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Volumn 66, Issue 6, 2000, Pages 2541-2547

Cloning the soil metagenome: A strategy for accessing the genetic and functional diversity of uncultured microorganisms

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; BACTERIAL GENETICS; BACTERIUM CULTURE; BIODIVERSITY; CHROMOSOME; DNA LIBRARY; ESCHERICHIA COLI; GRAM POSITIVE BACTERIUM; NONHUMAN; NUCLEOTIDE SEQUENCE; PHENOTYPE; PHYLOGENY; STRAIN DIFFERENCE;

EID: 18844481269     PISSN: 00992240     EISSN: None     Source Type: Journal    
DOI: 10.1128/AEM.66.6.2541-2547.2000     Document Type: Article
Times cited : (965)

References (34)
  • 2
    • 0028946084 scopus 로고
    • Phylogenetic identification and in situ detection of individual microbial cells without cultivation
    • Amann, R. I., W. Ludwig, and K.-H. Schleifer. 1995. Phylogenetic identification and in situ detection of individual microbial cells without cultivation. Microbiol. Rev. 59:143-169.
    • (1995) Microbiol. Rev. , vol.59 , pp. 143-169
    • Amann, R.I.1    Ludwig, W.2    Schleifer, K.-H.3
  • 3
    • 0032511167 scopus 로고    scopus 로고
    • BEN1 and ZEN1 cDNAs encoding S1-type DNases that are associated with programmed cell death in plants
    • Aoyagi, S., M. Sugiyama, and H. Fukuda. 1998. BEN1 and ZEN1 cDNAs encoding S1-type DNases that are associated with programmed cell death in plants. FEBS Lett. 429:134-138.
    • (1998) FEBS Lett. , vol.429 , pp. 134-138
    • Aoyagi, S.1    Sugiyama, M.2    Fukuda, H.3
  • 6
    • 0029046178 scopus 로고
    • Isolation and characterization of the gene encoding the surface membrane 3′-nucleotidase/nu-clease of Leishmania donovani
    • Debrabant, A., M. Gottleib, and D. M. Dwyer. 1995. Isolation and characterization of the gene encoding the surface membrane 3′-nucleotidase/nu-clease of Leishmania donovani. Mol. Biochem. Parasitol. 71:51-63.
    • (1995) Mol. Biochem. Parasitol. , vol.71 , pp. 51-63
    • Debrabant, A.1    Gottleib, M.2    Dwyer, D.M.3
  • 9
    • 0032536841 scopus 로고    scopus 로고
    • Spontaneous cAMP-dependent derepression of gene expression in stationary phase plays a role in recombinant expression instability
    • Grossman, T. H., E. K. Kawasaki, S. R. Punreddy, and M. S. Osburne. 1998. Spontaneous cAMP-dependent derepression of gene expression in stationary phase plays a role in recombinant expression instability. Gene 209:95-103.
    • (1998) Gene , vol.209 , pp. 95-103
    • Grossman, T.H.1    Kawasaki, E.K.2    Punreddy, S.R.3    Osburne, M.S.4
  • 11
    • 0032192790 scopus 로고    scopus 로고
    • Molecular biological access to the chemistry of unknown soil microbes: A new frontier for natural products
    • Handelsman, J., M. R. Rondon, S. F. Brady, J. Clardy, and R. M. Goodman. 1998. Molecular biological access to the chemistry of unknown soil microbes: a new frontier for natural products. Chem. Biol. 5:R245-R249.
    • (1998) Chem. Biol. , vol.5
    • Handelsman, J.1    Rondon, M.R.2    Brady, S.F.3    Clardy, J.4    Goodman, R.M.5
  • 12
    • 0032863699 scopus 로고    scopus 로고
    • Construction of environmental DNA libraries in Escherichia coli and screening for the presence of genes conferring utilization of 4-hydroxybutyrate
    • Henne, A., R. Daniel, R. A. Schmitz, and G. Gottschalk. 1999. Construction of environmental DNA libraries in Escherichia coli and screening for the presence of genes conferring utilization of 4-hydroxybutyrate. Appl. Environ. Microbiol. 65:3901-3907.
    • (1999) Appl. Environ. Microbiol. , vol.65 , pp. 3901-3907
    • Henne, A.1    Daniel, R.2    Schmitz, R.A.3    Gottschalk, G.4
  • 13
    • 0031662188 scopus 로고    scopus 로고
    • Impact of culture-independent studies on the emerging phylogenetic view of bacterial diversity
    • Hugenholtz, P., B. M. Goebel, and N. R. Pace. 1998. Impact of culture-independent studies on the emerging phylogenetic view of bacterial diversity. J. Bacteriol. 180:4765-4774.
