-
1
-
-
0032963409
-
Wide distribution and diversity of members of the bacterial kingdom Acidobacterium in the environment
-
Barns, W., Takala, S.L., and Kuske, C.R. (1999) Wide distribution and diversity of members of the bacterial kingdom Acidobacterium in the environment. Appl Environ Microbiol 65: 1731-1737.
-
(1999)
Appl Environ Microbiol
, vol.65
, pp. 1731-1737
-
-
Barns, W.1
Takala, S.L.2
Kuske, C.R.3
-
2
-
-
0034554741
-
Construction and analysis of bacterial artificial chromosome libraries from a marine microbial assemblage
-
Béjà, O., Suzuki, M.T., Koonin, E.V., Aravind, L., Hadd, A., Nguyen, L.P., et al. (2000a) Construction and analysis of bacterial artificial chromosome libraries from a marine microbial assemblage. Environ Microbiol 2: 516-529.
-
(2000)
Environ Microbiol
, vol.2
, pp. 516-529
-
-
Béjà, O.1
Suzuki, M.T.2
Koonin, E.V.3
Aravind, L.4
Hadd, A.5
Nguyen, L.P.6
-
3
-
-
0034665853
-
Bacterial rhodopsin: Evidence for a new type of phototrophy in the sea
-
Béjà, O., Aravind, L., Koonin, E.V., Suzuki, M.T., Hadd, A., Nguyen, L.P., et al. (2000b) Bacterial rhodopsin: evidence for a new type of phototrophy in the sea. Science 289: 1902-1906.
-
(2000)
Science
, vol.289
, pp. 1902-1906
-
-
Béjà, O.1
Aravind, L.2
Koonin, E.V.3
Suzuki, M.T.4
Hadd, A.5
Nguyen, L.P.6
-
4
-
-
0035859080
-
Proteorhodopsin phototrophy in the ocean
-
Béjà, O., Spudich, E.N., Spudich, J.L., Leclerc, M., and DeLong, E.F. (2001) Proteorhodopsin phototrophy in the ocean. Nature 411: 786-789.
-
(2001)
Nature
, vol.411
, pp. 786-789
-
-
Béjà, O.1
Spudich, E.N.2
Spudich, J.L.3
Leclerc, M.4
DeLong, E.F.5
-
5
-
-
0037033979
-
Unsuspected diversity among marine aerobic anoxygenic phototrophs
-
Béjà, O., Suzuki, M.T., Heidelberg, J.F., Nelson, W.C., Preston, C.M., Hamada, T., et al. (2002a) Unsuspected diversity among marine aerobic anoxygenic phototrophs. Nature 415: 630-633.
-
(2002)
Nature
, vol.415
, pp. 630-633
-
-
Béjà, O.1
Suzuki, M.T.2
Heidelberg, J.F.3
Nelson, W.C.4
Preston, C.M.5
Hamada, T.6
-
6
-
-
0036135990
-
Comparative genomic analysis of archaeal genotypic variants in a single population and in two different oceanic provinces
-
Béjà, O., Koonin, E.V., Aravind, L., Taylor, L.T., Seitz, H., Stein, J.L., et al. (2002b) Comparative genomic analysis of archaeal genotypic variants in a single population and in two different oceanic provinces. Appl Environ Microbiol 68: 335-345.
-
(2002)
Appl Environ Microbiol
, vol.68
, pp. 335-345
-
-
Béjà, O.1
Koonin, E.V.2
Aravind, L.3
Taylor, L.T.4
Seitz, H.5
Stein, J.L.6
-
7
-
-
0031013145
-
Molecular phylogeny of Archaea from soil
-
Bintrim, S.B., Donohue, T.J., Handelsman, J., Roberts, G.P., and Goodman, R.M. (1997) Molecular phylogeny of Archaea from soil. Proc Natl Acad Sci USA 94: 277-282.
