-
1
-
-
0005123736
-
Life sentences: Ontology recapitulates philology
-
Brenner S. Life sentences: ontology recapitulates philology. The Scientist. 12:2002;16.
-
(2002)
The Scientist
, vol.12
, pp. 16
-
-
Brenner, S.1
-
2
-
-
0036081347
-
MIPS: A database for genomes and protein sequences
-
Mewes H.W., Frishman D., Guldener U., Mannhaupt G., Mayer K., Mokrejs M., Morgenstern B., Munsterkotter M., Rudd S., Weil B. MIPS: a database for genomes and protein sequences. Nucleic Acids. Res. 30(1):2002;31-34.
-
(2002)
Nucleic Acids. Res.
, vol.30
, Issue.1
, pp. 31-34
-
-
Mewes, H.W.1
Frishman, D.2
Guldener, U.3
Mannhaupt, G.4
Mayer, K.5
Mokrejs, M.6
Morgenstern, B.7
Munsterkotter, M.8
Rudd, S.9
Weil, B.10
-
3
-
-
0034785443
-
Identifying regulatory networks by combinatorial analysis of promoter elements
-
Pilpel Y., Sudarsanam P., Church G.M. Identifying regulatory networks by combinatorial analysis of promoter elements. Nat. Genet. 29(2):2001;153-159.
-
(2001)
Nat. Genet.
, vol.29
, Issue.2
, pp. 153-159
-
-
Pilpel, Y.1
Sudarsanam, P.2
Church, G.M.3
-
4
-
-
0034628508
-
A comprehensive analysis of protein-protein interactions in Saccharomyces cerevisiae
-
Uetz P., Giot L., Cagney G., Mansfield T.A., Judson R.S., Knight J.R., Lockshon D., Narayan V., Srinivasan M., Pochart P., Qureshi-Emili A., Li Y., Godwin B., Conover D., Kalbfleisch T., Vijayadamodar G., Yang M., Johnston M., Fields S., Rothberg J.M. A comprehensive analysis of protein-protein interactions in Saccharomyces cerevisiae. Nature. 403(6770):2000;623-627.
-
(2000)
Nature
, vol.403
, Issue.6770
, pp. 623-627
-
-
Uetz, P.1
Giot, L.2
Cagney, G.3
Mansfield, T.A.4
Judson, R.S.5
Knight, J.R.6
Lockshon, D.7
Narayan, V.8
Srinivasan, M.9
Pochart, P.10
Qureshi-Emili, A.11
Li, Y.12
Godwin, B.13
Conover, D.14
Kalbfleisch, T.15
Vijayadamodar, G.16
Yang, M.17
Johnston, M.18
Fields, S.19
Rothberg, J.M.20
more..
-
5
-
-
0037050004
-
Systematic identification of protein complexes in Saccharomyces cerevisiae by mass spectrometry
-
Ho Y., Gruhler A., Heilbut A., Bader G.D., Moore L., Adams S.L., Millar A., Taylor P., Bennett K., Boutilier K., Yang L., Wolting C., Donaldson I., Schandorff S., Shewnarane J., Vo M., Taggart J., Goudreault M., Muskat B., Alfarano C., Dewar D., Lin Z., Michalickova K., Willems A.R., Sassi H., Nielsen P.A., Rasmussen K.J., Andersen J.R., Johansen L.E., Hansen L.H., Jespersen H., Podtelejnikov A., Nielsen E., Crawford J., Poulsen V., Sorensen B.D., Matthiesen J., Hendrickson R.C., Gleeson F., Pawson T., Moran M.F., Durocher D., Mann M., Hogue C.W., Figeys D., Tyers M. Systematic identification of protein complexes in Saccharomyces cerevisiae by mass spectrometry. Nature. 415(6868):2002;180-183.
-
(2002)
Nature
, vol.415
, Issue.6868
, pp. 180-183
-
-
Ho, Y.1
Gruhler, A.2
Heilbut, A.3
Bader, G.D.4
Moore, L.5
Adams, S.L.6
Millar, A.7
Taylor, P.8
Bennett, K.9
Boutilier, K.10
Yang, L.11
Wolting, C.12
Donaldson, I.13
Schandorff, S.14
Shewnarane, J.15
Vo, M.16
Taggart, J.17
Goudreault, M.18
Muskat, B.19
Alfarano, C.20
Dewar, D.21
Lin, Z.22
Michalickova, K.23
Willems, A.R.24
Sassi, H.25
Nielsen, P.A.26
Rasmussen, K.J.27
Andersen, J.R.28
Johansen, L.E.29
Hansen, L.H.30
Jespersen, H.31
Podtelejnikov, A.32
Nielsen, E.33
Crawford, J.34
Poulsen, V.35
Sorensen, B.D.36
Matthiesen, J.37
Hendrickson, R.C.38
Gleeson, F.39
Pawson, T.40
Moran, M.F.41
Durocher, D.42
Mann, M.43
Hogue, C.W.44
Figeys, D.45
Tyers, M.46
more..
-
6
-
-
0037050026
-
Functional organization of the yeast proteome by systematic analysis of protein complexes
-
Gavin A.C., Bosche M., Krause R., Grandi P., Marzioch M., Bauer A., Schultz J., Rick J.M., Michon A.M., Cruciat C.M., Remor M., Hofert C., Schelder M., Brajenovic M., Ruffner H., Merino A., Klein K., Hudak M., Dickson D., Rudi T., Gnau V., Bauch A., Bastuck S., Huhse B., Leutwein C., Heurtier M.A., Copley R.R., Edelmann A., Querfurth E., Rybin V., Drewes G., Raida M., Bouwmeester T., Bork P., Seraphin B., Kuster B., Neubauer G., Superti-Furga G. Functional organization of the yeast proteome by systematic analysis of protein complexes. Nature. 415(6868):2002;141-147.
