Characterization and Functional Implications of the RNA Binding Properties of Nuclear Factor TDP-43, a Novel Splicing Regulator of CFTR Exon 9

Journal of Biological Chemistry

Volumn 276, Issue 39, 2001, Pages 36337-36343

  Buratti, Emanuele ^a   Baralle, Francisco E ^a  

^a NONE

Author keywords

[No Author keywords available]

Indexed keywords

DISEASES; DNA; GENES; PROTEINS;

NUCLEAR FACTOR;

RNA;

DINUCLEOTIDE; MESSENGER RNA; NUCLEAR FACTOR; NUCLEAR FACTOR TDP 43; PHENYLALANINE; TRANSMEMBRANE CONDUCTANCE REGULATOR; UNCLASSIFIED DRUG; CFTR PROTEIN, HUMAN; DNA; DNA BINDING PROTEIN; GLUTATHIONE TRANSFERASE; HYBRID PROTEIN; NUCLEIC ACID; OLIGONUCLEOTIDE; PROTEIN TDP 43; PROTEIN TDP-43; RECOMBINANT PROTEIN; RNA;

ARTICLE; BINDING AFFINITY; DNA BINDING; EXON; GENETIC POLYMORPHISM; MOLECULAR RECOGNITION; NONHUMAN; PRIORITY JOURNAL; PROTEIN RNA BINDING; RNA SPLICING; ALTERNATIVE RNA SPLICING; AMINO ACID SEQUENCE; BINDING COMPETITION; CELL NUCLEUS; CHEMISTRY; GENE DELETION; GENETICS; HUMAN; METABOLISM; MOLECULAR GENETICS; MUTATION; PLASMID; PROTEIN BINDING; PROTEIN MOTIF; PROTEIN TERTIARY STRUCTURE; SEQUENCE HOMOLOGY; ULTRAVIOLET RADIATION;

ALTERNATIVE SPLICING; AMINO ACID MOTIFS; AMINO ACID SEQUENCE; BINDING, COMPETITIVE; CELL NUCLEUS; CYSTIC FIBROSIS TRANSMEMBRANE CONDUCTANCE REGULATOR; DNA; DNA-BINDING PROTEINS; EXONS; GENE DELETION; GLUTATHIONE TRANSFERASE; HUMANS; MOLECULAR SEQUENCE DATA; MUTATION; NUCLEIC ACIDS; OLIGONUCLEOTIDES; PHENYLALANINE; PLASMIDS; POLYMORPHISM, GENETIC; PROTEIN BINDING; PROTEIN STRUCTURE, TERTIARY; RECOMBINANT FUSION PROTEINS; RECOMBINANT PROTEINS; RNA; RNA, MESSENGER; SEQUENCE HOMOLOGY, AMINO ACID; ULTRAVIOLET RAYS;

EID: 0035965309     PISSN: 00219258     EISSN: None     Source Type: Journal    
DOI: 10.1074/jbc.M104236200     Document Type: Article

References (49)