-
(1997)
Proc Natl Acad Sci USA
, vol.94
, pp. 277-282
-
-
Bintrim, S.B.1
Donohue, T.J.2
Handelsman, J.3
Roberts, G.P.4
Goodman, R.M.5
-
8
-
-
0030011823
-
Molecular microbial diversity of an agricultural soil in Wisconsin
-
Borneman, J., Skroch, P.W., O'Sullivan, K.M., Palus, J.A., Rumjanek, N.G., Jansen, J.L., Nienhuis, J., and Triplett, E.W. (1996) Molecular microbial diversity of an agricultural soil in Wisconsin. Appl Environ Microbiol 62: 1935-1943.
-
(1996)
Appl Environ Microbiol
, vol.62
, pp. 1935-1943
-
-
Borneman, J.1
Skroch, P.W.2
O'Sullivan, K.M.3
Palus, J.A.4
Rumjanek, N.G.5
Jansen, J.L.6
Nienhuis, J.7
Triplett, E.W.8
-
9
-
-
0035963668
-
Cloning and heterologous expression of a natural product biosynthetic gene cluster from eDNA
-
Brady, S.F., Chao, C.J., Handelsman, J., and Clardy, J. (2001) Cloning and heterologous expression of a natural product biosynthetic gene cluster from eDNA. Org Lett 3: 1981-1984.
-
(2001)
Org Lett
, vol.3
, pp. 1981-1984
-
-
Brady, S.F.1
Chao, C.J.2
Handelsman, J.3
Clardy, J.4
-
10
-
-
0031733317
-
Phylogenetic analysis of nonthermophilic members of the kingdom crenarchaeota and their diversity and abundance in soils
-
Buckley, D.H., Graber, J.R., and Schmidt, T.M. (1998) Phylogenetic analysis of nonthermophilic members of the kingdom crenarchaeota and their diversity and abundance in soils. Appl Environ Microbiol 84: 4333-4339.
-
(1998)
Appl Environ Microbiol
, vol.84
, pp. 4333-4339
-
-
Buckley, D.H.1
Graber, J.R.2
Schmidt, T.M.3
-
11
-
-
0034964968
-
The diversity of archaea and bacteria in association with the roots of zea mays L.
-
Chelius, M.K., and Triplett, E.W. (2001) The Diversity of Archaea and Bacteria in Association with the Roots of Zea mays L. Microb Ecol 41: 252-263.
-
(2001)
Microb Ecol
, vol.41
, pp. 252-263
-
-
Chelius, M.K.1
Triplett, E.W.2
-
12
-
-
0026755238
-
Archaea in coastal marine environments
-
DeLong, E.F. (1992) Archaea in coastal marine environments. Proc Nail Acad Sci USA 89: 5685-5689.
-
(1992)
Proc Nail Acad Sci USA
, vol.89
, pp. 5685-5689
-
-
DeLong, E.F.1
-
13
-
-
0031769609
-
Everything in moderation: Archaea as 'non-extremophiles'
-
DeLong, E.F. (1998) Everything in moderation: archaea as 'non-extremophiles'. Curr Opin Genet Dev 8: 649-654.
-
(1998)
Curr Opin Genet Dev
, vol.8
, pp. 649-654
-
-
DeLong, E.F.1
-
14
-
-
0034982036
-
Microbial seascapes revisited
-
DeLong, E.F. (2001) Microbial seascapes revisited. Curr Opin Microbiol 4: 290-295.
-
(2001)
Curr Opin Microbiol
, vol.4
, pp. 290-295
-
-
DeLong, E.F.1
-
15
-
-
0033709164
-
Genetic diversity of carbofuran-degrading soil bacteria
-
Desaint, S., Hartmann, A., Parekh, N.R., and Fournier, J. (2000) Genetic diversity of carbofuran-degrading soil bacteria. FEMS Microb Ecol 34: 173-180.
-
(2000)
FEMS Microb Ecol
, vol.34
, pp. 173-180
-
-
Desaint, S.1
Hartmann, A.2
Parekh, N.R.3
Fournier, J.4
-
16
-
-
0034879576
-
Methanotrophic diversity in an agricultural soil as evaluated by denaturing gradient gel electrophoresis profiles of pmoA, mxaF and 16S rDNA sequences
-
Fjellbirkeland, A., Torsvik, V., and Ovreas, L. (2001) Methanotrophic diversity in an agricultural soil as evaluated by denaturing gradient gel electrophoresis profiles of pmoA, mxaF and 16S rDNA sequences. Ant V Leeuwenh 79: 209-217.
