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Volumn 3, Issue 3, 2000, Pages 236-251

Population and community level approaches for analysing microbial diversity in natural environments

Author keywords

Diversity; DNA analysis; Microbial communities; Phenotypic approaches; Phylogeny

Indexed keywords

COMMUNITY ECOLOGY; MICROBIAL COMMUNITY; POPULATION ECOLOGY; SPECIES DIVERSITY;

EID: 0034127563     PISSN: 1461023X     EISSN: None     Source Type: Journal    
DOI: 10.1046/j.1461-0248.2000.00148.x     Document Type: Review
Times cited : (121)

References (106)
  • 1
    • 0032974993 scopus 로고    scopus 로고
    • Diversity of free living and attached bacteria in offshore Western Mediterranean waters as depicted by analysis of genes encoding 16S rRNA
    • Acinas, S.G., Antón, J. & Rodríges-Valera (1999). Diversity of free living and attached bacteria in offshore Western Mediterranean waters as depicted by analysis of genes encoding 16S rRNA. Appl. Environ. Microbiology, 65, 514-522.
    • (1999) Appl. Environ. Microbiology , vol.65 , pp. 514-522
    • Acinas, S.G.1    Antón, J.2    Rodríges-Valera3
  • 2
    • 0025919081 scopus 로고
    • Aerobic biodegradation potential of subsurface microorganisms from a jet-fuel-contaminated aquifer
    • Aelion, C.M. & Bradley, P.M. (1991). Aerobic biodegradation potential of subsurface microorganisms from a jet-fuel-contaminated aquifer. Appl. Environ. Microbiology, 57, 57-63.
    • (1991) Appl. Environ. Microbiology , vol.57 , pp. 57-63
    • Aelion, C.M.1    Bradley, P.M.2
  • 3
    • 0028946084 scopus 로고
    • Phylogenetic identification & in situ detection of individual microbial cells without cultivation
    • Amann, R.I., Ludwig, W. & Schleifer, K.H. (1995). Phylogenetic identification & in situ detection of individual microbial cells without cultivation. Microbiol. Rev., 59, 143-169.
    • (1995) Microbiol. Rev. , vol.59 , pp. 143-169
    • Amann, R.I.1    Ludwig, W.2    Schleifer, K.H.3
  • 4
    • 0003039149 scopus 로고
    • Diversity of microbial communities
    • Atlas, R.M. (1984). Diversity of microbial communities. Adv. Microbial Ecology, 7, 1-47.
    • (1984) Adv. Microbial Ecology , vol.7 , pp. 1-47
    • Atlas, R.M.1
  • 5
    • 0000388522 scopus 로고
    • Adaptation of aquatic microbial communities to Hg2+
    • Barkay, T. (1987). Adaptation of aquatic microbial communities to Hg2+. Appl. Environ. Microbiology, 53, 2725-2732.
    • (1987) Appl. Environ. Microbiology , vol.53 , pp. 2725-2732
    • Barkay, T.1
  • 6
    • 0022471637 scopus 로고
    • Coincident plasmids and antimicrobial resistance in marine bacteria isolated from polluted and unpolluted Atlantic ocean samples
    • Baya, A.M., Brayton, P.R., Brown, V.L., Grimes, D.J. & Russek-Cohen, E. &. Colwell, R.R. (1986). Coincident plasmids and antimicrobial resistance in marine bacteria isolated from polluted and unpolluted Atlantic ocean samples. Appl. Environ. Microbiology, 51, 1285-1292.
    • (1986) Appl. Environ. Microbiology , vol.51 , pp. 1285-1292
    • Baya, A.M.1    Brayton, P.R.2    Brown, V.L.3    Grimes, D.J.4    Russek-Cohen, E.5    Colwell, R.R.6
  • 7
    • 0025776958 scopus 로고
    • Occurrence of antibiotic and metal resistance & plasmids in Bacillus strains isolated from marine sediment
    • Belliveau, B.H., Starodub, M.E. & Trevors, J.T. (1991). Occurrence of antibiotic and metal resistance & plasmids in Bacillus strains isolated from marine sediment. Can J. Microbiology, 37, 513-520.
    • (1991) Can J. Microbiology , vol.37 , pp. 513-520
    • Belliveau, B.H.1    Starodub, M.E.2    Trevors, J.T.3
  • 9
    • 0030860238 scopus 로고    scopus 로고
    • Molecular microbial diversity in soils from eastern Amazonia: Evidence for unusual microorganisms and microbial population shifts associated with deforestation
    • Borneman, J. & Triplett, E.C. (1997). Molecular microbial diversity in soils from eastern Amazonia: Evidence for unusual microorganisms and microbial population shifts associated with deforestation. Appl. Environ. Microbiology, 63, 2647-2653.
    • (1997) Appl. Environ. Microbiology , vol.63 , pp. 2647-2653
    • Borneman, J.1    Triplett, E.C.2
  • 11
    • 0026630452 scopus 로고
    • Use of 16S rRNA analysis to investigate phylogeny of methylotrophic bacteria
    • Bratina, B.J., Brusseau, G.A. & Hanson, R.S. (1992). Use of 16S rRNA analysis to investigate phylogeny of methylotrophic bacteria. Int. J. Syst. Bacteriol., 42, 645-648.
    • (1992) Int. J. Syst. Bacteriol. , vol.42 , pp. 645-648
    • Bratina, B.J.1    Brusseau, G.A.2    Hanson, R.S.3
  • 12
    • 0014407722 scopus 로고
    • Repeated sequences in DNA
    • Britten, R.J. & Kohne, D.E. (1968). Repeated sequences in DNA. Science, 161, 529-540.
    • (1968) Science , vol.161 , pp. 529-540
    • Britten, R.J.1    Kohne, D.E.2
  • 13
    • 0030817782 scopus 로고    scopus 로고
    • Analysis of mer Gene Subclasses within Bacterial Communities in Soils and Sediments Resolved by Fluorescent-PCR-Restriction Fragment length Polymorphism profiling
    • Bruce, K.D. (1997). Analysis of mer Gene Subclasses within Bacterial Communities in Soils and Sediments Resolved by Fluorescent-PCR-Restriction Fragment length Polymorphism profiling. Appl. Environ. Microbiology, 63, 4914-4919.