    • (1998) J. Bacteriol. , vol.180 , pp. 4765-4774
    • Hugenholtz, P.1    Goebel, B.M.2    Pace, N.R.3
  • 14
    • 0029970177 scopus 로고    scopus 로고
    • Identifying microbial diversity in the natural environment: A molecular phylogenetic approach
    • Hugenholtz, P., and N. R. Pace. 1996. Identifying microbial diversity in the natural environment: a molecular phylogenetic approach. Trends Biotechnol. 14:190-197.
    • (1996) Trends Biotechnol. , vol.14 , pp. 190-197
    • Hugenholtz, P.1    Pace, N.R.2
  • 16
    • 0030868433 scopus 로고    scopus 로고
    • Diverse uncultivated bacterial groups from soils of the arid southwestern United States that are present in many geographic regions
    • Kuske, C. R., S. M. Barns, and J. D. Busch. 1997. Diverse uncultivated bacterial groups from soils of the arid southwestern United States that are present in many geographic regions. Appl. Environ. Microbiol. 63:3614-3621.
    • (1997) Appl. Environ. Microbiol. , vol.63 , pp. 3614-3621
    • Kuske, C.R.1    Barns, S.M.2    Busch, J.D.3
  • 17
    • 0029610214 scopus 로고
    • Cloning, characterization and overproduction of nuclease S1 gene (nucS) from Aspergillus oryzae
    • Lee, R. R., K. Kitamoto, O. Yamada, and C. Kumagi. 1995. Cloning, characterization and overproduction of nuclease S1 gene (nucS) from Aspergillus oryzae. Appl. Microbiol. Biotechnol. 44:425-431.
    • (1995) Appl. Microbiol. Biotechnol. , vol.44 , pp. 425-431
    • Lee, R.R.1    Kitamoto, K.2    Yamada, O.3    Kumagi, C.4
  • 19
    • 0000632797 scopus 로고
    • TnphoA: A transposon probe for protein export signals
    • Manoil, C., and J. Beckwith. 1985. TnphoA: a transposon probe for protein export signals. Proc. Natl. Acad. Sci. USA 82:8129-8133.
    • (1985) Proc. Natl. Acad. Sci. USA , vol.82 , pp. 8129-8133
    • Manoil, C.1    Beckwith, J.2
  • 20
    • 0033033720 scopus 로고    scopus 로고
    • Toward functional genomics in bacteria: Analysis of gene expression in Escherichia coli from a bacterial artificial chromosome library of Bacillus cereus
    • Rondon, M. R., S. J. Raffel, R. M. Goodman, and J. Handelsman. 1999. Toward functional genomics in bacteria: analysis of gene expression in Escherichia coli from a bacterial artificial chromosome library of Bacillus cereus. Proc. Natl. Acad. Sci. USA 96:6451-6455.
    • (1999) Proc. Natl. Acad. Sci. USA , vol.96 , pp. 6451-6455
    • Rondon, M.R.1    Raffel, S.J.2    Goodman, R.M.3    Handelsman, J.4
  • 21
    • 0023127806 scopus 로고
    • Universal chemical assay for the detection and determination of siderophores
    • Schwyn, B., and J. B. Neilands. 1987. Universal chemical assay for the detection and determination of siderophores. Anal. Biochem. 160:47-56.
    • (1987) Anal. Biochem. , vol.160 , pp. 47-56
    • Schwyn, B.1    Neilands, J.B.2
  • 22
    • 0030690924 scopus 로고    scopus 로고
    • A study of iterative type II polyketide synthases, using bacterial genes cloned from soil DNA: A means to access and use genes from uncultured microorganisms
    • Seow, K.-T., G. Meurer, M. Gerlitz, E. Wendt-Pienkowski, C. R. Hutchinson, and J. Davies. 1997. A study of iterative type II polyketide synthases, using bacterial genes cloned from soil DNA: a means to access and use genes from uncultured microorganisms. J. Bacteriol. 179:7360-7368.
    • (1997) J. Bacteriol. , vol.179 , pp. 7360-7368
    • Seow, K.-T.1    Meurer, G.2    Gerlitz, M.3    Wendt-Pienkowski, E.4    Hutchinson, C.R.5    Davies, J.6
  • 23
    • 0026703169 scopus 로고
    • Cloning and stable maintenance of 300-kilobase-pair fragments of human DNA in Escherichia coli using an F-factor-based vector
    • Shizuya, H., B. Birren, U.-J. Kim, V. Mancino, T. Slepak, Y. Tachiri, and M. Simon. 1992. Cloning and stable maintenance of 300-kilobase-pair fragments of human DNA in Escherichia coli using an F-factor-based vector. Proc. Natl. Acad. Sci. USA 89:8794-8797.