-
(2001)
Ant V Leeuwenh
, vol.79
, pp. 209-217
-
-
Fjellbirkeland, A.1
Torsvik, V.2
Ovreas, L.3
-
17
-
-
0026525546
-
Novel major archaebacterial group from marine plankton
-
Fuhrman, J.A., McCallum, K., and Davis, A.A. (1992) Novel major archaebacterial group from marine plankton. Nature 356: 148-149.
-
(1992)
Nature
, vol.356
, pp. 148-149
-
-
Fuhrman, J.A.1
McCallum, K.2
Davis, A.A.3
-
18
-
-
0029828166
-
Fully automated genome analysis that reflects user needs and preferences. A detailed introduction to the MAGPIE system architecture
-
Gaasterland, T., and Sensen, C.W. (1996) Fully automated genome analysis that reflects user needs and preferences. A detailed introduction to the MAGPIE system architecture. Biochimie 78: 302-310.
-
(1996)
Biochimie
, vol.78
, pp. 302-310
-
-
Gaasterland, T.1
Sensen, C.W.2
-
19
-
-
0034724342
-
An archaeal genomic signature
-
Graham, D.E., Overbeek, R., Olsen, G.J., and Woese, C.R. (2000) An archaeal genomic signature. Proc Natl Acad Sci USA 97: 3304-3308.
-
(2000)
Proc Natl Acad Sci USA
, vol.97
, pp. 3304-3308
-
-
Graham, D.E.1
Overbeek, R.2
Olsen, G.J.3
Woese, C.R.4
-
20
-
-
0023970276
-
Regulation of the fixA gene and fixBC operon in Bradyrhizobium japonicum
-
Gubler, M., and Hennecke, H. (1988) Regulation of the fixA gene and fixBC operon in Bradyrhizobium japonicum. J Bacteriol 170: 1205-1214.
-
(1988)
J Bacteriol
, vol.170
, pp. 1205-1214
-
-
Gubler, M.1
Hennecke, H.2
-
21
-
-
16144362010
-
Wide diversity of Crenarchaeota
-
Hershberger, K.L., Barns, S.M., Reysenbach, A.L., Dawson, S.C., and Pace, N.R. (1996) Wide diversity of Crenarchaeota. Nature 384: 420.
-
(1996)
Nature
, vol.384
, pp. 420
-
-
Hershberger, K.L.1
Barns, S.M.2
Reysenbach, A.L.3
Dawson, S.C.4
Pace, N.R.5
-
22
-
-
0031662188
-
Impact of culture-independent studies on the emerging phylogenetic view of bacterial diversity
-
Hugenholtz, P., Goebel, B.M., and Pace, N.R. (1998) Impact of culture-independent studies on the emerging phylogenetic view of bacterial diversity. J Bacteriol 180: 4765-4774.
-
(1998)
J Bacteriol
, vol.180
, pp. 4765-4774
-
-
Hugenholtz, P.1
Goebel, B.M.2
Pace, N.R.3
-
23
-
-
0030894624
-
Novel group within the kingdom Crenarchaeota from boreal forest soil
-
Jurgens, G., Linström, K., and Saano, A. (1997) Novel group within the kingdom Crenarchaeota from boreal forest soil. Appl Environ Microbiol 63: 803-805.
-
(1997)
Appl Environ Microbiol
, vol.63
, pp. 803-805
-
-
Jurgens, G.1
Linström, K.2
Saano, A.3
-
24
-
-
0033771975
-
Identification of novel Archaea in bacterioplankton of a boreal forest lake by phylogenetic analysis and fluorescent in situ hybridization
-
Jurgens, G., Glöckner, F.-O., Amann, R., Saano, A., Montonen, L., Likolammi, M., and Münster, U. (2000) Identification of novel Archaea in bacterioplankton of a boreal forest lake by phylogenetic analysis and fluorescent in situ hybridization. FEMS Microbiol Ecol 34: 45-56.