    • (1997) Appl. Environ. Microbiology , vol.63 , pp. 4914-4919
    • Bruce, K.D.1
  • 14
    • 0028154044 scopus 로고
    • Phylogenetic analysis and development of probes for differentiating methylogenetic bacteria
    • Brusseau, G.A., Bulygina, E.S. & Hanson, R.S. (1994) Phylogenetic analysis and development of probes for differentiating methylogenetic bacteria. Appl. Environ. Microbiology, 60, 626-636.
    • (1994) Appl. Environ. Microbiology , vol.60 , pp. 626-636
    • Brusseau, G.A.1    Bulygina, E.S.2    Hanson, R.S.3
  • 15
    • 0020360486 scopus 로고
    • Distribution of bacterial plasmids in clean & polluted sites in a South Wales river
    • Burton, N.F., Martin, J.D. & Bull., A.T. (1982). Distribution of bacterial plasmids in clean & polluted sites in a South Wales river. Appl. Environ. Microbiology, 44, 1026-1029.
    • (1982) Appl. Environ. Microbiology , vol.44 , pp. 1026-1029
    • Burton, N.F.1    Martin, J.D.2    Bull, A.T.3
  • 16
    • 0026613648 scopus 로고
    • Soil bacterial biomass, activity, phospholipid fatty acid pattern, and pH tolerance in an area polluted with alkaline dust deposition
    • Bååth, E., Frostegård, Å. & Fritze, H. (1992). Soil bacterial biomass, activity, phospholipid fatty acid pattern, and pH tolerance in an area polluted with alkaline dust deposition. Appl. Environ. Microbiology, 58, 4026-4031.
    • (1992) Appl. Environ. Microbiology , vol.58 , pp. 4026-4031
    • Bååth, E.1    Frostegård, Å.2    Fritze, H.3
  • 18
    • 0019348834 scopus 로고
    • Evolutionary significance of accessory DNA elements in Bacteria
    • Campbell, A. (1981). Evolutionary significance of accessory DNA elements in Bacteria. Annu. Rev. Microbiology, 35, 55-83.
    • (1981) Annu. Rev. Microbiology , vol.35 , pp. 55-83
    • Campbell, A.1
  • 19
  • 20
    • 0001297069 scopus 로고
    • The microbial loop in soil
    • (eds Ritz, K., Dighton, J. & Giller, K.E.). John Wiley & Sons, Chichester
    • Clarholm, M. (1994). The microbial loop in soil. In: Beyonf the Biomass(eds Ritz, K., Dighton, J. & Giller, K.E.). John Wiley & Sons, Chichester, pp. 221-230.
    • (1994) Beyonf the Biomass , pp. 221-230
    • Clarholm, M.1
  • 22
    • 0031238743 scopus 로고    scopus 로고
    • Where's the limit? Changes in the microbiological properties of agricultural soils at low levels of metal contamination
    • Dahlin, S., Witter, E., Mårtensson, A., Turner, A. & Bååth, E. (1997). Where's the limit? Changes in the microbiological properties of agricultural soils at low levels of metal contamination. Soil Biol. Biochemistry, 29, 1405-1415.
    • (1997) Soil Biol. Biochemistry , vol.29 , pp. 1405-1415
    • Dahlin, S.1    Witter, E.2    Mårtensson, A.3    Turner, A.4    Bååth, E.5
  • 23
    • 0032404077 scopus 로고    scopus 로고
    • Microbial functional diversity can be influenced by the addition of simple organic substrates to soil
    • Degens, B.P. (1998a). Microbial functional diversity can be influenced by the addition of simple organic substrates to soil. Soil Biol. Biochemistry, 30, 1981-1988.
    • (1998) Soil Biol. Biochemistry , vol.30 , pp. 1981-1988
    • Degens, B.P.1
  • 24
    • 0032401890 scopus 로고    scopus 로고
    • Decrease in microbial functional diversity do not result in corresponding changes in decomposition under different moisture conditions
    • Degens, B.P. (1998b). Decrease in microbial functional diversity do not result in corresponding changes in decomposition under different moisture conditions. Soil Biol. Biochemistry, 30, 1989-2000.
    • (1998) Soil Biol. Biochemistry , vol.30 , pp. 1989-2000
    • Degens, B.P.1
  • 25
    • 0031239470 scopus 로고    scopus 로고
    • Development of a physiological approach to measuring the catabolic diversity of soil microbial communities
    • Degens, B.P. & Harris, J.A. (1997). Development of a physiological approach to measuring the catabolic diversity of soil microbial communities. Soil Biol. Biochemistry, 29, 1309-1320.
    • (1997) Soil Biol. Biochemistry , vol.29 , pp. 1309-1320
    • Degens, B.P.1    Harris, J.A.2
  • 26
    • 0028594902 scopus 로고
    • High abundance of Archaea in Antarctic marine picoplankton
    • DeLong, E.F., Wu, K.Y., Prezelin, B.B. & Jovine, R.V.M. (1994). High abundance of Archaea in Antarctic marine picoplankton. Nature, 371, 695-697.
    • (1994) Nature , vol.371 , pp. 695-697
    • Delong, E.F.1    Wu, K.Y.2    Prezelin, B.B.3    Jovine, R.V.M.4
  • 27
    • 0031981808 scopus 로고    scopus 로고
    • Santa Rosalia revisited: Why are there so many species of bacteria?
    • Dykhuisen, D.E. (1997). Santa Rosalia revisited: Why are there so many species of bacteria? Antonie Van Leeuwenhoek, 73, 25-33.
    • (1997) Antonie Van Leeuwenhoek , vol.73 , pp. 25-33
    • Dykhuisen, D.E.1
  • 28
    • 0002554275 scopus 로고    scopus 로고
    • Species in practice: Exploring uncultured procaryote diversity in natural samples
    • (eds Claridge, M.F., Dawah, H.A. & Wilson, M.R.) Chapman & Hall, London
    • Embley, T.M., Stackebrandt, E. (1997). Species in practice: exploring uncultured procaryote diversity in natural samples. In: Species: the Units of Biodiversity (eds Claridge, M.F., Dawah, H.A. & Wilson, M.R.) Chapman & Hall, London, pp. 61-68.
