Grassland management regimens reduce small-scale heterogeneity and species diversity of β-proteobacterial ammonia oxidizer populations

Applied and Environmental Microbiology

Volumn 68, Issue 1, 2002, Pages 20-30

  Webster, G ^a   Embley, T M ^a   Prosser, J I ^a  

^a UNIVERSITY OF ABERDEEN   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

DNA SEQUENCES; ELECTROPHORESIS; GENES; NITROGEN FERTILIZERS; RNA; SOILS;

SOIL MANAGEMENT;

MICROBIOLOGY;

AMMONIA; DNA;

BACTERIUM; GRASSLAND SOIL; HETEROGENEITY; MICROBIAL COMMUNITY; SOIL MANAGEMENT; SPECIES DIVERSITY;

ARTICLE; GEL ELECTROPHORESIS; GRAM NEGATIVE BACTERIUM; NITROSOMONAS; NITROSOSPIRA; NONHUMAN; NUCLEOTIDE SEQUENCE; OLIGONUCLEOTIDE PROBE; PHYLOGENY; POLYMERASE CHAIN REACTION; SOIL; SPECIES DIFFERENTIATION;

AMMONIA; BETAPROTEOBACTERIA; CONSERVATION OF NATURAL RESOURCES; DNA, RIBOSOMAL; ECOSYSTEM; GENES, RRNA; MOLECULAR SEQUENCE DATA; NITROSOMONAS; OXIDATION-REDUCTION; OXIDOREDUCTASES; PHYLOGENY; POACEAE; POLYMERASE CHAIN REACTION; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA; SOIL MICROBIOLOGY; VARIATION (GENETICS);

BACTERIA (MICROORGANISMS); NEGIBACTERIA; NITROSOMONAS; NITROSOMONAS EUROPAEA; NITROSOSPIRA; PROTEOBACTERIA;

EID: 0036135250     PISSN: 00992240     EISSN: None     Source Type: Journal    
DOI: 10.1128/AEM.68.1.20-30.2002     Document Type: Article

References (50)

1. Ammonia oxidation at low pH by attached populations of nitrifying bacteria
2. Comparative diversity of ammonia oxidizer 16S rRNA gene sequences in native, tilled, and successional soils
3. Ureolytic nitrification at low pH by Nitrosospira species
4. Nitrification at low pH by aggregated chemolithotrophic bacteria
5. How stable is stable? Function versus community composition
6. Nitrogen mineralization, immobilization, and nitrification
7. The phylogeny of autotrophic ammonia-oxidizing bacteria as determined by analysis of 16S ribosomal RNA gene sequences
8. Amplification of 16S ribosomal RNA genes of autotrophic ammonia-oxidizing bacteria demonstrates the ubiquity of nitrosospiras in the environment
9. Microsporidia are related to fungi: Evidence from the largest subunit of RNA polymerase II and other proteins
10. Iron hydrogenases and the evolution of anaerobic eukaryotes
11. Nitrification in coniferous forest soils
12. Autotrophic ammonium-oxidizing bacteria in Swedish mor humus
13. Multiple copies of ammonia monooxygenase (amo) operons have evolved under biased AT/GC mutational pressure in ammonia-oxidizing autotrophic bacteria
14. Description of a new species of Nitrosococcus
15. Analysis of ammonia-oxidizing bacteria of the β-subdivision of the class Proteobacteria in coastal sand dunes by denaturing gradient gel electrophoresis and sequencing of PCR-amplified 16S ribosomal DNA fragments
16. Reconstructing evolutionary trees from DNA and protein sequences: Paralinear distances
17. Evolution of chlorophyll and bacteriochlorophyll: The problem of invariant sites in sequence analysis
18. Additional evidence of inhibition of nitrifiers and possible cycling of inhibitors produced by selected plants in a climax community
19. Numbers of autotrophic nitrifiers and nitrification in fertilized forest soil
20. Succession and convergence of biofilm communities in fixed-film reactors treating aromatic hydrocarbons in groundwater
21. Molecular analysis of enrichment cultures of marine ammonia oxidizers
22. Molecular analysis of bacterial community structure and diversity in unimproved and improved upland grass pastures
23. Nitrogen cycling and community structure of proteobacterial β-subgroup ammonia-oxidizing bacteria within polluted marine fish farm sediments
24. Sequence of the gene coding for ammonium monooxygenase in Nitrosomonas europaea
25. Use of molecular and isotopic techniques to monitor the response of autotrophic ammonia-oxidizing populations of the β-subdivision of the class Proteobacteria in arable soils to nitrogen fertilizer
26. Phylogenetic probes for analyzing abundance and spatial organization of nitrifying bacteria
27. DGGE/TGGE a method for identifying genes from natural ecosystems
28. Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA
29. Characterization of the dominant and rare members of a young Hawaiian soil bacterial community with small subunit ribosomal DNA amplified from DNA fractionated on the basis of its guanine and cytosine composition
30. Isolation of nucleic acids from environmental samples
31. Phylogenetic differences between particle-associated and planktonic ammonia-oxidizing bacteria of the β-subdivision of the class Proteobacteria in the Northwestern Mediterranean Sea
32. Effects of agronomic treatments on structure and function of ammonia-oxidizing communities
33. Autotrophic nitrification in bacteria
34. Inhibition of nitrification by climax ecosystems
35. Herbage production: Grasses and legumes
36. Nitrifying bacteria
37. Molecular diversity of soil and marine 16S rDNA sequences related to β-subgroup ammonia-oxidizing bacteria
38. Analysis of β-subgroup proteobacterial ammonia oxidizer populations in soil by denaturing gradient gel electrophoresis analysis and hierarchical phylogenetic probing
39. Effect of toxic metals on indigenous soil β-subgroup proteobacterium ammonia oxidizer community structure and protection against toxicity by inoculated metal-resistant bacteria
40. The influence oflhe soil matrix on nitrogen mineralisation and nitrification. I. Spatial variation and a hierarchy of soil properties
41. Evolutionary relationships among ammonia- and nitrite-oxidizing bacteria
42. Detection of low numbers of bacterial cells in soils and sediments by polymerase chain reaction
43. Phylogenetic analysis of seven new isolates of ammonia-oxidizing bacteria based on 16S rRNA gene sequences
44. Nitrification and autotrophic nitrifying bacteria in acid tea soils
45. The nodulation of micro-propagated plants of Parasponia andersonii by tropical legume rhizobia
46. The phylogeny of the purple bacteria: The gamma subdivision
47. Detection of amo gene of chemolithotrophic ammonia-oxidizers in soil by nested PCR