-
(2002)
Nature
, vol.415
, Issue.6868
, pp. 141-147
-
-
Gavin, A.C.1
Bosche, M.2
Krause, R.3
Grandi, P.4
Marzioch, M.5
Bauer, A.6
Schultz, J.7
Rick, J.M.8
Michon, A.M.9
Cruciat, C.M.10
Remor, M.11
Hofert, C.12
Schelder, M.13
Brajenovic, M.14
Ruffner, H.15
Merino, A.16
Klein, K.17
Hudak, M.18
Dickson, D.19
Rudi, T.20
Gnau, V.21
Bauch, A.22
Bastuck, S.23
Huhse, B.24
Leutwein, C.25
Heurtier, M.A.26
Copley, R.R.27
Edelmann, A.28
Querfurth, E.29
Rybin, V.30
Drewes, G.31
Raida, M.32
Bouwmeester, T.33
Bork, P.34
Seraphin, B.35
Kuster, B.36
Neubauer, G.37
Superti-Furga, G.38
more..
-
8
-
-
0035962635
-
When the SWI/SNF complex remodels ... the cell cycle
-
Muchardt C., Yaniv M. When the SWI/SNF complex remodels ... the cell cycle. Oncogene. 20(24):2001;3067-3075.
-
(2001)
Oncogene
, vol.20
, Issue.24
, pp. 3067-3075
-
-
Muchardt, C.1
Yaniv, M.2
-
9
-
-
0037085292
-
Compensation of BRG-1 function by Brm. Insight into the role of the core SWI/SNF subunits in retinoblastoma tumor suppressor signaling
-
Strobeck M.W., Reisman D.N., Gunawardena R.W., Betz B.L., Angus S.P., Knudsen K.E., Kowalik T.F., Weissman B.E., Knudsen E.S. Compensation of BRG-1 function by Brm. Insight into the role of the core SWI/SNF subunits in retinoblastoma tumor suppressor signaling. J. Biol. Chem. 277(7):2002;4782-4789.
-
(2002)
J. Biol. Chem.
, vol.277
, Issue.7
, pp. 4782-4789
-
-
Strobeck, M.W.1
Reisman, D.N.2
Gunawardena, R.W.3
Betz, B.L.4
Angus, S.P.5
Knudsen, K.E.6
Kowalik, T.F.7
Weissman, B.E.8
Knudsen, E.S.9
-
10
-
-
0035810142
-
Activity of a specific inhibitor of the BCR-ABL tyrosine kinase in the blast crisis of chronic myeloid leukemia and acute lymphoblastic leukemia with the Philadelphia chromosome
-
Druker B.J., Sawyers C.L., Kantarjian H., Resta D.J., Reese S.F., Ford J.M., Capdeville R., Talpaz M. Activity of a specific inhibitor of the BCR-ABL tyrosine kinase in the blast crisis of chronic myeloid leukemia and acute lymphoblastic leukemia with the Philadelphia chromosome. N. Engl. J. Med. 344(14):2001;1038-1042.
-
(2001)
N. Engl. J. Med.
, vol.344
, Issue.14
, pp. 1038-1042
-
-
Druker, B.J.1
Sawyers, C.L.2
Kantarjian, H.3
Resta, D.J.4
Reese, S.F.5
Ford, J.M.6
Capdeville, R.7
Talpaz, M.8
-
11
-
-
0035962636
-
Transcription therapy for cancer
-
Pandolfi P.P. Transcription therapy for cancer. Oncogene. 20(24):2001;3116-3127.
-
(2001)
Oncogene
, vol.20
, Issue.24
, pp. 3116-3127
-
-
Pandolfi, P.P.1
-
12
-
-
0036532225
-
Biotechnologies and therapeutics: Chromatin as a target
-
Reik A., Gregory P.D., Urnov F.D. Biotechnologies and therapeutics: chromatin as a target. Curr. Opin. Genet. Dev. 12:2002;233-242.
-
(2002)
Curr. Opin. Genet. Dev.
, vol.12
, pp. 233-242
-
-
Reik, A.1
Gregory, P.D.2
Urnov, F.D.3
-
13
-
-
0036023939
-
Designed transcription factors as structural, functional, and therapeutic probes of chromatin in vivo
-
in press
-
Urnov FD, Rebar EJ, Reik A, Pandolfi PP. Designed transcription factors as structural, functional, and therapeutic probes of chromatin in vivo. EMBO Reports, 2002, in press.
-
(2002)
EMBO Reports
-
-
Urnov, F.D.1
Rebar, E.J.2
Reik, A.3
Pandolfi, P.P.4
-
15
-
-
0032996623
-
C-Myc regulates cyclin D-Cdk4 and -Cdk6 activity but affects cell cycle progression at multiple independent points
-
Mateyak M.K., Obaya A.J., Sedivy J.M. c-Myc regulates cyclin D-Cdk4 and -Cdk6 activity but affects cell cycle progression at multiple independent points. Mol. Cell Biol. 19(7):1999;4672-4683.
-
(1999)
Mol. Cell Biol.
, vol.19
, Issue.7
, pp. 4672-4683
-
-
Mateyak, M.K.1
Obaya, A.J.2
Sedivy, J.M.3
-
16
-
-
17944377034
-
Generation of stable mRNA fragments and translation of N-truncated proteins induced by antisense oligodeoxynucleotides
-
Thoma C., Hasselblatt P., Kock J., Chang S.F., Hockenjos B., Will H., Hentze M.W., Blum H.E., von Weizsacker F., Offensperger W.B. Generation of stable mRNA fragments and translation of N-truncated proteins induced by antisense oligodeoxynucleotides. Mol. Cell. 8(4):2001;865-872.