    • (1997) Species: the Units of Biodiversity , pp. 61-68
    • Embley, T.M.1    Stackebrandt, E.2
  • 29
    • 0030063913 scopus 로고    scopus 로고
    • Denaturing gradient gel electrophoresis profiles of 16S rRNA-defined populations inhabiting a hot spring microbial mat community
    • Ferris, M., Muyzer, G. & Ward, D. (1996). Denaturing gradient gel electrophoresis profiles of 16S rRNA-defined populations inhabiting a hot spring microbial mat community. Appl. Environ. Microbiology, 62, 340-346.
    • (1996) Appl. Environ. Microbiology , vol.62 , pp. 340-346
    • Ferris, M.1    Muyzer, G.2    Ward, D.3
  • 31
    • 0032879764 scopus 로고    scopus 로고
    • Automated approach for ribosomal intergenic spacer analysis of microbial diversity and its application to freshwater bacterial communities
    • Fisher, M.M. & Triplett, E.W. (1999). Automated approach for ribosomal intergenic spacer analysis of microbial diversity and its application to freshwater bacterial communities. Appl. Environ. Microbiology, 65, 4630-4636.
    • (1999) Appl. Environ. Microbiology , vol.65 , pp. 4630-4636
    • Fisher, M.M.1    Triplett, E.W.2
  • 32
    • 0027336561 scopus 로고
    • Phylogenetic diversity of subsurface marine microbial communities from the Atlantic and Pacific Oceans
    • Fuhrman, J.A., McCallum, K. & Davis, A.A. (1993). Phylogenetic diversity of subsurface marine microbial communities from the Atlantic and Pacific Oceans. Appl. Environ. Microbiology, 59, 1294-1302.
    • (1993) Appl. Environ. Microbiology , vol.59 , pp. 1294-1302
    • Fuhrman, J.A.1    McCallum, K.2    Davis, A.A.3
  • 34
    • 0002111971 scopus 로고
    • A community-level physiological approach for studying microbial communities
    • (eds Ritz, K., Dighton, J. & Giller, K.E.). John Wiley & Sons, Chichester
    • Garland, J.L. & Mills, A.L. (1994). A community-level physiological approach for studying microbial communities. In: Beyond the Biomass (eds Ritz, K., Dighton, J. & Giller, K.E.). John Wiley & Sons, Chichester, pp. 77-83.
    • (1994) Beyond the Biomass , pp. 77-83
    • Garland, J.L.1    Mills, A.L.2
  • 35
    • 0023958997 scopus 로고
    • Phylogenetic group specific oligodeoxynucleotide probes for identification of single microbial cells
    • Giovannoni, S.J., DeLong, E.F., Olsen, G.J. & Pace, N.R. (1988). Phylogenetic group specific oligodeoxynucleotide probes for identification of single microbial cells. J. Bacteriol., 170, 720-726.
    • (1988) J. Bacteriol. , vol.170 , pp. 720-726
    • Giovannoni, S.J.1    Delong, E.F.2    Olsen, G.J.3    Pace, N.R.4
  • 36
  • 37
    • 0029798513 scopus 로고    scopus 로고
    • 16S rRNA genes reveal stratified open ocean bacterioplankton populations related to the Green Non-Sulfur bacteria
    • Giovannoni, S.J., Rappè, M.S., Vergin, K.L. & Adair, N.L. (1996). 16S rRNA genes reveal stratified open ocean bacterioplankton populations related to the Green Non-Sulfur bacteria. Proc. Natural Acad. Sci., 93, 7979-7984.
    • (1996) Proc. Natural Acad. Sci. , vol.93 , pp. 7979-7984
    • Giovannoni, S.J.1    Rappè, M.S.2    Vergin, K.L.3    Adair, N.L.4
  • 39
    • 0027042854 scopus 로고
    • Periphyton response in an industrial receiving stream: Lipid-based physiological stress analysis and pattern recognition of microbial community structure
    • Guckert, J.B., Nold, S.C., Boston, H.L. & White, D.C. (1992). Periphyton response in an industrial receiving stream: lipid-based physiological stress analysis and pattern recognition of microbial community structure. Can. J. Fishery Aquat. Science, 49, 2579-2587.
    • (1992) Can. J. Fishery Aquat. Science , vol.49 , pp. 2579-2587
    • Guckert, J.B.1    Nold, S.C.2    Boston, H.L.3    White, D.C.4
  • 40
    • 0028965663 scopus 로고
    • Analysis of factors affecting the accuracy, reproducibility, and interpretation of microbial community carbon source utilization patterns
    • Haack, S.K., Garchow, H., Klug, M.J. & Forney, L.J. (1995). Analysis of factors affecting the accuracy, reproducibility, and interpretation of microbial community carbon source utilization patterns. Appl. Environ. Microbiology, 61, 1458-1468.
    • (1995) Appl. Environ. Microbiology , vol.61 , pp. 1458-1468
    • Haack, S.K.1    Garchow, H.2    Klug, M.J.3    Forney, L.J.4
  • 41
    • 0028236811 scopus 로고
    • Accuracy, reproducibility, and interpretation of fatty acid methyl ester profiles of model bacterial communities
    • Haack, S.K., Garchow, H., Odelson, D.A., Forney, L.J. & Klug, M.J. (1994). Accuracy, reproducibility, and interpretation of fatty acid methyl ester profiles of model bacterial communities. Appl. Environ. Microbiology, 60, 2483-2493.
    • (1994) Appl. Environ. Microbiology , vol.60 , pp. 2483-2493
    • Haack, S.K.1    Garchow, H.2    Odelson, D.A.3    Forney, L.J.4    Klug, M.J.5
  • 42
    • 0027954194 scopus 로고
    • Comparison of the microbiota recovered from surface and deep subsurface rock, water and soil along an elevational gradient
    • Haldeman, D.L., Pitonzo, B.J., Story, S.P. & Amy, P.S. (1994). Comparison of the microbiota recovered from surface and deep subsurface rock, water and soil along an elevational gradient. Geomicrobiol. J., 12, 99-111.
    • (1994) Geomicrobiol. J. , vol.12 , pp. 99-111
    • Haldeman, D.L.1    Pitonzo, B.J.2    Story, S.P.3    Amy, P.S.4
  • 43
    • 0025812508 scopus 로고
    • Improved method for phenotypical characterization of marine bacteria
    • Hansen, G.H. & Sørheim, R. (1991). Improved method for phenotypical characterization of marine bacteria. J. Microbiol. Methods, 13, 231-241.