    • (1992) Proc. Natl. Acad. Sci. USA , vol.89 , pp. 8794-8797
    • Shizuya, H.1    Birren, B.2    Kim, U.-J.3    Mancino, V.4    Slepak, T.5    Tachiri, Y.6    Simon, M.7
  • 24
    • 0031300142 scopus 로고    scopus 로고
    • Recombinant approaches for accessing biodiversity
    • Short, J. M. 1997. Recombinant approaches for accessing biodiversity. Nat. Biotechnol. 15:1322-1323.
    • (1997) Nat. Biotechnol. , vol.15 , pp. 1322-1323
    • Short, J.M.1
  • 25
    • 0021779934 scopus 로고
    • Measurement of in situ activities of nonphotosynthetic microorganisms in aquatic and terrestrial habitats
    • Staley, J. T., and A. Konopka. 1985. Measurement of in situ activities of nonphotosynthetic microorganisms in aquatic and terrestrial habitats. Annu. Rev. Microbiol. 39:321-346.
    • (1985) Annu. Rev. Microbiol. , vol.39 , pp. 321-346
    • Staley, J.T.1    Konopka, A.2
  • 26
    • 0030023659 scopus 로고    scopus 로고
    • Characterization of uncultivated prokaryotes: Isolation and analysis of a 40-kilobase-pair genome fragment from a planktonic marine archaeon
    • Stein, J. L., T. L. Marsh, K. Y. Wu, H. Shizuya, and E. F. DeLong. 1996. Characterization of uncultivated prokaryotes: isolation and analysis of a 40-kilobase-pair genome fragment from a planktonic marine archaeon. J. Bacteriol. 178:591-599.
    • (1996) J. Bacteriol. , vol.178 , pp. 591-599
    • Stein, J.L.1    Marsh, T.L.2    Wu, K.Y.3    Shizuya, H.4    DeLong, E.F.5
  • 27
    • 0032574728 scopus 로고    scopus 로고
    • Evolution of rhizobia by acquisition of a 500-kb symbiosis island that integrates into a phe-tRNA gene
    • Sullivan, J. T., and C. W. Ronson. 1998. Evolution of rhizobia by acquisition of a 500-kb symbiosis island that integrates into a phe-tRNA gene. Proc. Natl. Acad. Sci. USA 95:5145-5149.
    • (1998) Proc. Natl. Acad. Sci. USA , vol.95 , pp. 5145-5149
    • Sullivan, J.T.1    Ronson, C.W.2
  • 28
    • 0030497690 scopus 로고    scopus 로고
    • Total bacterial diversity in soil and sediment communities - A review
    • Torsvik, V., R. Sorheim, and J. Goksøyr. 1996. Total bacterial diversity in soil and sediment communities - a review. J. Ind. Microbiol. 17:170-178.
    • (1996) J. Ind. Microbiol. , vol.17 , pp. 170-178
    • Torsvik, V.1    Sorheim, R.2    Goksøyr, J.3
  • 29
    • 0026656738 scopus 로고
    • Secondary metabolism, inventive evolution and biochemical diversity - A review
    • Vining, L. C. 1992. Secondary metabolism, inventive evolution and biochemical diversity - a review. Gene 115:135-140.
    • (1992) Gene , vol.115 , pp. 135-140
    • Vining, L.C.1
  • 30
    • 0003338719 scopus 로고    scopus 로고
    • Phosphorus assimilation and control of the phosphate regulon
    • F. C. Neidhardt (ed.). ASM Press, Washington, D.C.
    • Wanner, B. L. 1996. Phosphorus assimilation and control of the phosphate regulon, p. 1357-1381. In F. C. Neidhardt (ed.), Escherichia coli and Salmonella: cellular and molecular biology, 2nd ed., vol. 1. ASM Press, Washington, D.C.
    • (1996) Escherichia Coli and Salmonella: Cellular and Molecular Biology, 2nd Ed. , vol.1 , pp. 1357-1381
    • Wanner, B.L.1
  • 31
    • 0025366456 scopus 로고
    • 16S rRNA sequences reveal numerous uncultured microorganisms in a natural community
    • Ward, D. M., R. Weller, and M. M. Bateson. 1990. 16S rRNA sequences reveal numerous uncultured microorganisms in a natural community. Nature 345:63-65.
    • (1990) Nature , vol.345 , pp. 63-65
    • Ward, D.M.1    Weller, R.2    Bateson, M.M.3
  • 33
    • 0028567284 scopus 로고
    • Construction and characterization of a bacterial artificial chromosome library of Sorghum bicolor
    • Woo, S.-S., J. Jiang, B. S. Gill, A. H. Paterson, and R. A. Wing. 1994. Construction and characterization of a bacterial artificial chromosome library of Sorghum bicolor. Nucleic Acids Res. 22:4922-4931.
    • (1994) Nucleic Acids Res. , vol.22 , pp. 4922-4931
    • Woo, S.-S.1    Jiang, J.2    Gill, B.S.3    Paterson, A.H.4    Wing, R.A.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.