-
(2001)
Mol. Cell
, vol.8
, Issue.4
, pp. 865-872
-
-
Thoma, C.1
Hasselblatt, P.2
Kock, J.3
Chang, S.F.4
Hockenjos, B.5
Will, H.6
Hentze, M.W.7
Blum, H.E.8
Von Weizsacker, F.9
Offensperger, W.B.10
-
18
-
-
0034840003
-
Synthesis, analysis, purification, and intracellular delivery of peptide nucleic acids
-
Braasch D.A., Corey D.R. Synthesis, analysis, purification, and intracellular delivery of peptide nucleic acids. Methods. 23(2):2001;97-107.
-
(2001)
Methods
, vol.23
, Issue.2
, pp. 97-107
-
-
Braasch, D.A.1
Corey, D.R.2
-
19
-
-
0034852682
-
Sequence-specific targeting of duplex DNA by peptide nucleic acids via triplex strand invasion
-
Demidov V.V., Frank-Kamenetskii M.D. Sequence-specific targeting of duplex DNA by peptide nucleic acids via triplex strand invasion. Methods. 23(2):2001;108-122.
-
(2001)
Methods
, vol.23
, Issue.2
, pp. 108-122
-
-
Demidov, V.V.1
Frank-Kamenetskii, M.D.2
-
20
-
-
0034830898
-
Molecular recognition of DNA by small molecules
-
Dervan P.B. Molecular recognition of DNA by small molecules. Bioorg. Med. Chem. 9(9):2001;2215-2235.
-
(2001)
Bioorg. Med. Chem.
, vol.9
, Issue.9
, pp. 2215-2235
-
-
Dervan, P.B.1
-
21
-
-
0025773296
-
Zinc finger-DNA recognition: Crystal structure of a Zif268-DNA complex at 2.1 A
-
Pavletich N.P., Pabo C.O. Zinc finger-DNA recognition: crystal structure of a Zif268-DNA complex at 2.1 A. Science. 252(5007):1991;809-817.
-
(1991)
Science
, vol.252
, Issue.5007
, pp. 809-817
-
-
Pavletich, N.P.1
Pabo, C.O.2
-
22
-
-
0034923498
-
Design and Selection of Novel Cys2-His2 zinc finger proteins
-
Pabo C.O., Peisach E., Grant R.A. Design and Selection of Novel Cys2-His2 zinc finger proteins. Annu. Rev. Biochem. 70:2001;313-340.
-
(2001)
Annu. Rev. Biochem.
, vol.70
, pp. 313-340
-
-
Pabo, C.O.1
Peisach, E.2
Grant, R.A.3
-
23
-
-
0034811833
-
Concerted evolution of structure and function in a miniature protein
-
Chin J.W., Schepartz A. Concerted evolution of structure and function in a miniature protein. J. Am. Chem. Soc. 123(12):2001;2929-2930.
-
(2001)
J. Am. Chem. Soc.
, vol.123
, Issue.12
, pp. 2929-2930
-
-
Chin, J.W.1
Schepartz, A.2
-
24
-
-
0036168937
-
Engineering polydactyl zinc finger transcription factors
-
Beerli R.R., Barbas C.F. III Engineering polydactyl zinc finger transcription factors. Nat. Biotechnol. 20(2):2002;135-141.
-
(2002)
Nat. Biotechnol.
, vol.20
, Issue.2
, pp. 135-141
-
-
Beerli, R.R.1
Barbas C.F. III2
-
25
-
-
0026673679
-
Sequence discrimination by alternatively spliced isoforms of a DNA binding zinc finger domain
-
Gogos J.A., Hsu T., Bolton J., Kafatos F.C. Sequence discrimination by alternatively spliced isoforms of a DNA binding zinc finger domain. Science. 257(5078):1992;1951-1955.
-
(1992)
Science
, vol.257
, Issue.5078
, pp. 1951-1955
-
-
Gogos, J.A.1
Hsu, T.2
Bolton, J.3
Kafatos, F.C.4
-
26
-
-
0028271865
-
Identification of potential target genes for Adr1p through characterization of essential nucleotides in UAS1
-
Cheng C., Kacherovsky N., Dombek K.M., Camier S., Thukral S.K., Rhim E., Young E.T. Identification of potential target genes for Adr1p through characterization of essential nucleotides in UAS1. Mol. Cell Biol. 14(6):1994;3842-3852.
-
(1994)
Mol. Cell Biol.
, vol.14
, Issue.6
, pp. 3842-3852
-
-
Cheng, C.1
Kacherovsky, N.2
Dombek, K.M.3
Camier, S.4
Thukral, S.K.5
Rhim, E.6
Young, E.T.7
-
27
-
-
0028241701
-
The carboxyl domain of zinc fingers of the Evi-1 myeloid transforming gene binds a consensus sequence of GAAGATGAG
-
Funabiki T., Kreider B.L., Ihle J.N. The carboxyl domain of zinc fingers of the Evi-1 myeloid transforming gene binds a consensus sequence of GAAGATGAG. Oncogene. 9(6):1994;1575-1881.
-
(1994)
Oncogene
, vol.9
, Issue.6
, pp. 1575-1881
-
-
Funabiki, T.1
Kreider, B.L.2
Ihle, J.N.3
-
28
-
-
0027232223
-
Four of the seven zinc fingers of the Evi-1 myeloid-transforming gene are required for sequence-specific binding to GA(C/T)AAGA(T/C)AAGATAA
-
Delwel R., Funabiki T., Kreider B.L., Morishita K., Ihle J.N. Four of the seven zinc fingers of the Evi-1 myeloid-transforming gene are required for sequence-specific binding to GA(C/T)AAGA(T/C)AAGATAA. Mol. Cell Biol. 13(7):1993;4291-4300.