    • (1991) J. Microbiol. Methods , vol.13 , pp. 231-241
    • Hansen, G.H.1    Sørheim, R.2
  • 44
    • 0030985422 scopus 로고    scopus 로고
    • Evaluation of community-level catabolic profiling using BIOLOG GN microplates to study microbial community changes in potato phyllospere
    • Heuer, H. & Smalla, K. (1997). Evaluation of community-level catabolic profiling using BIOLOG GN microplates to study microbial community changes in potato phyllospere. J. Microbiol. Methods, 30, 49-62.
    • (1997) J. Microbiol. Methods , vol.30 , pp. 49-62
    • Heuer, H.1    Smalla, K.2
  • 45
    • 0030872627 scopus 로고    scopus 로고
    • Bacterial diversity in Adirondack Mountain Lakes as revealed by 16S rRNA gene sequences
    • Hiorns, W.D., Methè, B.A., Nierzwicki-Bauer, S.A. & Zehr, J.P. (1997). Bacterial diversity in Adirondack Mountain Lakes as revealed by 16S rRNA gene sequences. Appl. Environ. Microbiology, 63, 2957-2960.
    • (1997) Appl. Environ. Microbiology , vol.63 , pp. 2957-2960
    • Hiorns, W.D.1    Methè, B.A.2    Nierzwicki-Bauer, S.A.3    Zehr, J.P.4
  • 46
    • 0343109024 scopus 로고
    • Analysis of structure and selection in microbial communities by molecular methods
    • (eds Guerrero, R. & Pedros-Alio, C.), Spanish Society for Microbiology, Barcelona, Spain
    • Holben, W.E., Calabrese, V.G.M., Harris, D., Ka, J.O. & Tiedje, J.M. (1993). Analysis of structure and selection in microbial communities by molecular methods. In: Trends in Microbial Ecology (eds Guerrero, R. & Pedros-Alio, C.), Spanish Society for Microbiology, Barcelona, Spain.
    • (1993) Trends in Microbial Ecology
    • Holben, W.E.1    Calabrese, V.G.M.2    Harris, D.3    Ka, J.O.4    Tiedje, J.M.5
  • 48
    • 0032080387 scopus 로고    scopus 로고
    • Diversity in methane enrichments from agricultural soil revealed by DGGE separation of PCR amplified 16S rDNA fragments
    • Jensen, S., Øvreas, L., Daae, F.L. & Torsvik, V. (1998). Diversity in methane enrichments from agricultural soil revealed by DGGE separation of PCR amplified 16S rDNA fragments. FEMS Microbiol. Ecology, 26, 17-26.
    • (1998) FEMS Microbiol. Ecology , vol.26 , pp. 17-26
    • Jensen, S.1    Øvreas, L.2    Daae, F.L.3    Torsvik, V.4
  • 49
    • 0028265724 scopus 로고
    • Genetic & phenotypic diversity of 2,4-dichlorophenoxyacetic acid (2,4-D)-degrading bacteria isolated from 2,4-D-treated field soils
    • Ka, J.O., Holben, W.E. & Tiedje, J.M. (1994). Genetic & phenotypic diversity of 2,4-dichlorophenoxyacetic acid (2,4-D)-degrading bacteria isolated from 2,4-D-treated field soils. Appl. Environ. Microbiology, 60, 1160-1165.
    • (1994) Appl. Environ. Microbiology , vol.60 , pp. 1160-1165
    • Ka, J.O.1    Holben, W.E.2    Tiedje, J.M.3
  • 50
    • 0542365428 scopus 로고
    • Archaea (Archaebacteria)
    • (eds Benke, H.-D., Lüttge, U., Esser, K., Kadereit, J.W. & Runge, M.). Springer-Verlag, Heidelberg
    • Kandler, O. (1993). Archaea (Archaebacteria). In: Progress in Botany (eds Benke, H.-D., Lüttge, U., Esser, K., Kadereit, J.W. & Runge, M.). Springer-Verlag, Heidelberg, p. 54.
    • (1993) Progress in Botany , pp. 54
    • Kandler, O.1
  • 51
    • 0017695957 scopus 로고
    • Diversity of bacterial populations in the Beaufort Sea
    • Kaneko, T., Atlas, R.M. & Krichevsky, M. (1977). Diversity of bacterial populations in the Beaufort Sea. Nature, 270, 596-599.
    • (1977) Nature , vol.270 , pp. 596-599
    • Kaneko, T.1    Atlas, R.M.2    Krichevsky, M.3
  • 52
    • 0029475680 scopus 로고
    • Soil microbial diversity and the sustainability of agricultural soils
    • Kennedy, A.C. & Smith, K.L. (1995). Soil microbial diversity and the sustainability of agricultural soils. Plant Soil, 170, 75-86.
    • (1995) Plant Soil , vol.170 , pp. 75-86
    • Kennedy, A.C.1    Smith, K.L.2
  • 53
    • 0031920135 scopus 로고    scopus 로고
    • The use of carbon substrate utilization patterns in environmental and ecological microbiology
    • Konopka, A., Oliver, L. & Turco, R.F. Jr (1998). The use of carbon substrate utilization patterns in environmental and ecological microbiology. Microbial. Ecol., 35, 103-115.
    • (1998) Microbial. Ecol. , vol.35 , pp. 103-115
    • Konopka, A.1    Oliver, L.2    Turco Jr., R.F.3
  • 54
    • 0026001111 scopus 로고
    • Biochemical fingerprinting of water coliform bacteria, a new method for measuring phenotypic diversity and for comparing different bacterial populations
    • Kuhn, I., Allestam, G., Stenstrom, T.A. & Mollby, R. (1991). Biochemical fingerprinting of water coliform bacteria, a new method for measuring phenotypic diversity and for comparing different bacterial populations. Appl. Environ. Microbiology, 57, 3171-3177.
    • (1991) Appl. Environ. Microbiology , vol.57 , pp. 3171-3177
    • Kuhn, I.1    Allestam, G.2    Stenstrom, T.A.3    Mollby, R.4
  • 55
    • 0025191522 scopus 로고
    • In-situ depletion of pentachlorophenol from contaminated soil by, Phanerochaete Spp.
