X., Des Georges, M., Guittard, C., Koudova, M., Fallin, M. D., Nemeth, K., Fekete, G., Kadasi, L., Friedman, K., Schwarz, M., Bombieri, C., Pignatti, P. F., Kanavakis, E., Tzetis, M., Schwartz, M., Novelli, G., D'Apice, M. R., Sobczynska- Tomaszewska, A., Bal, J., Stuhrmann, M., Macek, M., Jr., Claustres, M., and Cutting, G. R. (2004) Am. J. Hum. Genet. 74, 176-179
26. Buratti, E., and Baralle, F. E. (2001) J. Biol. Chem. 276, 36337-36343
27. Ou, S. H., Wu, F., Harrich, D., Garcia-Martinez, L. F., and Gaynor, R. B. (1995) J. Virol. 69, 3584-3596
28. Ayala, Y. M., Pantano, S., D'Ambrogio, A., Buratti, E., Brindisi, A., Marchetti, C., Romano, M., and Baralle, F. E. (2005) J. Mol. Biol. 348, 575-588
29. Disset, A., Michot, C., Harris, A., Buratti, E., Claustres, M., and Tuffery-Giraud, S. (2005) Hum. Mutat. 25, 72-81
30. Hefferon, T. W., Groman, J. D., Yurk, C. E., and Cutting, G. R. (2004) Proc. Natl. Acad. Sci. U. S. A. 101, 3504-3509
31. Arrisi-Mercado, P., Romano, M., Muro, A. F., and Baralle, F. E. (2004) J. Biol. Chem. 279, 39331-39339
32. Gabellini, N. (2001) Eur. J. Biochem. 268, 1076-1083
33. Yeo, G., Hoon, S., Venkatesh, B., and Burge, C. B. (2004) Proc. Natl. Acad. Sci. U. S. A. 101, 15700-15705
34. Zhao, B., Schneid, C., Iliev, D., Schmidt, E. M., Wagner, V., Wollnik, F., and Mittag, M. (2004) Eukaryot. Cell 3, 815-825
35. Anyanful, A., Ono, K., Johnsen, R. C., Ly, H., Jensen, V., Baillie, D. L., and Ono, S. (2004) J. Cell Biol. 167, 639-647
36. Takahashi, N., Sasagawa, N., Suzuki, K., and Ishiura, S. (2000) Biochem. Biophys. Res. Commun. 277, 518-523
37. Faustino, N. A., and Cooper, T. A. (2005) Mol. Cell. Biol. 25, 879-887
38. Perez Canadillas, J. M., and Varani, G. (2003) EMBO J. 22, 2821-2830
39. Hui, J., Stangl, K., Lane, W. S., and Bindereif, A. (2003) Nat. Struct. Biol. 10, 33-37
40. Bilbao, D., and Valcarcel, J. (2003) Nat. Struct. Biol. 10, 6-7
41. Wang, H. Y., Wang, I. F., Bose, J., and Shen, C. K. (2004) Genomics 83, 130-139
42. Georgi, A. B., Stukenberg, P. T., and Kirschner, M. W. (2002) Curr. Biol. 12, 105-114
43. Wang, I. F., Reddy, N. M., and Shen, C. K. (2002) Proc. Natl. Acad. Sci. U. S.A. 99, 13583-13588
44. Brasier, A. R., Spratt, H., Wu, Z., Boldogh, I., Zhang, Y., Garofalo, R. P., Casola, A., Pashmi, J., Haag, A., Luxon, B., and Kurosky, A. (2004) J. Virol. 78, 11461-11476
45. Buratti, E., Muro, A. F., Giombi, M., Gherbassi, D., Iaconcig, A., and Baralle, F. E. (2004) Mol. Cell. Biol. 24, 1387-1400
46. Zuker, M. (2003) Nucleic Acids Res. 31, 3406-3415
47. Vandenbroucke, I., Callens, T., De Paepe, A., and Messiaen, L. (2002) BMC Genomics http://www.biomedcentral.eom/1471-2164/3/13
48. Krecic, A. M., and Swanson, M. S. (1999) Curr. Opin. Cell Biol. 11, 363-371
49. Huang, M., Rech, J. E., Northington, S. J., Flicker, P. F., Mayeda, A., Krainer, A. R., and LeStourgeon, W. M. (1994) Mol. Cell. Biol. 14, 518-533
50. Ma, A. S., Moran-Jones, K., Shan, J., Munro, T. P., Snee, M. J., Hoek, K. S., and Smith, R. (2002) J. Biol. Chem. 277, 18010-18020
51. Chabot, B., LeBel, C., Hutchison, S., Nasim, F. H., and Simard, M. J. (2003) in Progress in Molecular and Subcellular Biology: Regulation of Alternative Splicing (Jeanteur, P., ed) Vol. 31, pp. 59-82, Springer-Verlag New York Inc., New York
52. Burd, C. G., and Dreyfuss, G. (1994) EMBO J. 13, 1197-1204
53. Gorlach, M., Burd, C. G., and Dreyfuss, G. (1994) J. Biol. Chem. 269, 23074-23078