-
(2000)
FEMS Microbiol Ecol
, vol.34
, pp. 45-56
-
-
Jurgens, G.1
Glöckner, F.-O.2
Amann, R.3
Saano, A.4
Montonen, L.5
Likolammi, M.6
Münster, U.7
-
25
-
-
0035945618
-
Archaeal dominance in the mesopelagic zone of the Pacific Ocean
-
Karner, M., DeLong, E.F., and Karl, D.M. (2001) Archaeal dominance in the mesopelagic zone of the Pacific Ocean. Nature 409: 507-510.
-
(2001)
Nature
, vol.409
, pp. 507-510
-
-
Karner, M.1
DeLong, E.F.2
Karl, D.M.3
-
26
-
-
0031147829
-
Peculiar archaea found in Japanese paddy soils
-
Kudo, Y., Shibata, S., Miyaki, T., Aono, T., and Oyaizu, H. (1997) Peculiar archaea found in Japanese paddy soils. Biosci Biotechnol Biochem 61: 917-920.
-
(1997)
Biosci Biotechnol Biochem
, vol.61
, pp. 917-920
-
-
Kudo, Y.1
Shibata, S.2
Miyaki, T.3
Aono, T.4
Oyaizu, H.5
-
27
-
-
0031895203
-
Bacterial phylogeny based on comparative sequence analysis
-
Ludwig, W., Strunk, O., Klugbauer, S., Klugbauer, N., Weizenegger, M., Neumaier, J., Bachleitner, M., and Schleifer, K.H. (1998) Bacterial phylogeny based on comparative sequence analysis. Electrophoresis 19: 554-568. (see also: http://www.arb-home.de).
-
(1998)
Electrophoresis
, vol.19
, pp. 554-568
-
-
Ludwig, W.1
Strunk, O.2
Klugbauer, S.3
Klugbauer, N.4
Weizenegger, M.5
Neumaier, J.6
Bachleitner, M.7
Schleifer, K.H.8
-
28
-
-
0031033118
-
Crenarchaeota in Lake Michigan sediment
-
McGregor, B.J., Moser, D.P., Alm, E.W., Nealson, K.H., and Stahl, D. (1997) Crenarchaeota in Lake Michigan sediment. Appl Env Microbiol 63: 1178-1181.
-
(1997)
Appl Env Microbiol
, vol.63
, pp. 1178-1181
-
-
McGregor, B.J.1
Moser, D.P.2
Alm, E.W.3
Nealson, K.H.4
Stahl, D.5
-
29
-
-
0035079979
-
Expression and isolation of antimicrobial small molecules from soil DNA libraries
-
MacNeil, I.A., Tiong, C.L., Minor, C., August, P.R., Grossman, T.H., Loiacono, K.A., Lynch, B.A., et al. (2001) Expression and isolation of antimicrobial small molecules from soil DNA libraries. J Mol Microbiol Biotechnol 3: 301-308.
-
(2001)
J Mol Microbiol Biotechnol
, vol.3
, pp. 301-308
-
-
MacNeil, I.A.1
Tiong, C.L.2
Minor, C.3
August, P.R.4
Grossman, T.H.5
Loiacono, K.A.6
Lynch, B.A.7
-
30
-
-
0030620440
-
Vertical distribution and phylogenetic characterization of marine planktonic Archaea in the Santa Barbara Channel
-
Massana, R., Murray, A.E., Preston, C.M., and DeLong, E.F. (1997) Vertical distribution and phylogenetic characterization of marine planktonic Archaea in the Santa Barbara Channel. Appl Environ Microbiol 63: 50-56.
-
(1997)
Appl Environ Microbiol
, vol.63
, pp. 50-56
-
-
Massana, R.1
Murray, A.E.2
Preston, C.M.3
DeLong, E.F.4
-
31
-
-
0034831587
-
Defining the core of nontransferable prokaryotic genes: The euryarchaeal core
-
Nesbo, C.L., Boucher, Y., and Doolittle, W.F. (2001) Defining the core of nontransferable prokaryotic genes: the euryarchaeal core. J Mol Evol 53: 340-350.