    • Lamar, R.T. & Dietrich, D.M. (1990). In-situ depletion of pentachlorophenol from contaminated soil by, Phanerochaete Spp. Appl. Environ. Microbiology, 56, 3093-3100.
    • (1990) Appl. Environ. Microbiology , vol.56 , pp. 3093-3100
    • Lamar, R.T.1    Dietrich, D.M.2
  • 57
    • 0026764237 scopus 로고
    • Occurrence of novel groups of the domain Bacteria as revealed by analysis of genetic material isolated from an Australian terrestrial environment
    • Liesack, W. & Stackebrandt, E. (1992). Occurrence of novel groups of the domain Bacteria as revealed by analysis of genetic material isolated from an Australian terrestrial environment. J. Bacteriol., 174, 5072-5078.
    • (1992) J. Bacteriol. , vol.174 , pp. 5072-5078
    • Liesack, W.1    Stackebrandt, E.2
  • 58
    • 0030661563 scopus 로고    scopus 로고
    • Characterization of microbial diversity by determining terminal restriction fragment lenght polymorphisms of genes encoding 16S rRNA
    • Liu, W.-T., Marsh, T.L., Cheng, H. & Forney, L.J. (1997). Characterization of microbial diversity by determining terminal restriction fragment lenght polymorphisms of genes encoding 16S rRNA. Appl. Environ. Microbiology, 63, 4516-4522.
    • (1997) Appl. Environ. Microbiology , vol.63 , pp. 4516-4522
    • Liu, W.-T.1    Marsh, T.L.2    Cheng, H.3    Forney, L.J.4
  • 59
    • 0014734528 scopus 로고
    • Correlation of melting temperature and cesium chloride boyant density of bacterial deoxyribonucleic acid
    • Mandel, M., Igambi, L., Bergendahl, J., Dodson, M.L. & Scheltgen, E. (1970). Correlation of melting temperature and cesium chloride boyant density of bacterial deoxyribonucleic acid. J. Bacteriol., 101, 333-338.
    • (1970) J. Bacteriol. , vol.101 , pp. 333-338
    • Mandel, M.1    Igambi, L.2    Bergendahl, J.3    Dodson, M.L.4    Scheltgen, E.5
  • 60
    • 0028981814 scopus 로고
    • Evaluation of prokaryotic diversity by restrictase digestion of 16S rDNA directly amplified from hypersaline environments
    • Martinez-Murcia, A.J., Acinas, S.G. & Rodriguez-Valera, F. (1995). Evaluation of prokaryotic diversity by restrictase digestion of 16S rDNA directly amplified from hypersaline environments. FEMS Microbiol. Ecol., 17, 247-255.
    • (1995) FEMS Microbiol. Ecol. , vol.17 , pp. 247-255
    • Martinez-Murcia, A.J.1    Acinas, S.G.2    Rodriguez-Valera, F.3
  • 61
    • 0001823647 scopus 로고
    • Bacterial community fingerprinting of amplified 16S and 16-23S ribosomal DNA gene sequences and restriction endonuclease analysis (ARDRA)
    • (eds Akkermans, A.D.L., van Elsas, J.D. & DeBruijn, F.J.). Kluwer Academic Publishers, Dordrecht, 3.3.2
    • Massol-Deya, A.A., Odelson, D.A., Hickey, R.F. & Tiedje, J.M. (1995). Bacterial community fingerprinting of amplified 16S and 16-23S ribosomal DNA gene sequences and restriction endonuclease analysis (ARDRA). In: Molecular Microbial Ecology Manual (eds Akkermans, A.D.L., van Elsas, J.D. & DeBruijn, F.J.). Kluwer Academic Publishers, Dordrecht, 3.3.2: 1-8.
    • (1995) Molecular Microbial Ecology Manual , pp. 1-8
    • Massol-Deya, A.A.1    Odelson, D.A.2    Hickey, R.F.3    Tiedje, J.M.4
  • 62
    • 0343897384 scopus 로고
    • Phospholipids to monitor microbial ecology in anaerobic digesters
    • (eds Smith, W.R. and Frank, J.R.). Elsevier Publishing, New York
    • Mikell, A.T., Phelps, T.J. & White, D.C. (1986). Phospholipids to monitor microbial ecology in anaerobic digesters. In: Methane Form Biomass. A System Approach (eds Smith, W.R. and Frank, J.R.). Elsevier Publishing, New York.
    • (1986) Methane Form Biomass. a System Approach
    • Mikell, A.T.1    Phelps, T.J.2    White, D.C.3
  • 63
    • 0027460328 scopus 로고
    • Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA
    • Muyzer, G., de-Waal, E.G. & Uitterlinden, A.G. (1993). Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA. Appl. Environ. Microbiology, 59, 695-700.
    • (1993) Appl. Environ. Microbiology , vol.59 , pp. 695-700
    • Muyzer, G.1    De-Waal, E.G.2    Uitterlinden, A.G.3
  • 64
    • 0029097821 scopus 로고
    • Phylogenetic-relationships of thiomicrospira species & their identification in deep-sea hydrothermal vent samples by denaturing gradient gel-electrophoresis of 16s r DNA fragments
    • Muyzer, G., Teske, A., Wirsen, C. & Jannasch, H. (1995). Phylogenetic-relationships of thiomicrospira species & their identification in deep-sea hydrothermal vent samples by denaturing gradient gel-electrophoresis of 16s r DNA fragments. Arch. Microbiol., 164, 165-172.
    • (1995) Arch. Microbiol. , vol.164 , pp. 165-172
    • Muyzer, G.1    Teske, A.2    Wirsen, C.3    Jannasch, H.4
  • 65
    • 0001868071 scopus 로고    scopus 로고
    • Denaturant gradient gel electrophoresis of PCR amplified 16S rDNA-A new molecular approach to analyse the genetic diversity of mixed microbial communities
    • (eds Akkermans, A.D.L., van Elsas, J.D. & DeBruijn, F.J.). Kluwer Academic Publishers, Dordrecht
    • Muyzer, G., Hottenträger, S., Teske, A. & Wawer, C. (1996). Denaturant gradient gel electrophoresis of PCR amplified 16S rDNA-A new molecular approach to analyse the genetic diversity of mixed microbial communities. In: Molecular Microbial Ecology Manual (eds Akkermans, A.D.L., van Elsas, J.D. & DeBruijn, F.J.). Kluwer Academic Publishers, Dordrecht.