-
(1993)
Mol. Cell Biol.
, vol.13
, Issue.7
, pp. 4291-4300
-
-
Delwel, R.1
Funabiki, T.2
Kreider, B.L.3
Morishita, K.4
Ihle, J.N.5
-
29
-
-
0028809646
-
DNA binding through distinct domains of zinc finger homeodomain protein AREB6 has different effects on gene transcription
-
Ikeda K., Kawakami K. DNA binding through distinct domains of zinc finger homeodomain protein AREB6 has different effects on gene transcription. Eur. J. Biochem. 233(1):1995;73-82.
-
(1995)
Eur. J. Biochem.
, vol.233
, Issue.1
, pp. 73-82
-
-
Ikeda, K.1
Kawakami, K.2
-
30
-
-
0028168794
-
The delta-crystallin enhancer-binding protein delta EF1 is a repressor of E2-box-mediated gene activation
-
Sekido R., Murai K., Funahashi J., Kamachi Y., Fujisawa-Sehara A., Nabeshima Y., Kondoh H. The delta-crystallin enhancer-binding protein delta EF1 is a repressor of E2-box-mediated gene activation. Mol. Cell Biol. 14(9):1994;5692-5700.
-
(1994)
Mol. Cell Biol.
, vol.14
, Issue.9
, pp. 5692-5700
-
-
Sekido, R.1
Murai, K.2
Funahashi, J.3
Kamachi, Y.4
Fujisawa-Sehara, A.5
Nabeshima, Y.6
Kondoh, H.7
-
31
-
-
0025331709
-
Target detection assay (TDA): A versatile procedure to determine DNA binding sites as demonstrated on SP1 protein
-
Thiesen H.J., Bach C. Target detection assay (TDA): a versatile procedure to determine DNA binding sites as demonstrated on SP1 protein. Nucleic Acids Res. 18(11):1990;3203-3209.
-
(1990)
Nucleic Acids Res.
, vol.18
, Issue.11
, pp. 3203-3209
-
-
Thiesen, H.J.1
Bach, C.2
-
32
-
-
0028900074
-
DNA-binding specificity of NGFI-A and related zinc finger transcription factors
-
Swirnoff A.H., Milbrandt J. DNA-binding specificity of NGFI-A and related zinc finger transcription factors. Mol. Cell Biol. 15(4):1995;2275-2287.
-
(1995)
Mol. Cell Biol.
, vol.15
, Issue.4
, pp. 2275-2287
-
-
Swirnoff, A.H.1
Milbrandt, J.2
-
33
-
-
0027423758
-
Crystal structure of a five-finger GLI-DNA complex: New perspectives on zinc fingers
-
Pavletich N.P., Pabo C.O. Crystal structure of a five-finger GLI-DNA complex: new perspectives on zinc fingers. Science. 261(5129):1993;1701-1707.
-
(1993)
Science
, vol.261
, Issue.5129
, pp. 1701-1707
-
-
Pavletich, N.P.1
Pabo, C.O.2
-
34
-
-
0027749348
-
The crystal structure of a two zinc finger peptide reveals an extension to the rules for zinc finger/DNA recognition
-
Fairall L., Schwabe J.W., Chapman L., Finch J.T., Rhodes D. The crystal structure of a two zinc finger peptide reveals an extension to the rules for zinc finger/DNA recognition. Nature. 366(6454):1993;483-487.
-
(1993)
Nature
, vol.366
, Issue.6454
, pp. 483-487
-
-
Fairall, L.1
Schwabe, J.W.2
Chapman, L.3
Finch, J.T.4
Rhodes, D.5
-
35
-
-
0030459422
-
Cocrystal structure of YY1 bound to the adeno-associated virus P5 initiator
-
Houbaviy H.B., Usheva A., Shenk T., Burley S.K. Cocrystal structure of YY1 bound to the adeno-associated virus P5 initiator. Proc. Natl. Acad. Sci. U.S.A. 93(24):1996;13577-13582.
-
(1996)
Proc. Natl. Acad. Sci. U.S.A.
, vol.93
, Issue.24
, pp. 13577-13582
-
-
Houbaviy, H.B.1
Usheva, A.2
Shenk, T.3
Burley, S.K.4
-
36
-
-
0031576363
-
Solution structure of the first three zinc fingers of TFIIIA bound to the cognate DNA sequence: Determinants of affinity and sequence specificity
-
Wuttke D.S., Foster M.P., Case D.A., Gottesfeld J.M., Wright P.E. Solution structure of the first three zinc fingers of TFIIIA bound to the cognate DNA sequence: determinants of affinity and sequence specificity. J. Mol. Biol. 273(1):1997;183-206.
-
(1997)
J. Mol. Biol.
, vol.273
, Issue.1
, pp. 183-206
-
-
Wuttke, D.S.1
Foster, M.P.2
Case, D.A.3
Gottesfeld, J.M.4
Wright, P.E.5
-
37
-
-
0032539846
-
Differing roles for zinc fingers in DNA recognition: Structure of a six-finger transcription factor IIIA complex
-
Nolte R.T., Conlin R.M., Harrison S.C., Brown R.S. Differing roles for zinc fingers in DNA recognition: structure of a six-finger transcription factor IIIA complex. Proc. Natl. Acad. Sci. U.S.A. 95(6):1998;2938-2943.
-
(1998)
Proc. Natl. Acad. Sci. U.S.A.