54. Swanson, M. S., and Dreyfuss, G. (1988) Mol. Cell. Biol. 8, 2237-2241
55. Hutchison, S., LeBel, C., Blanchette, M., and Chabot, B. (2002) J. Biol. Chem. 277, 29745-29752
56. Niedziela-Majka, A., Rymarczyk, G., Kochman, M., and Ozyhar, A. (1998) Protein Expression Purif. 14, 208-220
57. Zheng, Z. M. (2004) J. Biomed. Sci. 11, 278-294
58. Graveley, B. R. (2000) RNA (N. Y.) 6, 1197-1211
59. Bourgeois, C. F., Lejeune, F., and Stevenin, J. (2004) Prog. Nucleic Acid Res. Mol. Biol. 78, 37-88
60. Ibrahim, E. C., Schaal, T. D., Hertel, K. J., Reed, R., and Maniatis, T. (2005) Proc. Natl. Acad. Sci. U. S. A. 102, 5002-5007
61. Shen, H., and Green, M. R. (2004) Mol. Cell 16, 363-373
62. Shen, H., Kan, J. L., and Green, M. R. (2004) Mol. Cell 13, 367-376
63. Mayeda, A., Munroe, S. H., Caceres, J. F., and Krainer, A. R. (1994) EMBO J. 13, 5483-5495
64. Wagner, E. J., and Garcia-Blanco, M. A. (2001) Mol. Cell. Biol. 21, 3281-3288
65. Caceres, J. F., Stamm, S., Helfman, D. M., and Krainer, A. R. (1994) Science 265, 1706-1709
66. Zhu, J., Mayeda, A., and Krainer, A. R. (2001) Mol. Cell 8, 1351-1361
67. Reed, R. (2000) Curr. Opin. Cell Biol. 12, 340-345
68. Ladd, A. N., Charlet, N., and Cooper, T. A. (2001) Mol. Cell. Biol. 21, 1285-1296
69. Dickinson, L. A., Edgar, A. J., Ehley, J., and Gottesfeld, J. M. (2002) J. Biol. Chem. 277, 25465-25473
70. Adams, D. J., van der Weyden, L., Mayeda, A., Stamm, S., Morris, B. J., and Rasko, J. E. (2001) J. Cell Biol. 154, 25-32
71. Stickeler, E., Fraser, S. D., Honig, A., Chen, A. L., Berget, S. M., and Cooper, T. A. (2001) EMBO J. 20, 3821-3830
72. Zuccato, E., Buratti, E., Stuani, C., Baralle, F. E., and Pagani, F. (2004) J. Biol. Chem. 279, 16980-16988
73. Tacke, R., Tohyama, M., Ogawa, S., and Manley, J. L. (1998) Cell 93, 139-148
74. Buratti, E., Baralle, M., De Conti, L., Baralle, D., Romano, M., Ayala, Y. M., and Baralle, F. E. (2004) Nucleic Acids Res. 32, 4224-4236
75. Jensen, K. B., Dredge, B. K., Stefani, G., Zhong, R., Buckanovich, R. J., Okano, H. J., Yang, Y. Y., and Darnell, R. B. (2000) Neuron 25, 359-371
76. Forch, P., Puig, O., Kedersha, N., Martinez, C., Granneman, S., Seraphin, B., Anderson, P., and Valcarcel, J. (2000) Mol. Cell 6, 1089-1098
77. Hahm, B., Cho, O. H., Kim, J. E., Kim, Y. K., Kim, J. H., Oh, Y. L., and Jang, S. K. (1998) FEBS Lett. 425, 401-406
78. Raffetseder, U., Frye, B., Rauen, T., Jurchott, K., Royer, H. D., Jansen, P. L., and Mertens, P. R. (2003) J. Biol. Chem. 278, 18241-18248
79. Caputi, M., Mayeda, A., Krainer, A. R., and Zahler, A. M. (1999) EMBO J. 18, 4060-4067
80. Nasim, F. U., Hutchison, S., Cordeau, M., and Chabot, B. (2002) RNA (N. Y.) 8, 1078-1089
81. Del Gatto-Konczak, F., Olive, M., Gesnel, M. C., and Breathnach, R. (1999) Mol. Cell. Biol. 19, 251-260
82. Nissim-Rafinia, M., Chiba-Falek, O., Sharon, G., Boss, A., and Kerem, B. (2000) Hum. Mol. Genet. 9, 1771-1778
83. Gregory, R. I., Yan, K. P., Amuthan, G., Chendrimada, T., Doratotaj, B., Cooch, N., and Shiekhattar, R. (2004) Nature 432, 235-240
84. Tange,T. O., Damgaard, C. K., Guth, S., Valcarcel, J., and Kjems, J. (2001) EMBO J. 20, 5748-5758
85. Eperon, I. C., Makarova, O. V., Mayeda, A., Munroe, S. H., Caceres, J. F., Hayward, D. G., and Krainer, A. R. (2000) Mol. Cell. Biol. 20, 8303-8318
86. Domsic, J. K., Wang, Y., Mayeda, A., Krainer, A. R., and Stoltzfus, C. M. (2003) Mol. Cell. Biol. 23, 8762-8772