    • (1996) Molecular Microbial Ecology Manual
    • Muyzer, G.1    Hottenträger, S.2    Teske, A.3    Wawer, C.4
  • 66
    • 0023476285 scopus 로고
    • Detection and localization of single base changes by denaturant gradient gel electrophoresis
    • Academic Press, New York
    • Myers, R.M., Maniatis, T. & Lerman, L.S. (1987). Detection and localization of single base changes by denaturant gradient gel electrophoresis. Methods in Enzymology, 155, 501-527. Academic Press, New York.
    • (1987) Methods in Enzymology , vol.155 , pp. 501-527
    • Myers, R.M.1    Maniatis, T.2    Lerman, L.S.3
  • 67
    • 38249038249 scopus 로고
    • Detection of a microbial consortium including type II methanotrophs by use of phospholipid fatty acids in a aerobic halogenated hydrocarcon degrading soil column enriched with natural gas
    • Nichols, P.D., Henson, J.M., Antworth, C.P., Parsons, J., Wilson, J.T. & White, D.C. (1987). Detection of a microbial consortium including type II methanotrophs by use of phospholipid fatty acids in a aerobic halogenated hydrocarcon degrading soil column enriched with natural gas. Environ. Toxicol. Chemistry, 6, 89-97.
    • (1987) Environ. Toxicol. Chemistry , vol.6 , pp. 89-97
    • Nichols, P.D.1    Henson, J.M.2    Antworth, C.P.3    Parsons, J.4    Wilson, J.T.5    White, D.C.6
  • 68
    • 0342868796 scopus 로고    scopus 로고
    • Characterization of the dominant and rare members of a young Hawaiian soil bacterial community with small-subunit ribosomal DNA amplified from DNA fractionated on the basis of its guanine and cytosine composition
    • Nüsslein, K. & Tiedje, J.M. (1998). Characterization of the dominant and rare members of a young Hawaiian soil bacterial community with small-subunit ribosomal DNA amplified from DNA fractionated on the basis of its guanine and cytosine composition. Appl. Environ. Microbiology, 64, 1283-1289.
    • (1998) Appl. Environ. Microbiology , vol.64 , pp. 1283-1289
    • Nüsslein, K.1    Tiedje, J.M.2
  • 70
    • 0030982247 scopus 로고    scopus 로고
    • A molecular view of microbial diversity and the biosphere
    • Pace, N.R. (1997). A molecular view of microbial diversity and the biosphere. Science, 276, 734-740.
    • (1997) Science , vol.276 , pp. 734-740
    • Pace, N.R.1
  • 71
    • 0027095085 scopus 로고
    • Population dynamics of bacteriophage and Bacillus subtilis in soil
    • Pantastico-Caldas, M., Duncan, K.E. & Istock, C.A. (1992). Population dynamics of bacteriophage and Bacillus subtilis in soil. Ecology, 73, 1888-1902.
    • (1992) Ecology , vol.73 , pp. 1888-1902
    • Pantastico-Caldas, M.1    Duncan, K.E.2    Istock, C.A.3
  • 73
    • 0028889420 scopus 로고
    • Conjugative transposons: An unusual and divers set of integratedgene transfer elements
    • Salyers, A.A., Shoemaker, N.B., Stevens, A.M. & Li, L.-Y. (1995). Conjugative transposons: an unusual and divers set of integratedgene transfer elements. Micobiol. Rev., 59, 579-590.
    • (1995) Micobiol. Rev. , vol.59 , pp. 579-590
    • Salyers, A.A.1    Shoemaker, N.B.2    Stevens, A.M.3    Li, L.-Y.4
  • 74
    • 0029851589 scopus 로고    scopus 로고
    • Denaturing gradient gel electrophoresis used to monitor the enrichment culture of aerobic chemoorganotrophic bacteria from a hot spring cyanobacterial mat
    • Santegoeds, C.M., Nold, S.C. & Ward, D.M. (1996). Denaturing gradient gel electrophoresis used to monitor the enrichment culture of aerobic chemoorganotrophic bacteria from a hot spring cyanobacterial mat. Appl. Environ. Microbiology, 62, 3922-3928.
    • (1996) Appl. Environ. Microbiology , vol.62 , pp. 3922-3928
    • Santegoeds, C.M.1    Nold, S.C.2    Ward, D.M.3
  • 75
    • 0000266924 scopus 로고
    • Fatty acid composition & microbial activity of benthic marine sediments from McMurdo Sound, Antarctica
    • Smith, G.A., Nichols, P.D. & White, D.C. (1986). Fatty acid composition & microbial activity of benthic marine sediments from McMurdo Sound, Antarctica. FEMS Microbiol. Ecology, 38, 219-231.
    • (1986) FEMS Microbiol. Ecology , vol.38 , pp. 219-231
    • Smith, G.A.1    Nichols, P.D.2    White, D.C.3
  • 76
    • 0002211974 scopus 로고
    • Partial and complete 16S rDNA sequences, their use in generation of 16S rDNA phylogenetic trees and their implications in molecular ecological studies
    • (eds Akkermans, A.D.L., van Elsas, J.D. & DeBruijn, F.J.). Kluwer Academic Publishers, Dordrecht, 3.1.1
    • Stackebrandt, E. & Rainey, F. A. (1995). Partial and complete 16S rDNA sequences, their use in generation of 16S rDNA phylogenetic trees and their implications in molecular ecological studies. In: Molecular Microbial Ecology Manual (eds Akkermans, A.D.L., van Elsas, J.D. & DeBruijn, F.J.). Kluwer Academic Publishers, Dordrecht, 3.1.1: 1-17.
    • (1995) Molecular Microbial Ecology Manual , pp. 1-17
    • Stackebrandt, E.1    Rainey, F.A.2
  • 77
    • 0030847229 scopus 로고    scopus 로고
    • Microbial diversity & community structure of postdisturbance forest soil as determined by sole-carbon-source utilization patterns
    • Staddon, W.J., Duchesne, L.C. & Trevors, J.T. (1996). Microbial diversity & community structure of postdisturbance forest soil as determined by sole-carbon-source utilization patterns. Microbial Ecol., 34, 125-130.
