Toward controlling gene expression at will: Selection and design of zinc finger domains recognizing each of the 5′-GNN-3′ DNA target sequences

Proceedings of the National Academy of Sciences of the United States of America

Volumn 96, Issue 6, 1999, Pages 2758-2763

  Segal, David J ^a   Dreier, Birgit ^a   Beerli, Roger R ^a   Barbas III, Carlos F ^a  

^a SCRIPPS RESEARCH INSTITUTE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

DNA; ZINC FINGER PROTEIN;

CONFERENCE PAPER; DNA SEQUENCE; GENE EXPRESSION REGULATION; GENE SWITCHING; GENE TARGETING; PHAGE DISPLAY; PRIORITY JOURNAL; PROTEIN DNA BINDING; PROTEIN DOMAIN; PROTEIN FAMILY;

EID: 0032981699     PISSN: 00278424     EISSN: None     Source Type: Journal    
DOI: 10.1073/pnas.96.6.2758     Document Type: Article

References (36)

1. Ptashne, M. (1967) Nature (London) 214, 232-234.
2. Miller, J., McLachlan, A. D. & Klug, A. (1985) EMBO J. 4, 1609-1614.
3. Lee, M. S., Gippert, G. P., Soman, K. V., Case, D. A. & Wright, P. E. (1989) Science 245, 635-637.
4. Pavletich, N. P. & Pabo, C. O. (1991) Science 252, 809-817.
5. Elrod-Erickson, M., Rould, M. A., Nekludova, L. & Pabo, C. O. (1996) Structure (London) 4, 1171-1180.
6. Elrod-Erickson, M., Benson, T. E. & Pabo, C. O. (1998) Structure (London) 6, 451-464.
7. Kim, C. A. & Berg, J. M. (1996) Nat. Struct. Biol. 3, 940-945.
8. Pavletich, N. P. & Pabo, C. O. (1993) Science 261, 1701-1707.
9. Houbaviy, H. B., Usheva, A., Shenk, T. & Burley, S. K. (1996) Proc. Natl. Acad. Sci. USA 93, 13577-13582.
10. Fairall, L., Schwabe, J. W. R., Chapman, L., Finch, J. T. & Rhodes, D. (1993) Nature (London) 366, 483-487.
11. Wuttke, D. S., Foster, M. P., Case, D. A., Gottesfeld, J. M. & Wright, P. E. (1997) J. Mol. Biol. 273, 183-206.
12. Liu, Q., Segal, D. J., Ghiara, J. B. & Barbas III, C. F. (1997) Proc. Natl. Acad. Sci. USA 94, 5525-5530.
13. Nolte, R. T., Conlin, R. M., Harrison, S. C. & Brown, R. S. (1998) Proc. Natl. Acad. Sci. USA 95, 2938-2943.
14. Narayan, V. A., Kriwacki, R. W. & Caradonna, J. P. (1997) J. Biol. Chem. 272, 7801-7809.
15. Isalan, M., Choo, Y. & Klug, A. (1997) Proc. Natl. Acad. Sci. USA 94, 5617-5621.
16. Nardelli, J., Gibson, T. J., Vesque, C. & Charnay, P. (1991) Nature (London) 349, 175-178.
17. Nardelli, J., Gibson, T. & Charnay, P. (1992) Nucleic Acids Res. 20, 4137-4144.
18. Taylor, W. E., Suruki, H. K., Lin, A. H. T., Naraghi-Arani, P., Igarashi, R. Y., Younessian, M., Katkus, P. & Vo, N. V. (1995) Biochemistry 34, 3222-3230.
19. Desjarlais, J. R. & Berg, J. M. (1992) Proteins Struct. Funct. Genet. 12, 101-104.
20. Desjarlais, J. R. & Berg, J. M. (1992) Proc. Natl. Acad. Sci. USA 89, 7345-7349.
21. Choo, Y. & Klug, A. (1994) Proc. Natl. Acad. Sci. USA 91, 11163-11167.
22. Greisman, H. A. & Pabo, C. O. (1997) Science 275, 657-661.
23. Rebar, E. J. & Pabo, C. O. (1994) Science 263, 671-673.
24. Jamieson, A. C., Kim, S.-H. & Wells, J. A. (1994) Biochemistry 33, 5689-5695.
25. Jamieson, A. C., Wang, H. & Kim, S.-H. (1996) Proc. Natl. Acad. Sci. USA 93, 12834-12839.
26. Isalan, M., Klug, A. & Choo, Y. (1998) Biochemistry 37, 12026-12033.
27. Wu, H., Yang, W.-P. & Barbas III, C. F. (1995) Proc. Natl. Acad. Sci. USA 92, 344-348.
28. Barbas III, C. F., Kang, A. S., Lerner, R. A. & Benkovic, S. J. (1991) Proc. Natl. Acad. Sci. USA 88, 7978-7982.
29. Barbas III, C. F. & Lerner, R. A. (1991) Methods Companion Methods Enzymol. 2, 119-124.
30. Rader, C. & Barbas III, C. F. (1997) Curr. Opin. Biotechnol. 8, 503-508.
31. Swirnoff, A. H. & Milbrandt, J. (1995) Mol. Cell. Biol. 15, 2275-2287.
32. Crameri, A., Cwirla, S. & Stemmer, W. P. (1996) Nat. Med. 2, 100-102.
33. Suzuki, M., Gerstein, M. & Yagi, N. (1994) Nucleic Acids Res. 22, 3397-3405.
34. Choo, Y. & Klug, A. (1994) Proc. Natl. Acad. Sci. USA 91, 11168-11172.
35. Choo, Y. & Klug, A. (1997) Curr. Opin. Struct. Biol. 7, 117-125.
36. Beerli, R. R., Segal, D. J., Dreier, B. & Barbas, C. F. III (1998) Proc. Natl. Acad. Sci. USA 95, 14628-14633.