, vol.95
, Issue.6
, pp. 2938-2943
-
-
Nolte, R.T.1
Conlin, R.M.2
Harrison, S.C.3
Brown, R.S.4
-
38
-
-
0030587774
-
Zif268 protein-DNA complex refined at 1.6 A: A model system for understanding zinc finger-DNA interactions
-
Elrod-Erickson M., Rould M.A., Nekludova L., Pabo C.O. Zif268 protein-DNA complex refined at 1.6 A: a model system for understanding zinc finger-DNA interactions. Structure. 4(10):1996;1171-1180.
-
(1996)
Structure
, vol.4
, Issue.10
, pp. 1171-1180
-
-
Elrod-Erickson, M.1
Rould, M.A.2
Nekludova, L.3
Pabo, C.O.4
-
39
-
-
0032522662
-
High-resolution structures of variant Zif268-DNA complexes: Implications for understanding zinc finger-DNA recognition
-
Elrod-Erickson M., Benson T.E., Pabo C.O. High-resolution structures of variant Zif268-DNA complexes: implications for understanding zinc finger-DNA recognition. Structure. 6(4):1998;451-464.
-
(1998)
Structure
, vol.6
, Issue.4
, pp. 451-464
-
-
Elrod-Erickson, M.1
Benson, T.E.2
Pabo, C.O.3
-
40
-
-
0033917833
-
Regulation of the MDR1 gene by transcriptional repressors selected using peptide combinatorial libraries
-
Bartsevich V.V., Juliano R.L. Regulation of the MDR1 gene by transcriptional repressors selected using peptide combinatorial libraries. Mol. Pharmacol. 58(1):2000;1-10.
-
(2000)
Mol. Pharmacol.
, vol.58
, Issue.1
, pp. 1-10
-
-
Bartsevich, V.V.1
Juliano, R.L.2
-
41
-
-
0031053362
-
A general strategy for selecting high-affinity zinc finger proteins for diverse DNA target sites
-
Greisman H.A., Pabo C.O. A general strategy for selecting high-affinity zinc finger proteins for diverse DNA target sites. Science. 275(5300):1997;657-661.
-
(1997)
Science
, vol.275
, Issue.5300
, pp. 657-661
-
-
Greisman, H.A.1
Pabo, C.O.2
-
42
-
-
0034652141
-
Positive and negative regulation of endogenous genes by designed transcription factors
-
Beerli R.R., Dreier B., Barbas C.F. III Positive and negative regulation of endogenous genes by designed transcription factors. Proc. Natl. Acad. Sci. U.S.A. 97(4):2000;1495-1500.
-
(2000)
Proc. Natl. Acad. Sci. U.S.A.
, vol.97
, Issue.4
, pp. 1495-1500
-
-
Beerli, R.R.1
Dreier, B.2
Barbas C.F. III3
-
43
-
-
0034602243
-
Insights into the molecular recognition of the 5′-GNN-3′ family of DNA sequences by zinc finger domains [in process citation]
-
Dreier B., Segal D.J., Barbas C.F. III Insights into the molecular recognition of the 5′-GNN-3′ family of DNA sequences by zinc finger domains [in process citation]. J. Mol. Biol. 303(4):2000;489-502.
-
(2000)
J. Mol. Biol.
, vol.303
, Issue.4
, pp. 489-502
-
-
Dreier, B.1
Segal, D.J.2
Barbas C.F. III3
-
44
-
-
0027401045
-
Use of a zinc finger consensus sequence framework and specificity rules to design specific DNA binding proteins
-
Desjarlais J.R., Berg J.M. Use of a zinc finger consensus sequence framework and specificity rules to design specific DNA binding proteins. Proc. Natl. Acad. Sci. U.S.A. 90(6):1993;2256-2260.
-
(1993)
Proc. Natl. Acad. Sci. U.S.A.
, vol.90
, Issue.6
, pp. 2256-2260
-
-
Desjarlais, J.R.1
Berg, J.M.2
-
45
-
-
0028046895
-
Selection of DNA binding sites for zinc fingers using rationally randomized DNA reveals coded interactions
-
Choo Y., Klug A. Selection of DNA binding sites for zinc fingers using rationally randomized DNA reveals coded interactions. Proc. Natl. Acad. Sci. U.S.A. 91(23):1994;11168-11172.
-
(1994)
Proc. Natl. Acad. Sci. U.S.A.
, vol.91
, Issue.23
, pp. 11168-11172
-
-
Choo, Y.1
Klug, A.2
-
46
-
-
0034672044
-
A novel four zinc finger protein targeted against p190(BcrAbl) fusion oncogene cDNA: Utilization of zinc finger recognition codes
-
McNamara A.R., Ford K.G. A novel four zinc finger protein targeted against p190(BcrAbl) fusion oncogene cDNA: utilization of zinc finger recognition codes. Nucleic Acids Res. 28(24):2000;4865-4872.
-
(2000)
Nucleic Acids Res.
, vol.28
, Issue.24
, pp. 4865-4872
-
-
McNamara, A.R.1
Ford, K.G.2
-
47
-
-
0034089616
-
The artificial zinc finger coding gene 'Jazz' binds the utrophin promoter and activates transcription
-
Corbi N., Libri V., Fanciulli M., Tinsley J.M., Davies K.E., Passananti C. The artificial zinc finger coding gene 'Jazz' binds the utrophin promoter and activates transcription. Gene. Ther. 7(12):2000;1076-1083.
-
(2000)
Gene. Ther.
, vol.7
, Issue.12
, pp. 1076-1083
-
-
Corbi, N.1
Libri, V.2
Fanciulli, M.3
Tinsley, J.M.4
Davies, K.E.5
Passananti, C.6
-
48
-
-
0034721877
-
Synthetic zinc finger transcription factor action at an endogenous chromosomal site. Activation of the human erythropoietin gene
-
Zhang L., Spratt S.K., Liu Q., Johnstone B., Qi H., Raschke E.E., Jamieson A.C., Rebar E.J., Wolffe A.P., Case C.C. Synthetic zinc finger transcription factor action at an endogenous chromosomal site. Activation of the human erythropoietin gene. J. Biol. Chem. 275(43):2000;33850-33860.