    • (1996) Microbial Ecol. , vol.34 , pp. 125-130
    • Staddon, W.J.1    Duchesne, L.C.2    Trevors, J.T.3
  • 78
    • 0024005650 scopus 로고
    • The use of phylogenetically based hybridization probes for studies of ruminal microbial ecology
    • Stahl, D.A., Flesher, B., Mansfield, H.R. & Montgomery, L. (1988). The use of phylogenetically based hybridization probes for studies of ruminal microbial ecology. Appl. Environ. Microbiology, 54, 1079-1084.
    • (1988) Appl. Environ. Microbiology , vol.54 , pp. 1079-1084
    • Stahl, D.A.1    Flesher, B.2    Mansfield, H.R.3    Montgomery, L.4
  • 79
    • 0002207582 scopus 로고
    • Cell envelopes and classification
    • (eds Goodfellow, M. & O'Donnell, A.G.). Academic Press, London
    • Suzuki, K., Goodfellow, M. & O'Donnell, A.G. (1993). Cell envelopes and classification. In: Handbook of New Bacterial Systematics (eds Goodfellow, M. & O'Donnell, A.G.). Academic Press, London, pp. 195-250.
    • (1993) Handbook of New Bacterial Systematics , pp. 195-250
    • Suzuki, K.1    Goodfellow, M.2    O'Donnell, A.G.3
  • 81
    • 0000798570 scopus 로고
    • Phenotypic divergences between populations of soil bacteria isolated on different media
    • Sørheim, R., Torsvik, V.L. & Goksøyr, J. (1989). Phenotypic divergences between populations of soil bacteria isolated on different media. Microbial Ecol., 17, 181-192.
    • (1989) Microbial Ecol. , vol.17 , pp. 181-192
    • Sørheim, R.1    Torsvik, V.L.2    Goksøyr, J.3
  • 82
    • 0029667164 scopus 로고    scopus 로고
    • Distribution of sulfate-reducing bacteria in a stratified fjord (Mariager Fjord, Denmark) as evaluated by most-probable-number counts and denaturing gradient gel electrophoresis of PCR-amplified ribosomal DNA fragments
    • Teske, A., Wawer, C., Muyzer, G. & Ramsing, N.B. (1996). Distribution of sulfate-reducing bacteria in a stratified fjord (Mariager Fjord, Denmark) as evaluated by most-probable-number counts and denaturing gradient gel electrophoresis of PCR-amplified ribosomal DNA fragments. Appl. Environ. Microbiology, 62, 1405-1415.
    • (1996) Appl. Environ. Microbiology , vol.62 , pp. 1405-1415
    • Teske, A.1    Wawer, C.2    Muyzer, G.3    Ramsing, N.B.4
  • 83
    • 0002058563 scopus 로고    scopus 로고
    • Theoretical models for the control of bacterial growth rate, abundance, diversity and carbon demand
    • Thingstad, T.F. & Lignell, R. (1997). Theoretical models for the control of bacterial growth rate, abundance, diversity and carbon demand. Aquat Microbial Ecology, 13, 19-27.
    • (1997) Aquat Microbial Ecology , vol.13 , pp. 19-27
    • Thingstad, T.F.1    Lignell, R.2
  • 85
    • 0000877039 scopus 로고
    • Lipid analysis and the relationship to chemotaxonomy
    • (ed. G.Gottschalk). Academic Press, London
    • Tornabene, T.G. (1985). Lipid analysis and the relationship to chemotaxonomy. In: Methods in Microbiology (ed. G.Gottschalk). Academic Press, London, 18, 209-234.
    • (1985) Methods in Microbiology , vol.18 , pp. 209-234
    • Tornabene, T.G.1
  • 87
    • 0025256110 scopus 로고
    • Comparison of phenotypic diversity and DNA heterogeneity in a population of soil bacteria
    • Torsvik, V., Salte, K., Sørheim, R. & Goksøyr, J. (1990b). Comparison of phenotypic diversity and DNA heterogeneity in a population of soil bacteria. Appl. Environ. Microbiology, 56, 776-781.
    • (1990) Appl. Environ. Microbiology , vol.56 , pp. 776-781
    • Torsvik, V.1    Salte, K.2    Sørheim, R.3    Goksøyr, J.4
  • 88
    • 0025020587 scopus 로고
    • 16S ribosomal RNA sequence analysis for determination of phylogenetic relationship among methylotrophs
    • Tsuji, K., Tsien, H.C., Hanson, R.S., DePalma, S.R., Scholtz, R. & LaRoche, S. (1990). 16S ribosomal RNA sequence analysis for determination of phylogenetic relationship among methylotrophs. J. General Microbiology, 136, 1-10.
    • (1990) J. General Microbiology , vol.136 , pp. 1-10
    • Tsuji, K.1    Tsien, H.C.2    Hanson, R.S.3    Depalma, S.R.4    Scholtz, R.5    Laroche, S.6
  • 89
    • 0000008516 scopus 로고
    • Biochemical analysis of biomass, community structure, nutritional status, and metabolic activity of microbial communities in soil
    • (eds Stotzky, G. & Bollag, J.-M.). Marcel Dekker, New York
    • Tunlid, A. & White, D.C. (1992). Biochemical analysis of biomass, community structure, nutritional status, and metabolic activity of microbial communities in soil. In: Soil Biochemistry (eds Stotzky, G. & Bollag, J.-M.). Marcel Dekker, New York, 7, 229-262.
    • (1992) Soil Biochemistry , vol.7 , pp. 229-262
    • Tunlid, A.1    White, D.C.2
  • 90
    • 0001129622 scopus 로고
    • Characterization of bacteria that supress Rhizoctonia damping off in bark compost media by analysis of fatty acid biomarkers
    • Tunlid, A., Hoitink, H.A.J., Low, C. & White, D.C. (1989). Characterization of bacteria that supress Rhizoctonia damping off in bark compost media by analysis of fatty acid biomarkers. Appl. Environ. Microbiology, 55, 1368-1374.
    • (1989) Appl. Environ. Microbiology , vol.55 , pp. 1368-1374
    • Tunlid, A.1    Hoitink, H.A.J.2    Low, C.3    White, D.C.4
  • 93
    • 0032082556 scopus 로고    scopus 로고
    • A natural species concept for procaryotes
    • Ward, D. (1998). A natural species concept for procaryotes. Current Opinion Microbiology, 1, 271-277.