1. Buratti, E., Dork, T., Zuccato, E., Pagani, F., Romano, M., and Baralle, F. E. (2001) EMBO J. 20, 1774-1784
2. Niksic, M., Romano, M., Buratti, E., Pagani, F., and Baralle, F. E. (1999) Hum. Mol. Genet. 8, 2339-2349
3. Pagani, F., Buratti, E., Stuani, C., Romano, M., Zuccato, E., Niksic, M., Giglio, L., Faraguna, D., and Baralle, F. E. (2000) J. Biol. Chem. 275, 21041-21047
4. Strong, T. V., Wilkinson, D. J., Mansoura, M. K., Devor, D. C., Henze, K., Yang, Y., Wilson, J. M., Cohn, J. A., Dawson, D. C., Frizzell, R. A., and Collins, F. S. (1993) Hum. Mol. Genet. 2, 225-230
5. Delaney, S. J., Rich, D. P., Thomson, S. A., Hargrave, M. R., Lovelock, P. K., Welsh, M. J., and Wainwright, B. J. (1993) Nat. Genet. 4, 426-431
6. Chillon, M., Casals, T., Mercier, B., Bassas, L., Lissens, W., Silber, S., Romey, M. C., Ruiz-Romero, J., Verlingue, C., Claustres, M., Nunes, V., Férec, C., and Estiril, X. (1995) N. Engl. J. Med. 332, 1475-1480
7. Chu, C. S., Trapnell, B. C., Curristin, S., Cutting, G. R., and Crystal, R. G. (1993) Nat. Genet. 3, 151-156
8. Cuppens, H., Lin, W., Jaspers, M., Costes, B., Teng, H., Vankeerberghen, A., Jorissen, M., Droogmans, G., Reynaert, I., Goossens, M., Nilius, B., and Cassiman, J. J. (1998) J. Clin. Invest. 101, 487-496
9. Rave-Harel, N., Kerem, E., Nissim-Rafinia, M., Madjar, I., Goshen, R., Augarten, A., Rahat, A., Hurwitz, A., Darvasi, A., and Kerem, B. (1997) Am. J. Hum. Genet. 60, 87-94
10. Shelley, C. S., and Baralle, F. E. (1987) Nucleic Acids Res. 15, 3787-3799
11. Gabellini, N. (2001) Eur. J. Biochem. 268, 1076-1083
12. Kazazian, H. H., Jr., and Moran, J. V. (1998) Nat. Genet. 19, 19-24
13. Rozmahel, R., Heng, H. H., Duncan, A. M., Shi, X. M., Rommens, J. M., and Tsui, L. C. (1997) Genomics 45, 554-561
14. Burd, C. G., and Dreyfuss, G. (1994) Science 265, 615-621
15. Mattaj, I. W. (1993) Cell 73, 837-840
16. Biamonti, G., and Riva, S. (1994) FEBS Lett. 340, 1-8
17. Birney, E., Kumar, S., and Krainer, A. R. (1993) Nucleic Acids Res. 21, 5803-5816
18. Nagai, K., Oubridge, C., Ito, N., Avis, J., and Evans, P. (1995) Trends Biochem. Sci 20, 235-240
19. Ou, S. H., Wu, F., Harrich, D., Garcia-Martinez, L. F., and Gaynor, R. B. (1995) J. Virol. 69, 3584-3596
20. Takahashi, N., Sasagawa, N., Suzuki, K., and Ishiura, S. (2000) Biochem. Biophys. Res. Commun. 277, 518-523
21. Johnston, S. D., Lew, J. E., and Berman, J. (1999) Mol. Cell. Biol. 19, 923-933
22. Shamoo, Y., Krueger, U., Rice, L. M., Williams, K. R., and Steitz, T. A. (1997) Nat. Struct. Biol. 4, 215-222
23. Handa, N., Nureki, O., Kurimoto, K., Kim, I., Sakamoto, H., Shimura, Y., Muto, Y., and Yokoyama, S. (1999) Nature 398, 579-585
24. Deo, R. C., Bonanno, J. B., Sonenberg, N., and Burley, S. K. (1999) Cell 98, 835-845
25. Oubridge, C., Ito, N., Evans, P. R., Teo, C. H., and Nagai, K. (1994) Nature 372, 432-438
26. Merrill, B. M., Stone, K. L., Cobianchi, F., Wilson, S. H., and Williams, K. R. (1988) J. Biol. Chem. 263, 3307-3313
27. Jessen, T. H., Oubridge, C., Teo, C. H., Pritchard, C., and Nagai, K. (1991) EMBO J. 10, 3447-3456
28. Hoffman, D. W., Query, C. C., Golden, B. L., White, S. W., and Keene, J. D. (1991) Proc. Natl. Acad. Sci. U. S. A. 88, 2495-2499
29. Serin, G., Joseph, G., Ghisolfi, L., Bauzan, M., Erard, M., Amalric, F., and Bouvet, P. (1997) J. Biol. Chem. 272, 13109-13116
30. Sutherland, G. R., and Richards, R. I. (1995) Proc. Natl. Acad. Sci. U. S. A. 92, 3636-3641
31. International Human Genome Sequencing Consortium. (2001) Nature 409, 860-920
32. Csink, A. K., and Henikoff, S. (1998) Trends Genet. 14, 200-204
33. Redman, J. B., Fenwick, R. G., Jr., Fu, Y. H., Pizzuti, A., and Caskey, C. T. (1993) J. Am. Med. Assoc. 269, 1960-1965
34. Yu, S., Pritchard, M., Kremer, E., Lynch, M., Nancarrow, J., Baker, E., Holman, K., Mulley, J. C., Warren, S. T., Schlessinger, D., Sutherland, G. R., and Richards, R. I. (1991) Science 252, 1179-1181
35. Oberle, I., Rousseau, F., Heitz, D., Kretz, C., Devys, D., Hanauer, A., Boue, J., Bertheas, M. F., and Mandel, J. L. (1991) Science 252, 1097-1102
36. The Huntington's Disease Collaborative Research Group. (1993) Cell 72, 971-983
37. La Spada, A. R., Wilson, E. M., Lubahn, D. B., Harding, A. E., and Fischbeck, K. H. (1991) Nature 352, 77-79
38. Kajita, Y., Nakayama, J., Aizawa, M., and Ishikawa, F. (1995) J. Biol. Chem. 270, 22167-22175
39. Kamada, S., and Miwa, T. (1992) Gene (Amst.) 119, 229-236
40. Lukacsovich, T., Asztalos, Z., Juni, N., Awano, W., and Yamamoto, D. (1999) Genomics 57, 43-56
41. Wilson, S. M., Datar, K. V., Paddy, M. R., Swedlow, J. R., and Swanson, M. S. (1994) J. Cell Biol. 127, 1173-1184
42. Anderson, J. T., Wilson, S. M., Datar, K. V., and Swanson, M. S. (1993) Mol. Cell. Biol. 13, 2730-2741
43. Lee, W. C., Xue, Z. X., and Melese, T. (1991) J. Cell Biol. 113, 1-12
44. Lin, J. J., and Zakian, V. A. (1994) Nucleic Acids Res. 22, 4906-4913
45. Gendrel, C. G., Boulet, A., and Dutreix, M. (2000) Genes Dev. 14, 1261-1268
46. Majewski, J., and Ott, J. (2000) Genome Res. 10, 1108-1114
47. Buvoli, M., Cobianchi, F., Biamonti, G., and Riva, S. (1990) Nucleic Acids Res. 18, 6595-6600
48. Abdul-Manan, N., and Williams, K. R. (1996) Nucleic Acids Res. 24, 4063-4070
49. Dallaire, F., Dupuis, S., Fiset, S., and Chabot, B. (2000) J. Biol. Chem, 275, 14509-14516