-
(2000)
J. Biol. Chem.
, vol.275
, Issue.43
, pp. 33850-33860
-
-
Zhang, L.1
Spratt, S.K.2
Liu, Q.3
Johnstone, B.4
Qi, H.5
Raschke, E.E.6
Jamieson, A.C.7
Rebar, E.J.8
Wolffe, A.P.9
Case, C.C.10
-
49
-
-
0035815697
-
Regulation of an endogenous locus using a panel of designed zinc finger proteins targeted to accessible chromatin regions. Activation of vascular endothelial growth factor A
-
Liu P.Q., Rebar E.J., Zhang L., Liu Q., Jamieson A.C., Liang Y., Qi H., Li P.X., Chen B., Mendel M.C., Zhong X., Lee Y.L., Eisenberg S.P., Spratt S.K., Case C.C., Wolffe A.P. Regulation of an endogenous locus using a panel of designed zinc finger proteins targeted to accessible chromatin regions. Activation of vascular endothelial growth factor A. J. Biol. Chem. 276(14):2001;11323-11334.
-
(2001)
J. Biol. Chem.
, vol.276
, Issue.14
, pp. 11323-11334
-
-
Liu, P.Q.1
Rebar, E.J.2
Zhang, L.3
Liu, Q.4
Jamieson, A.C.5
Liang, Y.6
Qi, H.7
Li, P.X.8
Chen, B.9
Mendel, M.C.10
Zhong, X.11
Lee, Y.L.12
Eisenberg, S.P.13
Spratt, S.K.14
Case, C.C.15
Wolffe, A.P.16
-
50
-
-
0026742626
-
Toward rules relating zinc finger protein sequences and DNA binding site preferences
-
Desjarlais J.R., Berg J.M. Toward rules relating zinc finger protein sequences and DNA binding site preferences. Proc. Natl. Acad. Sci. U.S.A. 89(16):1992;7345-7349.
-
(1992)
Proc. Natl. Acad. Sci. U.S.A.
, vol.89
, Issue.16
, pp. 7345-7349
-
-
Desjarlais, J.R.1
Berg, J.M.2
-
51
-
-
0026891516
-
Redesigning the DNA-binding specificity of a zinc finger protein: A data base-guided approach
-
Desjarlais J.R., Berg J.M. Redesigning the DNA-binding specificity of a zinc finger protein: a data base-guided approach. Proteins. 13(3):1992;272.
-
(1992)
Proteins
, vol.13
, Issue.3
, pp. 272
-
-
Desjarlais, J.R.1
Berg, J.M.2
-
52
-
-
0028081691
-
Length-encoded multiplex binding site determination: Application to zinc finger proteins
-
Desjarlais J.R., Berg J.M. Length-encoded multiplex binding site determination: application to zinc finger proteins. Proc. Natl. Acad. Sci. U.S.A. 91(23):1994;11099-11103.
-
(1994)
Proc. Natl. Acad. Sci. U.S.A.
, vol.91
, Issue.23
, pp. 11099-11103
-
-
Desjarlais, J.R.1
Berg, J.M.2
-
53
-
-
0026718890
-
Mutations in the zinc fingers of ADR1 that change the specificity of DNA binding and transactivation
-
Thukral S.K., Morrison M.L., Young E.T. Mutations in the zinc fingers of ADR1 that change the specificity of DNA binding and transactivation. Mol. Cell Biol. 12(6):1992;2784-2792.
-
(1992)
Mol. Cell Biol.
, vol.12
, Issue.6
, pp. 2784-2792
-
-
Thukral, S.K.1
Morrison, M.L.2
Young, E.T.3
-
54
-
-
0028328872
-
Zinc finger phage: Affinity selection of fingers with new DNA-binding specificities
-
Rebar E.J., Pabo C.O. Zinc finger phage: affinity selection of fingers with new DNA-binding specificities. Science. 263(5147):1994;671-673.
-
(1994)
Science
, vol.263
, Issue.5147
, pp. 671-673
-
-
Rebar, E.J.1
Pabo, C.O.2
-
55
-
-
0029942895
-
Phage display methods for selecting zinc finger proteins with novel DNA-binding specificities
-
Rebar E.J., Greisman H.A., Pabo C.O. Phage display methods for selecting zinc finger proteins with novel DNA-binding specificities. Methods Enzymol. 267:1996;129-149.
-
(1996)
Methods Enzymol.
, vol.267
, pp. 129-149
-
-
Rebar, E.J.1
Greisman, H.A.2
Pabo, C.O.3
-
56
-
-
0028227930
-
In vitro selection of zinc fingers with altered DNA-binding specificity
-
Jamieson A.C., Kim S.H., Wells J.A. In vitro selection of zinc fingers with altered DNA-binding specificity. Biochemistry. 33(19):1994;5689-5695.
-
(1994)
Biochemistry
, vol.33
, Issue.19
, pp. 5689-5695
-
-
Jamieson, A.C.1
Kim, S.H.2
Wells, J.A.3
-
57
-
-
0029822407
-
A zinc finger directory for high-affinity DNA recognition
-
Jamieson A.C., Wang H., Kim S.H. A zinc finger directory for high-affinity DNA recognition. Proc. Natl. Acad. Sci. U.S.A. 93(23):1996;12834-12839.
-
(1996)
Proc. Natl. Acad. Sci. U.S.A.