    • (1998) Current Opinion Microbiology , vol.1 , pp. 271-277
    • Ward, D.1
  • 94
    • 6744223674 scopus 로고
    • Arcaebacterial lipids in hot-spring mats
    • Ward, D., Brassell, M.S.C. & Eglinton, G. (1985). Arcaebacterial lipids in hot-spring mats. Nature, 318, 693-694.
    • (1985) Nature , vol.318 , pp. 693-694
    • Ward, D.1    Brassell, M.S.C.2    Eglinton, G.3
  • 95
    • 0025366456 scopus 로고
    • 16S rRNA sequences reveal numerous uncultured microorganisms in a natural community
    • Ward, D., Weller, M., R. & Bateson, M.M. (1990). 16S rRNA sequences reveal numerous uncultured microorganisms in a natural community. Nature, 345, 63-65.
    • (1990) Nature , vol.345 , pp. 63-65
    • Ward, D.1    Weller, M.R.2    Bateson, M.M.3
  • 96
    • 73649191344 scopus 로고
    • Infective heredity of multiple drug resistance in bacteria
    • Watanabe, T. (1963). Infective heredity of multiple drug resistance in bacteria. Bacteriol. Rev., 27, 87-115,.
    • (1963) Bacteriol. Rev. , vol.27 , pp. 87-115
    • Watanabe, T.1
  • 97
    • 0029851982 scopus 로고    scopus 로고
    • Problems in measuring bacterial diversity and a possible solution
    • Watve, M.G. & Gangal, R.M. (1996). Problems in measuring bacterial diversity and a possible solution. Appl. Environ. Microbiology, 62, 4299-4301.
    • (1996) Appl. Environ. Microbiology , vol.62 , pp. 4299-4301
    • Watve, M.G.1    Gangal, R.M.2
  • 98
    • 0029077890 scopus 로고
    • Genetic diversity of desulfovibrio spp. in environmental samples analyzed by denaturing gradient gel electrophoresis of (NiFe) hydrogenase gene fragments
    • Wawer, C. & Muyzer, G. (1995). Genetic diversity of desulfovibrio spp. in environmental samples analyzed by denaturing gradient gel electrophoresis of (NiFe) hydrogenase gene fragments. Appl. Environ. Microbiology, 61, 2203-2210.
    • (1995) Appl. Environ. Microbiology , vol.61 , pp. 2203-2210
    • Wawer, C.1    Muyzer, G.2
  • 99
  • 100
    • 0002547096 scopus 로고
    • Fingerprinting bacterial soil communities using Biolog microtitre plates
    • (eds Ritz, K., Dighton, J. & Giller, K.E.). Wiley, London
    • Winding, A. (1994). Fingerprinting bacterial soil communities using Biolog microtitre plates. In: Beyond the Biomass (eds Ritz, K., Dighton, J. & Giller, K.E.). Wiley, London.
    • (1994) Beyond the Biomass
    • Winding, A.1
  • 101
    • 0345195995 scopus 로고    scopus 로고
    • Determination of microbial diversity in environmental samples: Pitfalls of PCR-based RNA analysis
    • Wintzingerode, F., Gobel, U.B. & Stackebrandt, E. (1997). Determination of microbial diversity in environmental samples: pitfalls of PCR-based RNA analysis. FEMS Microbiol. Rev., 21, 213-229.
    • (1997) FEMS Microbiol. Rev. , vol.21 , pp. 213-229
    • Wintzingerode, F.1    Gobel, U.B.2    Stackebrandt, E.3
  • 102
    • 0028784056 scopus 로고
    • Role of por size location in determining bacterial activity during predation by protozoa in soil
    • Wright, D.A., Killham, K., Glover, L.A. & Prosser, J.I. (1995). Role of por size location in determining bacterial activity during predation by protozoa in soil. Appl, Environ. Microbiology, 61, 3537-3543.
    • (1995) Appl, Environ. Microbiology , vol.61 , pp. 3537-3543
    • Wright, D.A.1    Killham, K.2    Glover, L.A.3    Prosser, J.I.4
  • 103
    • 0028160654 scopus 로고
    • Functional diversity of microbial communities: A quantitative approach
    • Zak, J.C., Willig, M.R., Moorhead, D.L. & Wildman, H.G. (1994). Functional diversity of microbial communities: a quantitative approach. Soil Biol. Biochemistry, 26, 1101-1108.
    • (1994) Soil Biol. Biochemistry , vol.26 , pp. 1101-1108
    • Zak, J.C.1    Willig, M.R.2    Moorhead, D.L.3    Wildman, H.G.4
  • 104
    • 0032412146 scopus 로고    scopus 로고
    • Microbial diversity and community structure in two different agricultural soil communities
    • Øvreås, L. & Torsvik, V. (1998). Microbial diversity and community structure in two different agricultural soil communities. Microbial Ecol., 36, 303-315.
    • (1998) Microbial Ecol. , vol.36 , pp. 303-315
    • Øvreås, L.1    Torsvik, V.2
  • 105
    • 0030805150 scopus 로고    scopus 로고
    • Distribution of bacterioplankton in Meromictic Lake Sadenvannet, as determined by denaturant gradient gel electrophoresis of PCR-amplified gene fragments coding for 16S rRNA
    • Øvreås, L., Forney, L., Daae, F.L. & Torsvik, V. (1997). Distribution of bacterioplankton in Meromictic Lake Sadenvannet, as determined by denaturant gradient gel electrophoresis of PCR-amplified gene fragments coding for 16S rRNA. Appl. Environ. Microbiology, 63, 3367-3373.
    • (1997) Appl. Environ. Microbiology , vol.63 , pp. 3367-3373
    • Øvreås, L.1    Forney, L.2    Daae, F.L.3    Torsvik, V.4
  • 106
    • 0031867816 scopus 로고    scopus 로고
    • Microbial community changes in a perturbed agricultural soil investigated by molecular and physiological approaches
    • Øvreås, L., Jensenet, S., Daae, F.L. & Torsvik, V. (1998). Microbial community changes in a perturbed agricultural soil investigated by molecular and physiological approaches. Appl. Environ. Microbiology, 64, 2739-2742.
    • (1998) Appl. Environ. Microbiology , vol.64 , pp. 2739-2742
    • Øvreås, L.1    Jensenet, S.2    Daae, F.L.3    Torsvik, V.4


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