-
(2001)
J Mol Evol
, vol.53
, pp. 340-350
-
-
Nesbo, C.L.1
Boucher, Y.2
Doolittle, W.F.3
-
32
-
-
0030982247
-
A molecular view of microbial diversity and the biosphere
-
Pace, N.R. (1997) A molecular view of microbial diversity and the biosphere. Science 276: 734-740.
-
(1997)
Science
, vol.276
, pp. 734-740
-
-
Pace, N.R.1
-
33
-
-
0036203309
-
Diversity of nitrite reductase (nirK and nirS) gene fragments in forested upland and wetland soils
-
Priemé, A., Braker, G., and Tiedje, J.M. (2002) Diversity of Nitrite Reductase (nirK and nirS) Gene Fragments in Forested Upland and Wetland Soils. Appl Environ Microbiol 68: 1893-1900.
-
(2002)
Appl Environ Microbiol
, vol.68
, pp. 1893-1900
-
-
Priemé, A.1
Braker, G.2
Tiedje, J.M.3
-
35
-
-
18844481269
-
Cloning the soil metagenome: A strategy for accessing the genetic and functional diversity of uncultured microorganisms
-
Rondon, M.R., August, P.R., Bettermann, A.D., Brady, S.F., Grossman, T.H., et al. (2000) Cloning the soil metagenome: a strategy for accessing the genetic and functional diversity of uncultured microorganisms. Appl Environ Microbiol 66: 2541-2547.
-
(2000)
Appl Environ Microbiol
, vol.66
, pp. 2541-2547
-
-
Rondon, M.R.1
August, P.R.2
Bettermann, A.D.3
Brady, S.F.4
Grossman, T.H.5
-
36
-
-
0032792809
-
Abundance and diversity of Archaea in heavy-metal-contaminated soils
-
Sandaa, R.A., Enger, O., and Torsvik, V. (1999) Abundance and diversity of Archaea in heavy-metal-contaminated soils. Appl Environ Microbiol 65: 3293-3297.
-
(1999)
Appl Environ Microbiol
, vol.65
, pp. 3293-3297
-
-
Sandaa, R.A.1
Enger, O.2
Torsvik, V.3
-
37
-
-
0031033384
-
Recovery of crenarchaeotal ribosomal DNA sequences from freshwater-lake sediments
-
Schleper, C., Holben, W., and Klenk, H.P. (1997a) Recovery of crenarchaeotal ribosomal DNA sequences from freshwater-lake sediments. Appl Env Microbiol 63: 321-323.
-
(1997)
Appl Env Microbiol
, vol.63
, pp. 321-323
-
-
Schleper, C.1
Holben, W.2
Klenk, H.P.3
-
38
-
-
0030865449
-
Characterization of a DNA polymerase from the uncultivated psychrophilic archaeon Cenarchaeum symbiosum
-
Schleper, C., Swanson, R.V., Mathur, E.J., and DeLong, E.F. (1997b) Characterization of a DNA polymerase from the uncultivated psychrophilic archaeon Cenarchaeum symbiosum. J Bacteriol 179: 7803-7811.
-
(1997)
J Bacteriol
, vol.179
, pp. 7803-7811
-
-
Schleper, C.1
Swanson, R.V.2
Mathur, E.J.3
DeLong, E.F.4
-
39
-
-
0031680049
-
Genomic analysis reveals chromosomal variation in natural populations of the uncultured psychrophilic archaeon Cenarchaeum symbiosum
-
Schleper, C., DeLong, E.F., Preston, C.M., Feldman, R.A., Wu, K.Y., and Swanson, R.V. (1998) Genomic analysis reveals chromosomal variation in natural populations of the uncultured psychrophilic archaeon Cenarchaeum symbiosum. J Bacteriol 180: 5003-5009.