, vol.93
, Issue.23
, pp. 12834-12839
-
-
Jamieson, A.C.1
Wang, H.2
Kim, S.H.3
-
58
-
-
0032981699
-
Toward controlling gene expression at will: Selection and design of zinc finger domains recognizing each of the 5′-GNN-3′ DNA target sequences
-
Segal D.J., Dreier B., Beerli R.R., Barbas C.F. III Toward controlling gene expression at will: selection and design of zinc finger domains recognizing each of the 5′-GNN-3′ DNA target sequences. Proc. Natl. Acad. Sci. U.S.A. 96(6):1999;2758-2763.
-
(1999)
Proc. Natl. Acad. Sci. U.S.A.
, vol.96
, Issue.6
, pp. 2758-2763
-
-
Segal, D.J.1
Dreier, B.2
Beerli, R.R.3
Barbas C.F. III4
-
59
-
-
0035800769
-
Development of zinc finger domains for recognition of the 5′-ANN-3′ family of DNA sequences and their use in the construction of artificial transcription factors
-
Dreier B., Beerli R.R., Segal D.J., Flippin J.D., Barbas C.F. III Development of zinc finger domains for recognition of the 5′-ANN-3′ family of DNA sequences and their use in the construction of artificial transcription factors. J. Biol. Chem. 276(31):2001;29466-29478.
-
(2001)
J. Biol. Chem.
, vol.276
, Issue.31
, pp. 29466-29478
-
-
Dreier, B.1
Beerli, R.R.2
Segal, D.J.3
Flippin, J.D.4
Barbas C.F. III5
-
60
-
-
0034691202
-
A bacterial two-hybrid selection system for studying protein-DNA and protein-protein interactions
-
Joung J.K., Ramm E.I., Pabo C.O. A bacterial two-hybrid selection system for studying protein-DNA and protein-protein interactions. Proc. Natl. Acad. Sci. U.S.A. 97(13):2000;7382-7387.
-
(2000)
Proc. Natl. Acad. Sci. U.S.A.
, vol.97
, Issue.13
, pp. 7382-7387
-
-
Joung, J.K.1
Ramm, E.I.2
Pabo, C.O.3
-
61
-
-
0030903688
-
Design of polydactyl zinc finger proteins for unique addressing within complex genomes
-
Liu Q., Segal D.J., Ghiara J.B., Barbas C.F. III Design of polydactyl zinc finger proteins for unique addressing within complex genomes. Proc. Natl. Acad. Sci. U.S.A. 94(11):1997;5525-5530.
-
(1997)
Proc. Natl. Acad. Sci. U.S.A.
, vol.94
, Issue.11
, pp. 5525-5530
-
-
Liu, Q.1
Segal, D.J.2
Ghiara, J.B.3
Barbas C.F. III4
-
62
-
-
0032539902
-
Getting a handhold on DNA: Design of poly-zinc finger proteins with femtomolar dissociation constants
-
Kim J.S., Pabo C.O. Getting a handhold on DNA: design of poly-zinc finger proteins with femtomolar dissociation constants. Proc. Natl. Acad. Sci. U.S.A. 95(6):1998;2812-2817.
-
(1998)
Proc. Natl. Acad. Sci. U.S.A.
, vol.95
, Issue.6
, pp. 2812-2817
-
-
Kim, J.S.1
Pabo, C.O.2
-
63
-
-
0001679585
-
Zinc finger proteins as designer transcription factors
-
Kang J.S., Kim J.S. Zinc finger proteins as designer transcription factors. J. Biol. Chem. 275(12):2000;8742-8748.
-
(2000)
J. Biol. Chem.
, vol.275
, Issue.12
, pp. 8742-8748
-
-
Kang, J.S.1
Kim, J.S.2
-
64
-
-
0035852693
-
Design of polyzinc finger peptides with structured linkers
-
Moore M., Choo Y., Klug A. Design of polyzinc finger peptides with structured linkers. Proc. Natl. Acad. Sci. U.S.A. 98(4):2001;1432-1436.
-
(2001)
Proc. Natl. Acad. Sci. U.S.A.
, vol.98
, Issue.4
, pp. 1432-1436
-
-
Moore, M.1
Choo, Y.2
Klug, A.3
-
65
-
-
0032570259
-
Structure-based design of a dimeric zinc finger protein
-
Pomerantz J.L., Wolfe S.A., Pabo C.O. Structure-based design of a dimeric zinc finger protein. Biochemistry. 37(4):1998;965-970.
-
(1998)
Biochemistry
, vol.37
, Issue.4
, pp. 965-970
-
-
Pomerantz, J.L.1
Wolfe, S.A.2
Pabo, C.O.3
-
66
-
-
0033578395
-
Dimerization of zinc fingers mediated by peptides evolved in vitro from random sequences
-
Wang B.S., Pabo C.O. Dimerization of zinc fingers mediated by peptides evolved in vitro from random sequences. Proc. Natl. Acad. Sci. U.S.A. 96(17):1999;9568-9573.
-
(1999)
Proc. Natl. Acad. Sci. U.S.A.
, vol.96
, Issue.17
, pp. 9568-9573
-
-
Wang, B.S.1
Pabo, C.O.2
-
68
-
-
0026506720
-
Transcription factor loading on the MMTV promoter: A bimodal mechanism for promoter activation
-
Archer T.K., Lefebvre P., Wolford R.G., Hager G.L. Transcription factor loading on the MMTV promoter: a bimodal mechanism for promoter activation. Science. 255(5051):1992;1573-1576.
-
(1992)
Science
, vol.255
, Issue.5051
, pp. 1573-1576
-
-
Archer, T.K.1
Lefebvre, P.2
Wolford, R.G.3
Hager, G.L.4
-
69
-
-
0030836229
-
Transcriptional regulation of mammalian genes in vivo. A tale of two templates
-
Smith C.L., Hager G.L. Transcriptional regulation of mammalian genes in vivo. A tale of two templates. J. Biol. Chem. 272(44):1997;27493-27496.