-
(1998)
J Bacteriol
, vol.180
, pp. 5003-5009
-
-
Schleper, C.1
DeLong, E.F.2
Preston, C.M.3
Feldman, R.A.4
Wu, K.Y.5
Swanson, R.V.6
-
40
-
-
0034551673
-
Crenarchaeota colonize terrestrial plant roots
-
Simon, H.M., Dodsworth, J.A., and Goodman, R.M. (2000) Crenarchaeota colonize terrestrial plant roots. Environ Microbiol 2: 495-505.
-
(2000)
Environ Microbiol
, vol.2
, pp. 495-505
-
-
Simon, H.M.1
Dodsworth, J.A.2
Goodman, R.M.3
-
41
-
-
0030023659
-
Characterization of uncultivated prokaryotes: Isolation and analysis of a 40-kilobase-pair genome fragment from a planktonic marine archaeon
-
Stein, J., Marsh, T.L., Wu, K.Y., Shizuya, H., and DeLong, E.F. (1996) Characterization of uncultivated prokaryotes: isolation and analysis of a 40-kilobase-pair genome fragment from a planktonic marine archaeon. J Bacteriol 178: 591-599.
-
(1996)
J Bacteriol
, vol.178
, pp. 591-599
-
-
Stein, J.1
Marsh, T.L.2
Wu, K.Y.3
Shizuya, H.4
DeLong, E.F.5
-
42
-
-
0037052493
-
Prokaryotic diversity-magnitude, dynamics, and controlling factors
-
Torsvik, V., Ovreas, L., and Thingstad, T.F. (2002) Prokaryotic diversity-magnitude, dynamics, and controlling factors. Science 296: 1064-1066.
-
(2002)
Science
, vol.296
, pp. 1064-1066
-
-
Torsvik, V.1
Ovreas, L.2
Thingstad, T.F.3
-
44
-
-
0028983870
-
Molecular phylogenetic analysis of a soil microbial community in a soybean field
-
Ueda, T., Suga, Y., and Matsuguchi, T. (1995) Molecular phylogenetic analysis of a soil microbial community in a soybean field. Eur J Soil Sci 46: 415-421.
-
(1995)
Eur J Soil Sci
, vol.46
, pp. 415-421
-
-
Ueda, T.1
Suga, Y.2
Matsuguchi, T.3
-
45
-
-
0029871047
-
Bradyrhizobium japonicum possesses two discrete sets of electron transfer flavoprotein genes: FixA, fixB and etfS, etfL
-
Weidenhaupt, M., Rossi, P., Beck, C., Fischer, H.-M., and Hennecke, H. (1996) Bradyrhizobium japonicum possesses two discrete sets of electron transfer flavoprotein genes: fixA, fixB and etfS, etfL. Arch Microbiol 165: 169-178.
-
(1996)
Arch Microbiol
, vol.165
, pp. 169-178
-
-
Weidenhaupt, M.1
Rossi, P.2
Beck, C.3
Fischer, H.-M.4
Hennecke, H.5
-
46
-
-
0027288036
-
Polyvinylpyrrolidonagarose gel electrophoresis purification of polymerase chain reaction-amplifiable DNA from soils
-
Young, C.C., Burghoff, R.L., Keim, L.G., Minak-Bernero, V., Lute, J.R., and Hinton, S.M. (1993) Polyvinylpyrrolidonagarose gel electrophoresis purification of polymerase chain reaction-amplifiable DNA from soils. Appl Environ Microbiol 59: 1972-1974.
-
(1993)
Appl Environ Microbiol
, vol.59
, pp. 1972-1974
-
-
Young, C.C.1
Burghoff, R.L.2
Keim, L.G.3
Minak-Bernero, V.4
Lute, J.R.5
Hinton, S.M.6
-
47
-
-
0030070838
-
DNA recovery from soils of diverse composition
-
Zhou, J., Bruns, M.A., and Tiedje, J.M. (1996) DNA recovery from soils of diverse composition. Appl Environ Microbiol 62: 316-322.
-
(1996)
Appl Environ Microbiol
, vol.62
, pp. 316-322
-
-
Zhou, J.1
Bruns, M.A.2
Tiedje, J.M.3
|