-
(1997)
J. Biol. Chem.
, vol.272
, Issue.44
, pp. 27493-27496
-
-
Smith, C.L.1
Hager, G.L.2
-
70
-
-
0034704248
-
Genome-wide location and function of DNA binding proteins
-
Ren B., Robert F., Wyrick J.J., Aparicio O., Jennings E.G., Simon I., Zeitlinger J., Schreiber J., Hannett N., Kanin E., Volkert T.L., Wilson C.J., Bell S.P., Young R.A. Genome-wide location and function of DNA binding proteins. Science. 290(5500):2000;2306-2309.
-
(2000)
Science
, vol.290
, Issue.5500
, pp. 2306-2309
-
-
Ren, B.1
Robert, F.2
Wyrick, J.J.3
Aparicio, O.4
Jennings, E.G.5
Simon, I.6
Zeitlinger, J.7
Schreiber, J.8
Hannett, N.9
Kanin, E.10
Volkert, T.L.11
Wilson, C.J.12
Bell, S.P.13
Young, R.A.14
-
71
-
-
0035986070
-
A feel for the template: Zink finger protein transcription factors and chromatin
-
Urnov F.D. A feel for the template: zink finger protein transcription factors and chromatin. Biochem. Cell Biol. 80(3):2002;321-333.
-
(2002)
Biochem. Cell Biol.
, vol.80
, Issue.3
, pp. 321-333
-
-
Urnov, F.D.1
-
72
-
-
0032925156
-
Impaired myocardial angiogenesis and ischemic cardiomyopathy in mice lacking the vascular endothelial growth factor isoforms VEGF164 and VEGF188 [see comments]
-
Carmeliet P., Ng Y.S., Nuyens D., Theilmeier G., Brusselmans K., Cornelissen I., Ehler E., Kakkar V.V., Stalmans I., Mattot V., Perriard J.C., Dewerchin M., Flameng W., Nagy A., Lupu F., Moons L., Collen D., D'Amore P.A., Shima D.T. Impaired myocardial angiogenesis and ischemic cardiomyopathy in mice lacking the vascular endothelial growth factor isoforms VEGF164 and VEGF188 [see comments]. Nat. Med. 5(5):1999;495-502.
-
(1999)
Nat. Med.
, vol.5
, Issue.5
, pp. 495-502
-
-
Carmeliet, P.1
Ng, Y.S.2
Nuyens, D.3
Theilmeier, G.4
Brusselmans, K.5
Cornelissen, I.6
Ehler, E.7
Kakkar, V.V.8
Stalmans, I.9
Mattot, V.10
Perriard, J.C.11
Dewerchin, M.12
Flameng, W.13
Nagy, A.14
Lupu, F.15
Moons, L.16
Collen, D.17
D'Amore, P.A.18
Shima, D.T.19
-
73
-
-
0033830523
-
Isoforms of vascular endothelial growth factor act in a coordinate fashion to recruit and expand tumor vasculature
-
Grunstein J., Masbad J.J., Hickey R., Giordano F., Johnson R.S. Isoforms of vascular endothelial growth factor act in a coordinate fashion to recruit and expand tumor vasculature. Mol. Cell Biol. 20(19):2000;7282-7291.
-
(2000)
Mol. Cell Biol.
, vol.20
, Issue.19
, pp. 7282-7291
-
-
Grunstein, J.1
Masbad, J.J.2
Hickey, R.3
Giordano, F.4
Johnson, R.S.5
-
74
-
-
0036007025
-
PPARγ knockdown by engineered transcription factors: Exogenous PPARγ2 but not PPARγ1 reactivates adipogenesis
-
Ren D., Collingwood T.N., Rebar E.J., Wolffe A.P., Camp H.S. PPARγ knockdown by engineered transcription factors: exogenous PPARγ2 but not PPARγ1 reactivates adipogenesis. Genes Dev. 16(1):2002;27-32.
-
(2002)
Genes Dev.
, vol.16
, Issue.1
, pp. 27-32
-
-
Ren, D.1
Collingwood, T.N.2
Rebar, E.J.3
Wolffe, A.P.4
Camp, H.S.5
-
75
-
-
0036143008
-
Becoming fat
-
Lazar M.A. Becoming fat. Genes Dev. 16(1):2002;1-5.
-
(2002)
Genes Dev.
, vol.16
, Issue.1
, pp. 1-5
-
-
Lazar, M.A.1
-
76
-
-
0035313730
-
Transcription and chromatin converge: Lessons from yeast genetics
-
Gregory P.D. Transcription and chromatin converge: lessons from yeast genetics. Curr. Opin. Genet. Dev. 11(2):2001;142-147.
-
(2001)
Curr. Opin. Genet. Dev.
, vol.11
, Issue.2
, pp. 142-147
-
-
Gregory, P.D.1
-
77
-
-
0035458461
-
Http://C. elegans: Mining the functional genomic landscape
-
Kim S.K. Http://C. elegans: mining the functional genomic landscape. Nat. Rev. Genet. 2(9):2001;681-689.
-
(2001)
Nat. Rev. Genet.
, vol.2
, Issue.9
, pp. 681-689
-
-
Kim, S.K.1
-
78
-
-
0036532201
-
Deciphering gene expression regulatory networks
-
Wyrick J.J., Young R.A. Deciphering gene expression regulatory networks. Curr. Opin. Genet. Dev. 12:2002;130-136.
-
(2002)
Curr. Opin. Genet. Dev.
, vol.12
, pp. 130-136
-
-
Wyrick, J.J.1
Young, R.A.2
|